rna6887, rna6887 (mRNA) Nannochloropsis gaditana

Overview
Namerna6887
Unique Namerna6887
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length665
Alignment locationCM002469.1:716388..716714 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100408g5.6011.mrna
Orig protein idgnl|cribi|Naga_100408g5.6011
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:716388..716714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100408g5gene6657Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23802.1cds6871Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6887rna6887-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6887 ID=rna6887|Name=rna6887|organism=Nannochloropsis gaditana|type=mRNA|length=665bp
CCCTCCCTTCCTTCATGTGGGCATTCGCTGTTCGTAGAAAATGAAGCGTG
CATGTACCCGAAGGATAATTTTTGACCATAGACTCTTCCTTTGTTCCTAC
TTCTCATCCACTTCTCACCCTACCCATCCCTCTCTCCCCCCCCTTTCAAA
TTTCTGGGGCCTTCCCAGCTCCTCGAGTCCTATTCCTACGCCCTCAGCAG
TGATGAGGAGGGAAGAGAGGTGGTTAGGAAGGGCGTGAGAGGAAAGGAAG
TAGGAGGGGGGGGGGGACGACGGCAGAGGGAAGGAACGGGCAAAAGCGAG
ATGTCACATGGGCCGCTAGAAATACACAGGGAGCAGAAAGGTGAGGGGCG
AGGACGGGAAGGAGGAAAGAAGGGAGGGAGGGCAGGGAGGGGAAGAGCTC
CAAGGGCGTGCGTCGGCATTTCGAGGAAGGGAGGGAGGGCGGGGGGGAGG
CGGGGGGGGAAGGCACGGGCACGGCCTGGCAGTCGGGCGTTGGGAGACAG
TGGGCTCTGGACGTGGAGCCGTCGCATCGGGTGGGCTCCACGCAAGGCTT
GGCAAGCCCCCCTCGTCCGTCATGATCTCACCGGAGCTCTCTCACAGGTA
CCCCGCGCCGAAAGGACTTCACGTGGAAAGGCCTGGCGCGGGGCGAGGAC
GAAGGGAGGAAGGGA
back to top

protein sequence of rna6887

>rna6887-protein ID=rna6887-protein|Name=rna6887|organism=Nannochloropsis gaditana|type=polypeptide|length=108bp
MDDVRESNQQNSDHNRNEGMTSPLNPLKAACRPCRQIKVRMFVVFGSPAS
CEVALAGTEMRSTNADARGGRQTNFQFARIPYVISNAWLSDLCCVVQVSC
NILLVEGN
back to top

mRNA from alignment at CM002469.1:716388..716714-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6887 ID=rna6887|Name=rna6887|organism=Nannochloropsis gaditana|type=mRNA|length=327bp|location=Sequence derived from alignment at CM002469.1:716388..716714- (Nannochloropsis gaditana)
ATGGATGACGTGAGGGAATCTAACCAGCAAAATTCCGATCACAACAGAAA
TGAAGGTATGACATCGCCTCTTAATCCTCTCAAGGCAGCCTGTCGGCCTT
GCCGTCAAATAAAGGTACGCATGTTTGTTGTTTTTGGAAGTCCTGCGAGC
TGCGAGGTAGCGCTAGCAGGGACCGAGATGAGAAGCACTAATGCCGACGC
TCGCGGCGGACGGCAGACCAATTTTCAATTTGCACGCATACCTTACGTGA
TATCGAATGCCTGGTTGAGTGATTTATGCTGCGTGGTCCAAGTTTCTTGT
AATATTCTGCTCGTTGAAGGAAATTGA
back to top

Coding sequence (CDS) from alignment at CM002469.1:716388..716714-

>rna6887 ID=rna6887|Name=rna6887|organism=Nannochloropsis gaditana|type=CDS|length=327bp|location=Sequence derived from alignment at CM002469.1:716388..716714- (Nannochloropsis gaditana)
ATGGATGACGTGAGGGAATCTAACCAGCAAAATTCCGATCACAACAGAAA
TGAAGGTATGACATCGCCTCTTAATCCTCTCAAGGCAGCCTGTCGGCCTT
GCCGTCAAATAAAGGTACGCATGTTTGTTGTTTTTGGAAGTCCTGCGAGC
TGCGAGGTAGCGCTAGCAGGGACCGAGATGAGAAGCACTAATGCCGACGC
TCGCGGCGGACGGCAGACCAATTTTCAATTTGCACGCATACCTTACGTGA
TATCGAATGCCTGGTTGAGTGATTTATGCTGCGTGGTCCAAGTTTCTTGT
AATATTCTGCTCGTTGAAGGAAATTGA
back to top
Synonyms
Publications