rna69, rna69 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna69
Unique Name	rna69
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	984
Alignment location	CM002455.1:192424..194246 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100129g14.1880.mrna
Orig protein id	gnl\|cribi\|Naga_100129g14.1880
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:192424..194246 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100129g14	gene68	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna69	rna69-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30602.1	cds69	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:192424..194246-
coding sequence from alignment at CM002455.1:192424..194246-

mRNA sequence

>rna69 ID=rna69|Name=rna69|organism=Nannochloropsis gaditana|type=mRNA|length=984bp
GCCGTAGTGAAATACTATCTTAGTAAGGGTGGGGAGGTTGACATCCAGTG
GCGTACTGTAACCGACAATTTTCAACTCCACCATGAATTTACGTGTCGCA
TATAATGGTACAGGTATGCAAATTATGTCATCAGACTCCGGTTGATCAAT
AAACACGCTAGAAAAATGGAAGGTGCGGTCAATGACGACAGTCTATCGAC
AAAAGGAGGTCACCTCCTCACGAAGCCCTCTTCAATCCTGTCGATAAAGT
GTATGGCGCAAAAACCGCGTCTTCTCCTCCTTTTACACCATATATCAAAA
CGACAAAATGTTCGTACTCTGCTCACTTCGGCTGCAGCCTTTGGTGCGGA
AGTACTGGTGGTTGGTCAGCCCAGCTTTAATGAAACCTCGCACGTACCTC
GACGACTCGCGGAAGCTTTGACACAAGGGGAAAACGCGTCAATTTGCCAG
CCTCAACCACTATATCGGCGCTTCCATGGTACACTAGAAGAATGCCGTGA
TCAACTACGTGAGCAGAATGTGCAAATTTGGGGAGTAGAGATCGGTGAGG
CGGCGGTGAATGTTGAGGAGATACCATGGGCAACGTCGGCATCCAAGTGG
GAGAAGGAGGGTCGAGGAGGCATTGCCCTCTTGTTGGGAAACGAAGGTAC
AGGGATGTCTGCACGGCAAGCTCGGGTGTGTGATGGCTTTGTTTACATCA
GCCAGTACGGGCAGGGGACCGCGTCACTGAACGTGGCTGTTGCAGGAAGC
ATCGTCATGCACCGGTTCAGCGAGTGGGCGGCCGACTCCTGCCAAGGCGG
TGCCGAAGAGGAAAGACATGTGAATGACGAATTTTCAGCGAGCTCCGTAT
CGAGTCGAGGCATGTGACTGGCTACATAAAACGAACGCATTTCGGACAAA
CGCCCACGCATAAATGGCCATTTGTTTGTACATTTTGGACTTTCTCCCAC
CAAGTCTCCGCCCCATCCCCCATGCAATTGCCAT

protein sequence of rna69

>rna69-protein ID=rna69-protein|Name=rna69|organism=Nannochloropsis gaditana|type=polypeptide|length=338bp
MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFA
LAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHR
SVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPD
ASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHST
LLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTH
RLVLLDMGEAAKITEFLRRQKAVQQRLAVGGGREGGREGGREGVHDVALG
LTVGEDMEVIEARVIMDGEVLDVRIPEKEVVQGGECLN

mRNA from alignment at CM002455.1:192424..194246-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna69 ID=rna69|Name=rna69|organism=Nannochloropsis gaditana|type=mRNA|length=1823bp|location=Sequence derived from alignment at CM002455.1:192424..194246- (Nannochloropsis gaditana)
ATGGACTTTTGCTACCCCCTATCCACCTGGTCCTTCGCAGTGCACACAGC
CTGTGCCAGCGTTGCCTTCGTCTGCCTCTTTCCCGCCGTGTACTTTGGTT
ACCAGATCCAGCACCGGCTTATCTTCATGACGCCCACGCTTTGCTTCGCC
CTGGCCTACGAAAACCTGCTCCTGGTGGTACCCAACACCCCTTTCTGCAC
CCTAAGCGCCCAGCGCTTTGGCTGGATCATGAACGGTACGTCGGCGACTG
GACAACTGCCCTCGGGTCCCCCCCCTTCCCCTTCATGCCCCGGCCTCATT
GGGATACTTACCCTTCCTCCCTCCTTCCCTCCCTGCCTCCCTCCCTCCCT
CCCAGCCGTGATCCCTCCCCTCTTCTTGGTCGCCTCCTTCGAGACGGGCT
ACGCGGTCCACAAGCACCGGTCCGTCAAGTACCTGGGCATCAATTTCGAC
GAAGGGAAACGCGTGGATACGGCCCCCTGCTCCTGGTTCCTCCGCAACTT
GGTCCGGCTCATCGCCCTCGCGCTTTTCTTCATGGGCCTCATTGTGAATT
TCTCGGTGTTTTTCCCCGACGCCTCGGATAATGCCGGTATGTCCGGGTAC
CTTGGCCTGGGCCGGGGCGACGTGGCGCATTACTACGTCTCCATCGTCCC
CTCCCTGGTTTTCTCCTTGGTCACGCTCGTCATTGCCGCCACCATTAAAC
GGTACGGACGACACTCCACCCTCCTCATCCCCCGGTCCTGCGGGTGGAAC
TGGCTCTTGCTGGGGAGCCTTTTGCAGACGGCTGGGCAGTTCCCCGCCTC
CACCGCCCTGTACCCCTCCACCTCCATGGCGGGGCAAGTCGTGTTGTTGA
TCTCGCTCTTGCTGACGCATCGGCTGGTGTTGCTGGACATGGGGGAGGCG
GCGAAAATCACCGAATTCCTCCGGCGGCAAAAGGCAGTGCAGCAACGCTT
GGCGGTGGGCGGGTGGGTGGAGGCTCGGAGGGGGAGGAAGGATGGGGGGG
GAAGCAGGCGCCGAGGGAGGGCGGGAGGGAGGGCAGTGGCAGACGAACGG
CCACCACCACCACGGAAAACACGGACGGAGACGGTCGCTTTCTCATCACC
AGGGAGGGAAAGGAGGGTTGGAATTGGGACGAGGGAGGGGATGGGAGGGT
CAAGGGACGTTGCCGGGGAGCGTGCGTGCGGATTCGGAGACGGAGGGAGG
GAAGGAAGTACCGGGCGTAGAAGGAGCCGATGAGGAAGACATGGAGGGGG
CAATGGGTAACGTGTCCTCCATGGAAGAAGGGAGGGGGTTTCCGCCCTCC
GAGGGGGCTGGTGTGGTGCAATTGAGCGGAGGGGAGGAGGGAGGGAGGGA
AGGAGGGAGGGAGGGAGGGAGGGCAAGGGGTGGGGGTGGATTGTTGCGGC
GCGTGAGCGGCTTGTTCGAGCGGCGGACAGCGTCCAGGCCCGAGGCGGCC
GGTGCATGCCCGGACAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGTGCATGACGTTGCCTTGGGGTTGACGGTGGGAGAGGACATGGAGG
TGATAGAGGCAAGGGTGATCATGGATGGGGAAGTCTTGGACGTGAGAATA
CCAGAAAAGGAGGTTGTTCAAGGTGGAGAATGCTTGAACTAGGCGGACAA
AGGACAGGCGCGAAGGAAAGCGTGCCGGGGTGAGGATAGAGGATACCTTT
GCGGTTGAGAGTCTGGCGAGGCTTGTGGTGGGATGGAAAGGAGGGAAGGG
AGAGATGGCAATTGCATGGGGGATGGGGCGGAGACTTGGTGGGAGAAAGT
CCAAAATGTACAAACAAATGGCC

Coding sequence (CDS) from alignment at CM002455.1:192424..194246-

>rna69 ID=rna69|Name=rna69|organism=Nannochloropsis gaditana|type=CDS|length=3051bp|location=Sequence derived from alignment at CM002455.1:192424..194246- (Nannochloropsis gaditana)
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGCATGACGTTG
CCTTGGGGTTGACGGTGGGAGAGGACATGGAGGTGATAGAGGCAAGGGTG
ATCATGGATGGGGAAGTCTTGGACGTGAGAATACCAGAAAAGGAGGTTGT
TCAAGGTGGAGAATGCTTGAACTAGCCGTGATCCCTCCCCTCTTCTTGGT
CGCCTCCTTCGAGACGGGCTACGCGGTCCACAAGCACCGGTCCGTCAAGT
ACCTGGGCATCAATTTCGACGAAGGGAAACGCGTGGATACGGCCCCCTGC
TCCTGGTTCCTCCGCAACTTGGTCCGGCTCATCGCCCTCGCGCTTTTCTT
CATGGGCCTCATTGTGAATTTCTCGGTGTTTTTCCCCGACGCCTCGGATA
ATGCCGGTATGTCCGGGTACCTTGGCCTGGGCCGGGGCGACGTGGCGCAT
TACTACGTCTCCATCGTCCCCTCCCTGGTTTTCTCCTTGGTCACGCTCGT
CATTGCCGCCACCATTAAACGGTACGGACGACACTCCACCCTCCTCATCC
CCCGGTCCTGCGGGTGGAACTGGCTCTTGCTGGGGAGCCTTTTGCAGACG
GCTGGGCAGTTCCCCGCCTCCACCGCCCTGTACCCCTCCACCTCCATGGC
GGGGCAAGTCGTGTTGTTGATCTCGCTCTTGCTGACGCATCGGCTGGTGT
TGCTGGACATGGGGGAGGCGGCGAAAATCACCGAATTCCTCCGGCGGCAA
AAGGCAGTGCAGCAACGCTTGGCGGTGGGCGGATGGACTTTTGCTACCCC
CTATCCACCTGGTCCTTCGCAGTGCACACAGCCTGTGCCAGCGTTGCCTT
CGTCTGCCTCTTTCCCGCCGTGTACTTTGGTTACCAGATCCAGCACCGGC
TTATCTTCATGACGCCCACGCTTTGCTTCGCCCTGGCCTACGAAAACCTG
CTCCTGGTGGTACCCAACACCCCTTTCTGCACCCTAAGCGCCCAGCGCTT
TGGCTGGATCATGAACGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGTGCATGACGTTGCCTTGGGGTTGACGGTGGGAGAGGACATGGAGG
TGATAGAGGCAAGGGTGATCATGGATGGGGAAGTCTTGGACGTGAGAATA
CCAGAAAAGGAGGTTGTTCAAGGTGGAGAATGCTTGAACTAGCCGTGATC
CCTCCCCTCTTCTTGGTCGCCTCCTTCGAGACGGGCTACGCGGTCCACAA
GCACCGGTCCGTCAAGTACCTGGGCATCAATTTCGACGAAGGGAAACGCG
TGGATACGGCCCCCTGCTCCTGGTTCCTCCGCAACTTGGTCCGGCTCATC
GCCCTCGCGCTTTTCTTCATGGGCCTCATTGTGAATTTCTCGGTGTTTTT
CCCCGACGCCTCGGATAATGCCGGTATGTCCGGGTACCTTGGCCTGGGCC
GGGGCGACGTGGCGCATTACTACGTCTCCATCGTCCCCTCCCTGGTTTTC
TCCTTGGTCACGCTCGTCATTGCCGCCACCATTAAACGGTACGGACGACA
CTCCACCCTCCTCATCCCCCGGTCCTGCGGGTGGAACTGGCTCTTGCTGG
GGAGCCTTTTGCAGACGGCTGGGCAGTTCCCCGCCTCCACCGCCCTGTAC
CCCTCCACCTCCATGGCGGGGCAAGTCGTGTTGTTGATCTCGCTCTTGCT
GACGCATCGGCTGGTGTTGCTGGACATGGGGGAGGCGGCGAAAATCACCG
AATTCCTCCGGCGGCAAAAGGCAGTGCAGCAACGCTTGGCGGTGGGCGGA
TGGACTTTTGCTACCCCCTATCCACCTGGTCCTTCGCAGTGCACACAGCC
TGTGCCAGCGTTGCCTTCGTCTGCCTCTTTCCCGCCGTGTACTTTGGTTA
CCAGATCCAGCACCGGCTTATCTTCATGACGCCCACGCTTTGCTTCGCCC
TGGCCTACGAAAACCTGCTCCTGGTGGTACCCAACACCCCTTTCTGCACC
CTAAGCGCCCAGCGCTTTGGCTGGATCATGAACGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGTGCATGACGTTGCCTTGGGGTTGACGGT
GGGAGAGGACATGGAGGTGATAGAGGCAAGGGTGATCATGGATGGGGAAG
TCTTGGACGTGAGAATACCAGAAAAGGAGGTTGTTCAAGGTGGAGAATGC
TTGAACTAGCCGTGATCCCTCCCCTCTTCTTGGTCGCCTCCTTCGAGACG
GGCTACGCGGTCCACAAGCACCGGTCCGTCAAGTACCTGGGCATCAATTT
CGACGAAGGGAAACGCGTGGATACGGCCCCCTGCTCCTGGTTCCTCCGCA
ACTTGGTCCGGCTCATCGCCCTCGCGCTTTTCTTCATGGGCCTCATTGTG
AATTTCTCGGTGTTTTTCCCCGACGCCTCGGATAATGCCGGTATGTCCGG
GTACCTTGGCCTGGGCCGGGGCGACGTGGCGCATTACTACGTCTCCATCG
TCCCCTCCCTGGTTTTCTCCTTGGTCACGCTCGTCATTGCCGCCACCATT
AAACGGTACGGACGACACTCCACCCTCCTCATCCCCCGGTCCTGCGGGTG
GAACTGGCTCTTGCTGGGGAGCCTTTTGCAGACGGCTGGGCAGTTCCCCG
CCTCCACCGCCCTGTACCCCTCCACCTCCATGGCGGGGCAAGTCGTGTTG
TTGATCTCGCTCTTGCTGACGCATCGGCTGGTGTTGCTGGACATGGGGGA
GGCGGCGAAAATCACCGAATTCCTCCGGCGGCAAAAGGCAGTGCAGCAAC
GCTTGGCGGTGGGCGGATGGACTTTTGCTACCCCCTATCCACCTGGTCCT
TCGCAGTGCACACAGCCTGTGCCAGCGTTGCCTTCGTCTGCCTCTTTCCC
GCCGTGTACTTTGGTTACCAGATCCAGCACCGGCTTATCTTCATGACGCC
CACGCTTTGCTTCGCCCTGGCCTACGAAAACCTGCTCCTGGTGGTACCCA
ACACCCCTTTCTGCACCCTAAGCGCCCAGCGCTTTGGCTGGATCATGAAC
G

Synonyms

Publications