rna6875, rna6875 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6875
Unique Name	rna6875
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2054
Alignment location	CM002469.1:693648..695912 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100603g3.2226.mrna
Orig protein id	gnl\|cribi\|Naga_100603g3.2226
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:693648..695912 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100603g3	gene6647	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23812.1	cds6859	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6875	rna6875-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:693648..695912-
coding sequence from alignment at CM002469.1:693648..695912-

mRNA sequence

>rna6875 ID=rna6875|Name=rna6875|organism=Nannochloropsis gaditana|type=mRNA|length=2054bp
CCCTCTCCCGTTACCCACCCCACTCCCATCTCCACCCAGCGGGACCTGGA
GCGGCTCCTCCGTCATCTCCTCCCTCTCGTCGTCGGGCGCCTCCTCCCAC
TACTCCTCCATTCCCCCGTCCTCCTCCTTCCATCCCTCCCCCTCCTCCAG
CCAGAGCGGAGGGTCCCAAGGCAGTGGTGGTGGAGGAGGAGGGCAGGGAG
GAAGGTACCTCACCACCCAGCCGGGCCGCGACGACGGGGCTCTCCTCTGC
TTGAACGCGGACGTGGTGAAGCGGCCCATATCGGCAACTCTGCGTGAGCC
TCCCCCTCCCTTCCTCTCCTCCCCTCAAGCCAGCACTGTCGTGGCTCCAG
GGACGCTCCCGCCTGCCTCCTTGTCCTTCGCCACGCCTGCGACGTTGGCC
GCAGCCCGTTCCATGTTGCAAGGCTTCTTGCAGGGGAAGTACCCGCTGTC
CTCCACCTGCACCTCTTCCACCTCCTCGGTCGCCTCCACCGGCACCGCGG
CGTCCCGCCCCATCATTGTCCGCCGCGCCCGCCGGGCCTGTGCTTACTGC
CACACGAAAAAAATATCCTGCACCTGCACCCGCCCCTGTCGGCGCTGCCA
GGACTTGAACCTGGTATGCTCGGACTACGTTCCCCGACCTCGGCACCTTG
GTCGGTCAAAGGGGAGCCGGAGCCCGCCCCAGCCACGAGTGGGCCGGACA
GGCGCAGGCTATGGAGGATACGCCAGGCAGGAAGGAGAACGGGAGGGAGG
TAGGGAAATAGGGGAGAGGCCCTCACCCCCTCTGGTCATGCCTGCGGCCA
GAGGGGCAGCGCTTTTCCCGGTCCCTGCCACTGCCACGTCCTCTCTACAG
TCCTACCCTACACAATCACCGTGGGAGGTAAAACCACGGGGAGGGCACGA
AGAAGGAAGGAGGCAACCGGACCACGGGCGCGGCGGCTTCCCCCGAGGAG
CAGCAGGCTCGTCGCTGCCTGGCTTCCAGCAGGCGGCAGCTCCATTTGCT
CCACTTCCCGCCCCACTTTTTTTGCCTTATTCGGGCTACGGCCAGTCGAG
GGTGGCGAACGAGAGCGTCCCTGCCCCTCCCAGTAATTTGCCCACCCCGG
TGGCTCTACGGCGGCAGCAAGAGGAGGTCGTAAAGCAGATGATGTGGGCG
GAAGGGCGGGAGGTAGGGAGGGAGGTAGGGAGGGAGGTAGAGCCGGCTGT
TCCTTCCCTTGCTGGTCTCCCGAGTGCCTTACAGACGGGCAACAGCGGGG
AGGTAGGTGAAGGAAGGAATGATATGGCGGGAAGAGATGAGGAGAGAGGG
TGGGATGCGCACGTGCTGGGGGAGTACGACATCAACCGTTTTTTCGAGGA
CAACGAGTAAGAAAAAATGGAAATGGAAAAGGAAAAGGGGAAAATGGAAG
GGAGGCGTTCCTGTTTGAGGATTCCTCAGGCCGGTTCGGGAAAAAGGAGG
GAAAGGGGGACAGCGAGGGCCAAGGCCACAAATGCAAGAAGACGCATGTC
ATTCATGATGACATCTTGAAGCGTCGTGAGAACATGGACCGCTGGGGGAG
GCGCCGCGACGGACGTGGCAGGTTCGAGGAAGGCAGCTTCCATCGATACG
CGGGGAGGATAGCGAGCAAGGCGTAGGAACGCTTCAAATGTCAAGAGAAA
TTACATCCTTTTGTGTACTTTTATTGAGCTATAAAAAACTTGATAGCATC
GAATGTAAAGCACCGGGGGAAATAGGCGCGAAAATTTCAGGTGTCGAGAT
ATATCCGAAGTCTCGGTATTTTTGATGTAAGGAGTATCCATATAGTATAT
TCTTATCAAGCAGATATCAATTAAGAATTTTGGGGTTAAAAATTTCATGA
GGAGTGCAGGAGGTCGCGTTGAAAGCGAAGACAGAAAAGCCTAGGATACT
CTTGAGAGAAGACAAGGAAAATGGGATCATGAGTAAAGAAGAAATCAGCG
AAAGTGAGAAAAATAGCACAAGCGATGACAACCGGATAATGTCAAAGCAA
TTGATATGCTTGATAAGGCGTGATTCTTTTATCTTCTCTAAATCAGAAAG
TACC

protein sequence of rna6875

>rna6875-protein ID=rna6875-protein|Name=rna6875|organism=Nannochloropsis gaditana|type=polypeptide|length=506bp
MWHDENAFPRREIAGTEAWPRGEMACGGRRREGGEDDQSMAGARGDREDL
AAEVALVASCLERQLHDVVLDLDAATPVLQADAALPASSLAPLVRSLQGL
DALLPELRGLTKMARRAQGGNSNKGRSGADPASSDATASGKALGRQAGGQ
EEDPAEDTKSMATSTEIASSSHMGEAENIRKEGKKRRMDAGPSPGHGMTA
AVERLLGPMPVPSGAGVAARHLPSEPIATHRPRPSFSTSAPPSSERVFPP
YPDSNVGRSAFSCSFSLRQPPFPTAPRVPVLRLLLVVRDVHQALALERAA
QGGGKGVRFHVDVARSVLAGLYRLSLQHFDVVVMESEGSLMGGLEAVRRL
RALEGRLEGLKRMHAVRPVLRTRTKEGGREGGAVVKPPSFVVLVGGGSTK
DWKRRRREGGREGGREGGRQGGVGFEERAYQAGADMVVMKLEDVRFDRLW
RLVHGEEEEAEEEAEEEAEEEIWVDEHNHILLESRPGEEVRGGGVENAED
GSFLGG

mRNA from alignment at CM002469.1:693648..695912-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6875 ID=rna6875|Name=rna6875|organism=Nannochloropsis gaditana|type=mRNA|length=2265bp|location=Sequence derived from alignment at CM002469.1:693648..695912- (Nannochloropsis gaditana)
AGGTTTCCGGCCAAGCTTCGCTGCATCTTATGGCCTTTTTGTCTTGTGAT
CCAACGTGAGACACTACAAACCATTCCATATCCTACTGCACTGTACTTTA
TTGGGTTTTCAATTACATGCTCGTCTGATAGCTGTCAACACAGCACAGAA
ATCTATTGGGGCGAAAAACTCGGATGGGAAGGACGGAGGAGCATCAAAAG
GCAACACCTGGCTCATTATAAAGCTGTTTACTGACTGAACTCCGTATTGC
ATTGCAAGGATCAGGTATTCTTAAAAGTGATACATTTTTTTAAGTAGAAG
ATGCTATCTCGTACTGGAAACTTACCTGGTGCCTATTTCGAGCTTACCAA
CACATCACCGTTTTTGCAACCCTTGCTCATTGATCCTCATTCTGTCATTT
TTAACAGAGAGACCAGCTTGAGTCATTGGGGACTACTTATCAAACGGATT
CTTTTTTCCTCAACGTTGCTTATTCGTCCATCCCTACGGGTGCGTACCAT
GGAAATTAGCCCTCCCTCAGGCCTGCATGCTCGACCTCGATCTTTATTCC
TTGGGGCAAACGGACACCATGACCCCTTTCTCCCTCGCATTCATTCGTGA
CTTTGCCAATCTTTCCTCCTCATGGCAGGAGAAGAATTTCCCCGAGCAGA
CCACGACATTACGGACCCTGGGGCCTTGGTAGGAGGTACGAGGCAACGAG
ACGATCAGCCGGCAGCCCAATGGTCCGACGATCATGCCCGTGAGGCCATG
TGGCACGACGAAAATGCCTTTCCAAGAAGAGAAATTGCGGGGACTGAAGC
ATGGCCTCGGGGGGAAATGGCATGTGGAGGGCGCAGAAGGGAGGGCGGAG
AGGACGACCAGTCCATGGCGGGGGCGCGCGGGGACCGGGAGGATCTCGCC
GCCGAAGTCGCCTTGGTCGCTTCCTGCCTCGAGCGGCAATTGCATGACGT
TGTCCTCGACTTGGACGCTGCCACCCCAGTCCTCCAAGCGGATGCAGCTT
TACCCGCTTCCTCCCTCGCCCCCCTGGTCCGCTCATTGCAGGGCCTGGAC
GCCCTCCTCCCCGAGCTCCGCGGCCTGACAAAAATGGCGCGAAGGGCCCA
GGGAGGAAACTCGAACAAGGGAAGGAGTGGCGCCGACCCCGCGTCCTCTG
ATGCCACTGCGTCGGGGAAGGCTTTGGGCAGACAGGCGGGCGGGCAGGAG
GAAGACCCTGCCGAGGACACCAAGTCCATGGCCACCAGCACGGAGATAGC
CTCGAGCTCGCACATGGGGGAAGCGGAGAATATCAGAAAAGAGGGGAAAA
AAAGGCGGATGGACGCCGGTCCTTCTCCCGGCCATGGCATGACCGCTGCT
GTGGAGCGACTCCTGGGGCCCATGCCGGTGCCTTCGGGCGCGGGCGTGGC
TGCCCGGCACCTCCCTTCCGAACCCATCGCCACGCACCGTCCACGGCCCT
CCTTCTCCACCTCTGCCCCACCATCCTCCGAGAGGGTGTTCCCACCATAT
CCCGATTCCAACGTGGGCCGCTCTGCCTTTTCCTGCTCGTTCTCGCTTCG
ACAGCCACCCTTTCCCACTGCCCCGCGCGTCCCCGTCCTCCGCCTCCTCC
TGGTCGTCCGAGATGTCCACCAGGCCCTAGCTTTGGAACGAGCCGCCCAG
GGCGGGGGGAAGGGCGTGCGTTTCCATGTGGACGTGGCTCGTTCGGTGCT
GGCCGGTCTGTACCGACTTTCGTTGCAGCATTTCGACGTGGTGGTGATGG
AATCTGAAGGGAGCTTGATGGGGGGGTTGGAGGCGGTGAGGAGGTTGAGG
GCTTTGGAAGGTCGTTTGGAAGGCTTGAAACGGATGCATGCGGTTCGTCC
CGTGCTGCGGACGAGGACGAAAGAGGGAGGGAGGGAGGGAGGGGCGGTGG
TCAAGCCTCCTTCCTTCGTGGTCCTCGTGGGTGGCGGGTCGACAAAGGAC
TGGAAGAGACGAAGGAGGGAGGGAGGGCGGGAGGGAGGGAGGGAAGGAGG
GCGGCAGGGAGGAGTGGGATTCGAGGAGCGAGCGTACCAGGCTGGGGCCG
ATATGGTAGTGATGAAATTGGAAGACGTCCGCTTCGATCGTCTCTGGCGC
CTGGTGCATGGGGAGGAGGAGGAAGCGGAGGAGGAAGCGGAGGAGGAAGC
GGAGGAGGAGATATGGGTGGATGAGCACAACCACATCCTGCTCGAGAGTC
GACCAGGCGAGGAAGTGAGAGGAGGCGGCGTGGAGAATGCGGAGGACGGA
TCGTTCTTGGGGGGC

Coding sequence (CDS) from alignment at CM002469.1:693648..695912-

>rna6875 ID=rna6875|Name=rna6875|organism=Nannochloropsis gaditana|type=CDS|length=1518bp|location=Sequence derived from alignment at CM002469.1:693648..695912- (Nannochloropsis gaditana)
ATGTGGCACGACGAAAATGCCTTTCCAAGAAGAGAAATTGCGGGGACTGA
AGCATGGCCTCGGGGGGAAATGGCATGTGGAGGGCGCAGAAGGGAGGGCG
GAGAGGACGACCAGTCCATGGCGGGGGCGCGCGGGGACCGGGAGGATCTC
GCCGCCGAAGTCGCCTTGGTCGCTTCCTGCCTCGAGCGGCAATTGCATGA
CGTTGTCCTCGACTTGGACGCTGCCACCCCAGTCCTCCAAGCGGATGCAG
CTTTACCCGCTTCCTCCCTCGCCCCCCTGGTCCGCTCATTGCAGGGCCTG
GACGCCCTCCTCCCCGAGCTCCGCGGCCTGACAAAAATGGCGCGAAGGGC
CCAGGGAGGAAACTCGAACAAGGGAAGGAGTGGCGCCGACCCCGCGTCCT
CTGATGCCACTGCGTCGGGGAAGGCTTTGGGCAGACAGGCGGGCGGGCAG
GAGGAAGACCCTGCCGAGGACACCAAGTCCATGGCCACCAGCACGGAGAT
AGCCTCGAGCTCGCACATGGGGGAAGCGGAGAATATCAGAAAAGAGGGGA
AAAAAAGGCGGATGGACGCCGGTCCTTCTCCCGGCCATGGCATGACCGCT
GCTGTGGAGCGACTCCTGGGGCCCATGCCGGTGCCTTCGGGCGCGGGCGT
GGCTGCCCGGCACCTCCCTTCCGAACCCATCGCCACGCACCGTCCACGGC
CCTCCTTCTCCACCTCTGCCCCACCATCCTCCGAGAGGGTGTTCCCACCA
TATCCCGATTCCAACGTGGGCCGCTCTGCCTTTTCCTGCTCGTTCTCGCT
TCGACAGCCACCCTTTCCCACTGCCCCGCGCGTCCCCGTCCTCCGCCTCC
TCCTGGTCGTCCGAGATGTCCACCAGGCCCTAGCTTTGGAACGAGCCGCC
CAGGGCGGGGGGAAGGGCGTGCGTTTCCATGTGGACGTGGCTCGTTCGGT
GCTGGCCGGTCTGTACCGACTTTCGTTGCAGCATTTCGACGTGGTGGTGA
TGGAATCTGAAGGGAGCTTGATGGGGGGGTTGGAGGCGGTGAGGAGGTTG
AGGGCTTTGGAAGGTCGTTTGGAAGGCTTGAAACGGATGCATGCGGTTCG
TCCCGTGCTGCGGACGAGGACGAAAGAGGGAGGGAGGGAGGGAGGGGCGG
TGGTCAAGCCTCCTTCCTTCGTGGTCCTCGTGGGTGGCGGGTCGACAAAG
GACTGGAAGAGACGAAGGAGGGAGGGAGGGCGGGAGGGAGGGAGGGAAGG
AGGGCGGCAGGGAGGAGTGGGATTCGAGGAGCGAGCGTACCAGGCTGGGG
CCGATATGGTAGTGATGAAATTGGAAGACGTCCGCTTCGATCGTCTCTGG
CGCCTGGTGCATGGGGAGGAGGAGGAAGCGGAGGAGGAAGCGGAGGAGGA
AGCGGAGGAGGAGATATGGGTGGATGAGCACAACCACATCCTGCTCGAGA
GTCGACCAGGCGAGGAAGTGAGAGGAGGCGGCGTGGAGAATGCGGAGGAC
GGATCGTTCTTGGGGGGC

Synonyms

Publications