rna6890, rna6890 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6890
Unique Name	rna6890
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1965
Alignment location	CM002469.1:723136..724945 +

Link to JBrowse

Properties


Property Name	Value
Product	kinesin-like protein kif6
Orig transcript id	gnl\|cribi\|Naga_100408g2.6010.mrna
Orig protein id	gnl\|cribi\|Naga_100408g2.6010
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:723136..724945 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100408g2	gene6660	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6890	rna6890-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23801.1	cds6874	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:723136..724945+
coding sequence from alignment at CM002469.1:723136..724945+

mRNA sequence

>rna6890 ID=rna6890|Name=rna6890|organism=Nannochloropsis gaditana|type=mRNA|length=1965bp
CATCGGGGGAAGGGAGTGATACTCGTTCAAAGACGGAAGCCTAGTACTCA
CACAAAAAGCTGTCTCTCTCCTTCATAGGTCCGACGCAGCCGGATGGATC
CCTGATCTATGGGGGAAGAAACTGGCGTAGACAATTGCGACATACTGACT
TGCGGGGATGAGGAGTGGTTTCGGGTCGTCGAATCAATACACAGTATCGT
GGAAGGAGGGCCAAGCGAAGGAGGGGTCGGACAGGCGGAGACCGAGGAAA
TACCGCGTTACGGGCAAGGAAAAGGTTGTTTTTTAATAAAGGGGGGAAGG
CCTGTGTGCGAGCCTTCTGGTTCCTCGTCGGTAAAGCATCCTCTTTCTGC
CTAGTCATCGTCTGTGGGGGCGAGAGTACTTGCAGGTCATGCGCTCTCTG
TGGTGACGATCATCCAGGATATTGCCTGTTTCCCCTTTGTAGAGACCCTG
TGCCCAGTTTGATCCAAGGGAGGAAGGACTCCATCCTCTTCTCACCCCAT
GGCTCCGTTTGCTTCTCCCCTGCACCTCTTCCTCCTCTCCCACAGGGGCG
TTGGCCTCTTTGCGCCAGAAAGCTGACAATGTGCCGGCCCCTACCTTGCA
GTCCACTCTGGAGGACGAGAACGGCTCAGGAAGAACGACGGATGTGGGGC
TCAAAATGTGCGCAGAAAATCATGGTCTGATGATGCAGGGTAACGAGGTG
ACGGAAGTCATGCCCGGCGTTCCTCCCGTCGTGTCCCCCAGCGTCAGTCT
CCCTGACGCTGCCGTGCCCTTGGGCGGGGGAATGCGCGCAGAGGCGAAGG
CGCGGGCGGAGAGAAAAATGTCTCTGGTACAGCTTAGAGACAACCCCCTT
GTGCAGGAGATGGCGGACAGGGCGGCCTTGGAGATGGTCTCTTCCTCCTT
GCTAGATATGCAGAAAGCTGGAAAAATAGATGTGCTTCGAGCCGTGGCTG
TATTGCGCGTGGGCGCCTTGTCCTTCCACCGCACAGCTTCTGCTCAGATC
AGGCAGTACTGCGAGGTGCTAGGCACGCTCATTGGAGTGGACTGGCGGAC
TGTCCTGGAGGAGGAGGAAGCCGCGGCGGCACGACGACAGGATCCGATCT
CTGAGGCCGAGTTCATCTCCGCGCAGGGGGAAGTCAACGCCCTTGTCCAG
CCATGGGAAGCCCGGGGCGTGCCCATCGCCTACACCATCTCTGTGAAGGG
GGAGGTCCGGGTATATTTCAACGAGTGCTTTGTCAATGGTTACCTTCGCG
ACGCGACGCAGGTCAAGGAGTTCTCCTCTCCCAACGTGGTGCCTCTGTTG
CTGTGGCGACGCGTGATCGTCCCTGAAGATCAACTCTTCTTCTTCACTGC
CATGACCAGCTGCATCGTTAGTCAAGAGGGGCCTCCAGGATCACGGGAAG
TTGCCGTCCTTGTCCGGTGTTTTCAATACGACGGTGCCGAAGTCCTCTCT
GAGGTGCGCTACCGTGTCCTGTACTCCACTCATGGCTTTGCACAAGCCTT
CTCCATTCATCCACTGACATTCGACGAGACCCTGGCAGAAGAGGAGAAGC
GGCGTCGAGAAGCGGCAAACCCAACACCCACCTTCCGTGTGTACACACCC
TCTTAGGTAGAGACTCGAAACTCAAAGTAACGCGGCAAATATGAAGAACT
GAGTTCGCGCAGAGACAACATAATGAAGAAATAGAGTAACGCTTGGCAGA
GTGATAGAGAGAGATGAAAGGACTTGATTGCAGTAACTACAGCATGAATT
GAATGTACTACGTTGGCACTAACTTAAAGCAACTGAATCGGTCCCATGTG
AAAGACGACCCGAACAAGACACAATGGAAATAAGAGGGCTGATTCAAAGT
CTTTATCGAGCGTGCATATATACGGCAAGTGAGAGTTGAGCGTGCACATA
TATTGCAAGTGTGATGTTGTCCTACGGAAAAACAAAGCTGGCCGCCAGCA
TGCAGTGTTACCAAT

protein sequence of rna6890

>rna6890-protein ID=rna6890-protein|Name=rna6890|organism=Nannochloropsis gaditana|type=polypeptide|length=434bp
MLGESIQSTDKAGTADISPLSTRLAFNIPQDVAVSGFVNNNKTQHHFTFT
GILGMEVLQDEVFAHLGREVVLNAMDGYNSTIFAYGQTGSGKTFTITGGP
ERYADRGLIPRTLQMLFQEIRRRGFHSAGAGTDEEAAPVMYQVCVSYLEI
YNEMGYDLLGEENRKEEGRQGESGALRLPRVVPLEDEGGHCQLRGLSVHP
VSTEEDALNLLFVGDTNRAIGETATNEASSRSHCLFMLTLEGRRPGKETV
RRSKLNLVDLAGSERVHKTGGNGLGRGGQTLREAKYINQSLFYLENVILA
LYEKRSHVPYRNSLMTSVLRDSLGGNCRTVMVATVATERSHTEESLSTCR
FAMRVGQIRNDAKQNEDLDPFQVIKRLQTQLVAARAEAGWTEKGGKEVPL
SEEEKDAVRAACHDFVSRCEPGYEGIWTRGRGRG

mRNA from alignment at CM002469.1:723136..724945+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6890 ID=rna6890|Name=rna6890|organism=Nannochloropsis gaditana|type=mRNA|length=1810bp|location=Sequence derived from alignment at CM002469.1:723136..724945+ (Nannochloropsis gaditana)
ATGCTTGTACCGGCTTAGATAATGCAAGGACCGGCATTTGTACCGCCGCT
AGCAGCACCATCACCACTACTAATACCAACGGCAAGAACAATAGCAATCA
CATCAAAGTTTTTTTGCGGCTCAAACCCAGCAAACGCCCCTCATCCTACA
TcagccttgctcctcctcaactTGGCAAGGGTGAAAGCATTCAATCAACT
GATAAGGCGGGCACTGCCGacatttcccctctttccacacGCTTGGCCTT
CAATATACCTCAGGATGTGGCGGTATCGGGCTTTGTCAATAACAACAAGA
CCCAGCATCATTTCACTTTTACGGGCATCCTGGGCATGGAAGTATTGCAA
GACGAAGTCTTTGCACACCTGGGCCGGGAGGTGGTTCTCAATGCCATGGA
TGGATATAATTCCACCATCTTCGCCTATGGGCAGACCGGCTCAGGGAAGA
CATTTACCATCACCGGCGGCCCGGAGAGGTATGCCGACCGAGGACTCATC
CCTCGGACATTACAGATGCTCTTCCAAGAAATACGCCGGCGGGGATTCCA
CAGCGCAGGGGCCgggacggacgaggaggcagcacCGGTCATGTATCAGG
TGTGTGTATCCTACCTGGAAATTTACAACGAGATGGGCTACGATTTGCTG
GGGGAAGAGaaccggaaggaggagggacggcagggagaaagcggcgcGCT
GAGGTTGCCTCGCGTGGTGCCATTGGAAGACGAAGGTGGGCACTGCCAAC
TCCGAGGGCTTTCCGTGCACCCCGtgagcacggaggaggacgcgttGAAC
CTGCTTTTTGTCGGCGACACAAACCGGGCCATCGGGGAGACGGCCACGAA
CGAGGCGTCTTCCCGTTCCCATTGCTTGTTCATGCTCACCttggagggac
ggaggccggggaaggagacggtgcGGCGGAGCAAGTTGAACCTGGTGGAT
TTGGCGGGCTCAGAACGGGTCCACAAAACGGGGGGAAACGGactgggaag
ggggggacaGACATTACGGGAGGCCAAATACATCAATCAGTCCCTCTTTT
ATTTGGAGAACGTCATTTTGGCTTTGTACGAGAAGCGTTCGCACGTGCCA
TACCGGAACAGTTTGATGACGTCCGTGTTGCGAGACAGTTTAGGGGGAAA
CTGCCGCACCGTGATGGTGGCGACCGTGGCGACCGAACGGAGCCACACGG
AAGAATCCTTATCCACTTGTCGGTTCGCCATGCGCGTGGGCCAGATTCGA
AACGATGCGAAACAGAACGAGGATCTGGACCCTTTTCAGGTCATCAAACG
CCTTCAGACCCAACTGGTGGCCgcgcgggcggaggcgggatggaccgaga
agggcgggaaggaggttccGCTgagcgaagaggaaaaagatgcGGTGCGA
GCCGCCTGTCACGATTTCGTGAGTAGATGTGAGCCAGGGTATGAGGtagg
acaggaggaaggaggaggaggaggtggtggtggaaggggtggagaaggtg
gaggagaaggaggaggagaaggacaatttcgagagcaaggaggaggagaa
ggacgagggggaaagcaagaaggaggaaaatcaGGGGGTGGACCAGCGAG
CAAAGACatagaaggaggagagggccctGACTTGGGATCTCCATTGACGC
TGGCCAAAGTCTTCTACGCCTTCCGGGTCTTGCGGAGAATGGTGTGGGAG
AAAAGGCCGaccaaagaggagggcgagacgagCGGAAGGTCGGATCCGGC
GCCAGGCGTACTCCCCTTGCCTGATAGGGGATTTGGACGAGGGGCCGGGG
AAGGGGTTGA

Coding sequence (CDS) from alignment at CM002469.1:723136..724945+

>rna6890 ID=rna6890|Name=rna6890|organism=Nannochloropsis gaditana|type=CDS|length=3915bp|location=Sequence derived from alignment at CM002469.1:723136..724945+ (Nannochloropsis gaditana)
ATGCTTGGTGAAAGCATTCAATCAACTGATAAGGCGGGCACTGCCGacat
ttcccctctttccacacGCTTGGCCTTCAATATACCTCAGGATGTGGCGG
TATCGGGCTTTGTCAATAACAACAAGACCCAGCATCATTTCACTTTTACG
GGCATCCTGGGCATGGAAGTATTGCAAGACGAAGTCTTTGCACACCTGGG
CCGGGAGGTGGTTCTCAATGCCATGGATGGATATAATTCCACCATCTTCG
CCTATGGGCAGACCGGCTCAGGGAAGACATTTACCATCACCGGCGGCCCG
GAGAGGTATGCCGACCGAGGACTCATCCCTCGGACATTACAGATGCTCTT
CCAAGAAATACGCCGGCGGGGATTCCACAGCGCAGGGGCCgggacggacg
aggaggcagcacCGGTCATGTATCAGGTGTGTGTATCCTACCTGGAAATT
TACAACGAGATGGGCTACGATTTGCTGGGGGAAGAGaaccggaaggagga
gggacggcagggagaaagcggcgcGCTGAGGTTGCCTCGCGTGGTGCCAT
TGGAAGACGAAGGTGGGCACTGCCAACTCCGAGGGCTTTCCGTGCACCCC
GtgagcacggaggaggacgcgttGAACCTGCTTTTTGTCGGCGACACAAA
CCGGGCCATCGGGGAGACGGCCACGAACGAGGCGTCTTCCCGTTCCCATT
GCTTGTTCATGCTCACCttggagggacggaggccggggaaggagacggtg
cGGCGGAGCAAGTTGAACCTGGTGGATTTGGCGGGCTCAGAACGGGTCCA
CAAAACGGGGGGAAACGGactgggaagggggggacaGACATTACGGGAGG
CCAAATACATCAATCAGTCCCTCTTTTATTTGGAGAACGTCATTTTGGCT
TTGTACGAGAAGCGTTCGCACGTGCCATACCGGAACAGTTTGATGACGTC
CGTGTTGCGAGACAGTTTAGGGGGAAACTGCCGCACCGTGATGGTGGCGA
CCGTGGCGACCGAACGGAGCCACACGGAAGAATCCTTATCCACTTGTCGG
TTCGCCATGCGCGTGGGCCAGATTCGAAACGATGCGAAACAGAACGAGGA
TCTGGACCCTTTTCAGGTCATCAAACGCCTTCAGACCCAACTGGTGGCCg
cgcgggcggaggcgggatggaccgagaagggcgggaaggaggttccGCTg
agcgaagaggaaaaagatgcGGTGCGAGCCGCCTGTCACGATTTCGTGAG
TAGATGTGAGCCAGGGTATGAGGGGATTTGGACGAGGGGCCGGGGAAGGG
GTTGAATGCTTGGTGAAAGCATTCAATCAACTGATAAGGCGGGCACTGCC
GacatttcccctctttccacacGCTTGGCCTTCAATATACCTCAGGATGT
GGCGGTATCGGGCTTTGTCAATAACAACAAGACCCAGCATCATTTCACTT
TTACGGGCATCCTGGGCATGGAAGTATTGCAAGACGAAGTCTTTGCACAC
CTGGGCCGGGAGGTGGTTCTCAATGCCATGGATGGATATAATTCCACCAT
CTTCGCCTATGGGCAGACCGGCTCAGGGAAGACATTTACCATCACCGGCG
GCCCGGAGAGGTATGCCGACCGAGGACTCATCCCTCGGACATTACAGATG
CTCTTCCAAGAAATACGCCGGCGGGGATTCCACAGCGCAGGGGCCgggac
ggacgaggaggcagcacCGGTCATGTATCAGGTGTGTGTATCCTACCTGG
AAATTTACAACGAGATGGGCTACGATTTGCTGGGGGAAGAGaaccggaag
gaggagggacggcagggagaaagcggcgcGCTGAGGTTGCCTCGCGTGGT
GCCATTGGAAGACGAAGGTGGGCACTGCCAACTCCGAGGGCTTTCCGTGC
ACCCCGtgagcacggaggaggacgcgttGAACCTGCTTTTTGTCGGCGAC
ACAAACCGGGCCATCGGGGAGACGGCCACGAACGAGGCGTCTTCCCGTTC
CCATTGCTTGTTCATGCTCACCttggagggacggaggccggggaaggaga
cggtgcGGCGGAGCAAGTTGAACCTGGTGGATTTGGCGGGCTCAGAACGG
GTCCACAAAACGGGGGGAAACGGactgggaagggggggacaGACATTACG
GGAGGCCAAATACATCAATCAGTCCCTCTTTTATTTGGAGAACGTCATTT
TGGCTTTGTACGAGAAGCGTTCGCACGTGCCATACCGGAACAGTTTGATG
ACGTCCGTGTTGCGAGACAGTTTAGGGGGAAACTGCCGCACCGTGATGGT
GGCGACCGTGGCGACCGAACGGAGCCACACGGAAGAATCCTTATCCACTT
GTCGGTTCGCCATGCGCGTGGGCCAGATTCGAAACGATGCGAAACAGAAC
GAGGATCTGGACCCTTTTCAGGTCATCAAACGCCTTCAGACCCAACTGGT
GGCCgcgcgggcggaggcgggatggaccgagaagggcgggaaggaggttc
cGCTgagcgaagaggaaaaagatgcGGTGCGAGCCGCCTGTCACGATTTC
GTGAGTAGATGTGAGCCAGGGTATGAGGGGATTTGGACGAGGGGCCGGGG
AAGGGGTTGAATGCTTGGTGAAAGCATTCAATCAACTGATAAGGCGGGCA
CTGCCGacatttcccctctttccacacGCTTGGCCTTCAATATACCTCAG
GATGTGGCGGTATCGGGCTTTGTCAATAACAACAAGACCCAGCATCATTT
CACTTTTACGGGCATCCTGGGCATGGAAGTATTGCAAGACGAAGTCTTTG
CACACCTGGGCCGGGAGGTGGTTCTCAATGCCATGGATGGATATAATTCC
ACCATCTTCGCCTATGGGCAGACCGGCTCAGGGAAGACATTTACCATCAC
CGGCGGCCCGGAGAGGTATGCCGACCGAGGACTCATCCCTCGGACATTAC
AGATGCTCTTCCAAGAAATACGCCGGCGGGGATTCCACAGCGCAGGGGCC
gggacggacgaggaggcagcacCGGTCATGTATCAGGTGTGTGTATCCTA
CCTGGAAATTTACAACGAGATGGGCTACGATTTGCTGGGGGAAGAGaacc
ggaaggaggagggacggcagggagaaagcggcgcGCTGAGGTTGCCTCGC
GTGGTGCCATTGGAAGACGAAGGTGGGCACTGCCAACTCCGAGGGCTTTC
CGTGCACCCCGtgagcacggaggaggacgcgttGAACCTGCTTTTTGTCG
GCGACACAAACCGGGCCATCGGGGAGACGGCCACGAACGAGGCGTCTTCC
CGTTCCCATTGCTTGTTCATGCTCACCttggagggacggaggccggggaa
ggagacggtgcGGCGGAGCAAGTTGAACCTGGTGGATTTGGCGGGCTCAG
AACGGGTCCACAAAACGGGGGGAAACGGactgggaagggggggacaGACA
TTACGGGAGGCCAAATACATCAATCAGTCCCTCTTTTATTTGGAGAACGT
CATTTTGGCTTTGTACGAGAAGCGTTCGCACGTGCCATACCGGAACAGTT
TGATGACGTCCGTGTTGCGAGACAGTTTAGGGGGAAACTGCCGCACCGTG
ATGGTGGCGACCGTGGCGACCGAACGGAGCCACACGGAAGAATCCTTATC
CACTTGTCGGTTCGCCATGCGCGTGGGCCAGATTCGAAACGATGCGAAAC
AGAACGAGGATCTGGACCCTTTTCAGGTCATCAAACGCCTTCAGACCCAA
CTGGTGGCCgcgcgggcggaggcgggatggaccgagaagggcgggaagga
ggttccGCTgagcgaagaggaaaaagatgcGGTGCGAGCCGCCTGTCACG
ATTTCGTGAGTAGATGTGAGCCAGGGTATGAGGGGATTTGGACGAGGGGC
CGGGGAAGGGGTTGA

Synonyms

Publications