rna6905, rna6905 (mRNA) Nannochloropsis gaditana

Overview
Namerna6905
Unique Namerna6905
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length441
Alignment locationCM002469.1:763246..763908 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100475g2.2341.mrna
Orig protein idgnl|cribi|Naga_100475g2.2341
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:763246..763908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100475g2gene6675Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6905rna6905-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23785.1cds6889Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6905 ID=rna6905|Name=rna6905|organism=Nannochloropsis gaditana|type=mRNA|length=441bp
ATGGACAGTGGGAAGACGCAGGATGACTTCGTTCGCGCCATTTCTAGCCC
CAACGAATCGGACCCGGTGGAGAAGGAGATCGCGGCCATCGCCAAGGCCA
GCTCCTTCCTCCCTGAGCGTTACTTCTCCTTCGGGCTCTGCAAGACGATG
GAGGCGCTGGGTGTCGAGGTTAACTGGGATTCGATCAAGACGTGGTGCGA
GAAGTTGAATATGGACGAGTCGCGAACACAGCTGGACTGGGACCTGCTGG
AGCGATCGATGAAGAAGCTGGGTGACCTGGAACTGCTGATGAAGCAGGTG
GAGATTCGCGAGAAGAAGCGCCTGGCCGAGCGATTGGAGGAGAAGGCGAA
GAAGACGGCTGAGATGGCCGCAGTCTCACTGGCGGCGACCTCCTCGACGT
CAACACCCGTGGAGGGGAAGGAACCTGCCATGGCCAATTAA
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protein sequence of rna6905

>rna6905-protein ID=rna6905-protein|Name=rna6905|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MVTLGKERITEGWDGKASEGGAPELEMEEAKKARERRQDLAIGVGMEEKG
TFNCFCHACGAREGGGGLQWWESARLGEDRSDLRSDSRARGRDSVSPSLN
TQGRPFYTQRKESLTRRETASSCVNGGRGWRVWWGGGERERKFKDDGSCG
RGRKPQQHGF
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mRNA from alignment at CM002469.1:763246..763908+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6905 ID=rna6905|Name=rna6905|organism=Nannochloropsis gaditana|type=mRNA|length=663bp|location=Sequence derived from alignment at CM002469.1:763246..763908+ (Nannochloropsis gaditana)
ATGGTGAcgctggggaaggagaggattacagaggggtgggacggaaaagc
gagtgagggaggtgggggtggaggccatACAGTACCCTGATGCCGTGGGA
GGGGTAGGGGCTCCTGAACttgaaatggaggaggcgaaaaagGCTCGGGA
GAGGAGACAGGATTTGGCGATAGGAGTGggaatggaagagaagggaacGT
TTAATTGTTTTTGTCATGCCTGTGTGCGcagggaaacggagggaggaggg
ggaaagaggcgagcgGAGGAAAAGCTATCCGCCCTTTAAAGTGCTCATGC
TAGGTGCACAAAGTTGACGGCAAGTAAAAAACTCAAAAAAGGACTGGtgg
ggaaaagggcgcgcgtgaaggcgggggaggcctACAGTGGTGGGAAAGTG
CGAGGCTGGGGGAAGATAGGAGCGACCTGAGGAGCGACAGTAGGGCCCGA
GGCAGAGATTCggtgtctccctccttaaaCACACAAGGACGCCCGTTCTA
CACACAGAGGAAAGAGTCTTTAACCCGCAGAGAGACTGCCAGCAGCTGTG
TGAAtggtggaagggggtggcgtgtatggtggggagggggggagagagag
aggaagttCAAGGACGACGGGTcgtgtgggagaggaaggaagccgcAACA
GCACGGGTTTTAA
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Coding sequence (CDS) from alignment at CM002469.1:763246..763908+

>rna6905 ID=rna6905|Name=rna6905|organism=Nannochloropsis gaditana|type=CDS|length=1449bp|location=Sequence derived from alignment at CM002469.1:763246..763908+ (Nannochloropsis gaditana)
ATGGTGAcgctggggaaggagaggattacagaggggtgggacggaaaagc
gagtgagggagGGGCTCCTGAACttgaaatggaggaggcgaaaaagGCTC
GGGAGAGGAGACAGGATTTGGCGATAGGAGTGggaatggaagagaaggga
acGTTTAATTGTTTTTGTCATGCCTGTggcgcgcgtgaaggcgggggagg
cctACAGTGGTGGGAAAGTGCGAGGCTGGGGGAAGATAGGAGCGACCTGA
GGAGCGACAGTAGGGCCCGAGGCAGAGATTCggtgtctccctccttaaaC
ACACAAGGACGCCCGTTCTACACACAGAGGAAAGAGTCTTTAACCCGCAG
AGAGACTGCCAGCAGCTGTGTGAAtggtggaagggggtggcgtgtatggt
ggggagggggggagagagagaggaagttCAAGGACGACGGGTcgtgtggg
agaggaaggaagccgcAACAGCACGGGTTTTAAATGGTGAcgctggggaa
ggagaggattacagaggggtgggacggaaaagcgagtgagggagGGGCTC
CTGAACttgaaatggaggaggcgaaaaagGCTCGGGAGAGGAGACAGGAT
TTGGCGATAGGAGTGggaatggaagagaagggaacGTTTAATTGTTTTTG
TCATGCCTGTggcgcgcgtgaaggcgggggaggcctACAGTGGTGGGAAA
GTGCGAGGCTGGGGGAAGATAGGAGCGACCTGAGGAGCGACAGTAGGGCC
CGAGGCAGAGATTCggtgtctccctccttaaaCACACAAGGACGCCCGTT
CTACACACAGAGGAAAGAGTCTTTAACCCGCAGAGAGACTGCCAGCAGCT
GTGTGAAtggtggaagggggtggcgtgtatggtggggagggggggagaga
gagaggaagttCAAGGACGACGGGTcgtgtgggagaggaaggaagccgcA
ACAGCACGGGTTTTAAATGGTGAcgctggggaaggagaggattacagagg
ggtgggacggaaaagcgagtgagggagGGGCTCCTGAACttgaaatggag
gaggcgaaaaagGCTCGGGAGAGGAGACAGGATTTGGCGATAGGAGTGgg
aatggaagagaagggaacGTTTAATTGTTTTTGTCATGCCTGTggcgcgc
gtgaaggcgggggaggcctACAGTGGTGGGAAAGTGCGAGGCTGGGGGAA
GATAGGAGCGACCTGAGGAGCGACAGTAGGGCCCGAGGCAGAGATTCggt
gtctccctccttaaaCACACAAGGACGCCCGTTCTACACACAGAGGAAAG
AGTCTTTAACCCGCAGAGAGACTGCCAGCAGCTGTGTGAAtggtggaagg
gggtggcgtgtatggtggggagggggggagagagagaggaagttCAAGGA
CGACGGGTcgtgtgggagaggaaggaagccgcAACAGCACGGGTTTTAA
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Synonyms
Publications