rna6899, rna6899 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6899
Unique Name	rna6899
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2295
Alignment location	CM002469.1:753143..754520 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100812g2.2367.mrna
Orig protein id	gnl\|cribi\|Naga_100812g2.2367
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:753143..754520 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100812g2	gene6669	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6899	rna6899-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23791.1	cds6883	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:753143..754520-
coding sequence from alignment at CM002469.1:753143..754520-

mRNA sequence

>rna6899 ID=rna6899|Name=rna6899|organism=Nannochloropsis gaditana|type=mRNA|length=2295bp
AGGACGAGGAAGGCGAGAAGGAGGATGGGGAAGGCTGGGGTTGGGAAGAC
CCTTGCCCCGCTCCACGCCCTCCCTCCGCCCTGCCTCCCTCCGTCCCTCC
CTCGGTCGGTCCCCCGCCGTTGCCACCTCTGTCTCCGAGCAGGCAGGGAG
GGAAGGAAGGAGCTGAACTGACGCCGGAGGAAGTGATGGGGGCTCTGGCG
GAGGTGGTGGAGGCGATGGGAGGTCTGAATGCGGACCAGTACACGGTCCT
CCGCACCATCTGTGAATGGGTTTGTCCCTCCCTCCCTCCCTCCACCGACA
TCGTCTACTCCTCCTCCCCCATCCTGCTCGTCCACGGGGTCTTTGGGAGC
GGGAAGAGTCACATGCTGGTGGCCCTGTGCCTCCTCCTCGATCAACTCTC
CAACCGCCTCCGCCTGGACCGAGGGGGAAAAGAGGAGGAAGAGGAGTTGG
AAGGAGAGAGCCGGGGGGGGCTGATGAAGGGCTGGCGGCGGCGGGAGGAG
GGAGGAAGGGACGGAGGGCGGGATGGAGAGAGGGAGGGAAAGAAGAGTGA
CTTTCGGGTCCTCATTGCGAGCGCCACGAATGTCGCGGTGGACAATATCC
TCGTGCAGCTTCTTGAGAAAGGGTATACGAGCCTCACCCGCATCGGCTCT
TCTCAGCGCTCGAACCCTGCCCTCCTTCCATACCTCTACGCGGCGTCAGA
CTCCACCGCCTCCTCTATCTCCGCTACCGCTTCCTCCTCTGTCCCCTCTT
CCCAACAGTCTCCTTCCCAGCAAAACCAACGCTTCGCCTCCGCAAGGATC
GCCGGTGCCACCATTGCGTCTTGCTTTCCCACCCTCCACCAAGCTGTACT
AGCCACAGGAGCAGGTTTTCCTTTCGTCATCATTGACGAGGCCTCTCAGC
TCATGGAGCCCTTGACCCTCCTCCCTCTTCTGGCGGCTGGCGGTGCCTCG
CGCCTCATCCTGGTCGGAGACCCCCAGCAGCTCCCTCCTCCGGTCAACAT
GCATGCCCGCGACGCCCCGCCTACCTCGAACCCTTCCTCTGCCCCTCCCT
CCCTCGGTGCGCACCTCGTGCGTCCTCTCTTCCAGCGTTTGTCGTCCCCT
TCGATGCCTCCAATAGTGCTACGCACACAATACCGGTGTCACCCCACCCT
GAGCAAACTTGCCTCCGACCTTTTCTACCAGGGGCAGCTTCGCGACGGCA
TCAACCGGGAAGATCGGGGCCCCGTGGTCGGCCGCTTGCCTCCTTTGGTC
TGGATTGACGTGCCCCACGGCTCGGAGCAGCAGGCTGGTGGTGAGAGTTA
CCAAAACATCGCAGAGGCCGCTATCGTTGTGCAGGCACTCCAATGGCTTC
TAGCCGTACAGACACGACAAGGGTGGGAGGAACAGCCGGACGGAGGACGT
ATGGATGGGGAAGGGGTGGGAAATGAAGAAAGGAAGGGCGTGCGGCAGCG
GAAAGTCTTGGAACCAGATGACATTGGCATCATTGTTCCTTACAAAGCTC
AAGCGACTCTGATCATGCGAATGATGAAGGAGAAAAACCTCCTGCCCCCC
TCGAGGCGCGGTGCTCCCCCCAGCCATGTCAAGGTCTCGACCGTCGATGC
TTTCCAAGGCGCCGAACGGGAGGTCATTCTATACTCCTGCGTCCGCACCG
GCGGCCTCGGCTTCCTCGACAGCCCCAATCGACTAAACGTTGCCATTACG
CGTGCTCGACGTCACCTGGTGCTGGTTGGGAACGCGCAGGCCCTTGTCAT
GCTCTCTGTCCTGGGAAGGAAAGGGGGACCGGGAGGAGAGGGTCTTGGCG
GGGGAGGGGGAGGAGGGGAAGGTGGAAGCAAACCTGGCATGTGGTCAGAA
ATTGTACGGCGTGCGGTACCCTGCTCACACGTCCAGGAACTTGGGGACTG
GCTGGTCGAATGAGAAGGGATGGGAGTTTAGAGGGTCGTCAGCGGAGTAG
GAGGAGGGAAGAAAGCATGTACAGCACAAGGAGACAGAGGTCCCTGCCCT
TGTGCTTCAAATTTTGTGGCGTTGCCATAAGCCTCGATGGTTTATTTCTT
TACCCTATCGTTACTGTAGCCATATTAATCCATTCATTCTTCACATTAAT
GTTATCGCGTCTTATTTAGCTATGCCTCAACCACTTGCTACCAACCTACA
AATTCTTCCCTCCCTTTTCCTCCCTGTTCCGGTCTCACGCCCTTCTCTTT
CCAATCGCTTCCTCAGGAGGCCGCCCTCTCCCTTTCCTTCCCTTCCGATT
GATATCGGCTCCCCATTTCACCGCCCGCTCCACTACCTCTTCCTC

protein sequence of rna6899

>rna6899-protein ID=rna6899-protein|Name=rna6899|organism=Nannochloropsis gaditana|type=polypeptide|length=91bp
MYQTLRVLRTKGWKLRGEKGLYQAALTACYCEGDDEMGRGLREEAFRLHG
IEVGAEEEVVERAVKWGADINRKGRKGRGRPPEEAIGKRRA

mRNA from alignment at CM002469.1:753143..754520-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6899 ID=rna6899|Name=rna6899|organism=Nannochloropsis gaditana|type=mRNA|length=1378bp|location=Sequence derived from alignment at CM002469.1:753143..754520- (Nannochloropsis gaditana)
CCAGGCGGAGGCCCTCCTGCACGAGGCGGAGGAGACGGTGGGACTCACCG
TCGACGCGGCTCTGTACGCGTGTCTGATGGCGGCCTACAACAGGTGGGAA
GGAGAGAGGGCTCCAGGGAGATGCCCAAGTCATTTGGACACGTGCGCCCC
GTTTTCATCTGCCATATCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTC
CCTCTCTCTTTCTCTTCTCAGGCGCGGCCATCCCGGGCGGGTCCTCAAAT
TGCATCGGCGGATGCGGCGACGGGGGGTAGAACCTAGTGCTTCCGCGCTG
ACACAGGTAAGGAGGAAAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGAGA
AGAAAGGGCGTGATCAAGCATGACCAGTAGTCATATAAGAAGAGACGCAC
GAGGTGCAAGAAGAAAGAGAGGCGAAGAAAATTTTTGGGTATGAAGAAGG
AGAGGGGTTGACGTGGTGATACCTCTTCGGTCTCCTCCCTCCCATCCTGC
CCTCTTCCAGGTCCTTCTCGCCTGCCGGCGGCGGGGGGACGCTGAGGGAA
TGTATCAGACGCTCAGAGTGCTGCGGACGAAGGGGTGGAAGTTGCGAGGG
GAGAAGGGTCTGTATCAAGCGGCCTTGACCGCATGTTACTGCGAAGGAGA
CGATGAGATGGGGAGAGGGCTCAGGTGAGGTGGCGGATCGAGGAGAGAGG
GAGGGAGAAAGGGAGGGAGAAAGGGAGGGAGAGGGGGAGAAATGCACGGA
AGATGACATTGAGTAATGCTAAGTGGATCGTTGTGCTTTATGAATACTTT
TTTCTCTGGCTGGATTTCCCGCCCCCAGTACGCCCTTTCGTGAGACTTAT
CTCGCCGGACTACGCGCTCTGTCTGTTCCCACGAAACGTCTTGCCGTCCT
TGTTCGCACCCTGTTTTGTTTGTCTTCTTCGTGATACACGACCACGGAGT
CCTTAAGCCCCTTAAAGAGCCCTTTTTTTTCCGTCTCTTTCAGCAAGCAT
GATAAGACTTCCCCCCCCCCACCCTCCCTCCCTCTCTCCCATGTCCTCCC
TCCCCATCAGAGAGGAGGCTTTTCGGCTGCACGGAATCGAGGTTGGGGCG
GAGGAAGAGGTAGTGGAGCGGGCGGTGAAATGGGGAGCCGATATCAATCG
GAAGGGAAGGAAAGGGAGAGGGCGGCCTCCTGAGGAAGCGATTGGAAAGA
GAAGGGCGTGAGACCGGAACAGGGAGGAAAAGGGAGGGAAGAATTTGTAG
GTTGGTAGCAAGTGGTTGAGGCATAGCTAAATAAGACGCGATAACATTAA
TGTGAAGAATGAATGGATTAATATGGCTACAGTAACGATAGGGTAAAGAA
ATAAACCATCGAGGCTTATGGCAACGCC

Coding sequence (CDS) from alignment at CM002469.1:753143..754520-

>rna6899 ID=rna6899|Name=rna6899|organism=Nannochloropsis gaditana|type=CDS|length=552bp|location=Sequence derived from alignment at CM002469.1:753143..754520- (Nannochloropsis gaditana)
AGAGGAGGCTTTTCGGCTGCACGGAATCGAGGTTGGGGCGGAGGAAGAGG
TAGTGGAGCGGGCGGTGAAATGGGGAGCCGATATCAATCGGAAGGGAAGG
AAAGGGAGAGGGCGGCCTCCTGAGGAAGCGATTGGAAAGAGAAGGGCGTG
AATGTATCAGACGCTCAGAGTGCTGCGGACGAAGGGGTGGAAGTTGCGAG
GGGAGAAGGGTCTGTATCAAGCGGCCTTGACCGCATGTTACTGCGAAGGA
GACGATGAGATGGGGAGAGGGCTCAGAGAGGAGGCTTTTCGGCTGCACGG
AATCGAGGTTGGGGCGGAGGAAGAGGTAGTGGAGCGGGCGGTGAAATGGG
GAGCCGATATCAATCGGAAGGGAAGGAAAGGGAGAGGGCGGCCTCCTGAG
GAAGCGATTGGAAAGAGAAGGGCGTGAATGTATCAGACGCTCAGAGTGCT
GCGGACGAAGGGGTGGAAGTTGCGAGGGGAGAAGGGTCTGTATCAAGCGG
CCTTGACCGCATGTTACTGCGAAGGAGACGATGAGATGGGGAGAGGGCTC
AG

Synonyms

Publications