rna6877, rna6877 (mRNA) Nannochloropsis gaditana

Overview
Namerna6877
Unique Namerna6877
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1529
Alignment locationCM002469.1:700548..701364 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100603g1.2227.mrna
Orig protein idgnl|cribi|Naga_100603g1.2227
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:700548..701364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100603g1gene6649Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23813.1cds6861Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6877rna6877-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6877 ID=rna6877|Name=rna6877|organism=Nannochloropsis gaditana|type=mRNA|length=1529bp
TGCTTCCCCGGACCATGTCGACCCCTTGAAGATTTTCGTAGGCAAAAGCC
GCGGATGCTCTTTGTGAGAGGGATGCGGGATGCTGATGGGTGGTTTATAG
GCATCAAAATAGATTTGCTCTAAAGACAGCGCTGGTGGTCGGCGTGATGC
AACCAAAATGAGTGCCACCATCATTGTGACTTACCTCCTTGTCGTGTGCC
CGGGTGCGAACGCTCTTGCTTCAAACCGAAGCTTCACAACAAAACAAATC
ATCCAACTCTTACACTTTGCCCTCTTCCTTATCATAGAATCCATGACCGG
GAATGTCGTGGTCATTCGGAAACAGATGGCCTTCAGAAGACAGTTTCTCT
TTATCCTGGGCCTCGGCCTCCTCCTTTTCCTTCATGTTGTCAGCATCACC
CACGCGTTCTTTGTCAAGCCACGACCCTTTTCCACCAAGTCCACATATTT
AAATTCCGCGTCTACTTCTTGCTACACTTGGCCACAAGCGCAAGTGTCTC
CTTCACCACTTGTAAGTGCGGCCCGCAGGGGTACGTTGCACTGGACAAAG
CAAAGCTACCCATCCGCACTTCGTGCCATGGGCTCTTCAGAGATACTCTT
GGCCGCTGATTTGAAAAAAGTCTTGTCGGATGACATATACGGGCCCATGT
TCTTGCAGGCCCTTTTTTTGTCCGTCTCGGGCTTCCTGGCTGCTGCTGCG
TTGGCAGGTCTCTCCTTCTCCCTCCTCTCTCCTCCCTTCTTCTTCTTCCT
TCCGCCTTGTCCTCCCACCCGCCCCTCAGGCCATCTCCCTTTCCTTCTTA
TCTACCACATCCGCCCTTGTCTCATGCGTGCAACCCTCCCCGCTTGCCCT
TTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCGGCCCCTTCCC
TCCCTTCCCCGGCCGACGCTTCTCTCGACACGGCCAGCGGTCATCATATA
CCGCGGGGATGAGCTGACGGACGAGTTGCTCGAAGAAGCCTACCAGGAAC
GGGACGAACTCCGAGAACGCGTGGGAGCAACGGAAGAGGAGGATGGAACG
ATCTCGGTCGGCTTCAAAGAACCGCCCACGTTGCCGGCCACGGCGGAGGG
GCGGAGGAAGAAGGAGGAGACACTGGTGAATGCTGGGGAGGTGAACGATT
TCGAGGACTAGGGGGGGACGGGAATGGAGGATGGGAGGGAAGGAAGGAAG
GAGGGAAGGAGGGAGGGAAGGGAAGGTAGGGAAGGTGGACGAGGCACACA
TTTTGCGAAAGAGTAGATTTGTCGGAAAAGGTGGCATGGGGACCGTATGA
AATGAAAATAGCCGCGGGAAGGGTTAAGAGGAAGCGCAATGCCAAAAATG
AAGCAGGTAACGGTAGAATCCATCAAAGAGCCCCAGGGCTTCCTCTTCCT
CTCAACCGCCAACGGTTGATTCACCCGACATTCTTTATGGCCGTGTTACT
TCTCTGTAAAGATTAATGCGTTTAGGCGCTTGTGTGTCTCTGGTGGATGA
CGTGTCTTTCTAGTCCCTTTTACTCATCT
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protein sequence of rna6877

>rna6877-protein ID=rna6877-protein|Name=rna6877|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
AQVLLNQRKKLAHKDVPPLATIKAHLLSSFPSLNDLPCPSPADLTRVDVI
LDKDIPELIAEVDGAFSLPAPPSLPPSRPPVSKLGALFSSPFRGAGNVRE
KGKKSSGGLCLKGALVMALLLVLVIVTVELVWMLWEEGGERWKYAWATVM
EEWVGGKRQEL
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mRNA from alignment at CM002469.1:700548..701364-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6877 ID=rna6877|Name=rna6877|organism=Nannochloropsis gaditana|type=mRNA|length=817bp|location=Sequence derived from alignment at CM002469.1:700548..701364- (Nannochloropsis gaditana)
GCCCAGGTCCTCTTGAACCAGCGAAAAAAACTCGCCCACAAGGACGTGCC
CCCCCTCGCCACCATTAAGGCCCACCTCCTCTCCTCTTTTCCTTCCCTGA
ACGACCTTCCTTGCCCTTCCCCTGCCGATCTGACCCGCGTGGATGTCATT
CTGGACAAGGACATCCCGGAGCTGATCGCCGAAGTCGACGGGGCTTTCTC
CCTTCCCGCCCCTCCCTCCCTTCCACCCTCCCGTCCTCCCGTCTCTAAGC
TCGGGGCCCTGTTTTCATCTCCCTTTCGTGGTGCGGGGAATGTTCGGGAA
AAAGGAAAAAAGTCTTCGGGAGGGCTGTGCTTGAAAGGCGCCCTCGTGAT
GGCGCTCTTGCTCGTGCTTGTGATCGTTACTGTGGAGTTGGTCTGGATGC
TGTGGGAGGAAGGAGGAGAGAGGTGGAAGTACGCATGGGCGACAGTGATG
GAGGAGTGGGTGGGAGGCAAGCGCCAGGAATTGTAACGGCTTTCTCCTCT
CAAAGGGGTGGGGAAATATCCCAAGTCCAGGAGGAGGAAGGAAGTGTCTT
TGAGGAGCACGACTATGTGTCCGAGGGGCTTGATTCGATGGAGTCCGAGA
GAACTGATGCAAATTGGTGTTAAGCAGGTGGGAAAAGTATTGTAAAAGAT
TCTCTTCCATAAGCAGCACTTCTGCAAGAGCCGTAGCTTCAGGGAAAGCA
GAGGCGCGAATCGGCAAACATATCTATATGCTTTTGTGAACAAAACAGTG
GCATAAAATGGAAAAAAGTAATCTATTTACCATAGAGCATCAAAAGAAAC
AGAGAAGTATCCATAGG
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Coding sequence (CDS) from alignment at CM002469.1:700548..701364-

>rna6877 ID=rna6877|Name=rna6877|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at CM002469.1:700548..701364- (Nannochloropsis gaditana)
GCCCAGGTCCTCTTGAACCAGCGAAAAAAACTCGCCCACAAGGACGTGCC
CCCCCTCGCCACCATTAAGGCCCACCTCCTCTCCTCTTTTCCTTCCCTGA
ACGACCTTCCTTGCCCTTCCCCTGCCGATCTGACCCGCGTGGATGTCATT
CTGGACAAGGACATCCCGGAGCTGATCGCCGAAGTCGACGGGGCTTTCTC
CCTTCCCGCCCCTCCCTCCCTTCCACCCTCCCGTCCTCCCGTCTCTAAGC
TCGGGGCCCTGTTTTCATCTCCCTTTCGTGGTGCGGGGAATGTTCGGGAA
AAAGGAAAAAAGTCTTCGGGAGGGCTGTGCTTGAAAGGCGCCCTCGTGAT
GGCGCTCTTGCTCGTGCTTGTGATCGTTACTGTGGAGTTGGTCTGGATGC
TGTGGGAGGAAGGAGGAGAGAGGTGGAAGTACGCATGGGCGACAGTGATG
GAGGAGTGGGTGGGAGGCAAGCGCCAGGAATTGTAA
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Synonyms
Publications