rna6873, rna6873 (mRNA) Nannochloropsis gaditana

Overview
Namerna6873
Unique Namerna6873
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length241
Alignment locationCM002469.1:690002..690561 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101102g1.3610.mrna
Orig protein idgnl|cribi|Naga_101102g1.3610
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:690002..690561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101102g1gene6645Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6873rna6873-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23816.1cds6857Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6873 ID=rna6873|Name=rna6873|organism=Nannochloropsis gaditana|type=mRNA|length=241bp
CCCTTACTTCCTCACTCAGGTTCTCCCCCGTCCAAACATGATCTCGAAGA
AGAAGGCCAGCAAGAAGAAGAAAGCGGTCTCCAGCTCCGGAAATTCCGGC
GCCCCCGCCCAAGACGTGGTGGAGTATGTGGGCTGCTTCTCGTCGGAGAA
TATGTTTGTCAACAAAGAATACACCGGGGGGGCTGCGGGGGCGAATTTCA
ACCTGATCCGGCACTCGGCCACGGCCAAAGGCAAACGGTAG
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protein sequence of rna6873

>rna6873-protein ID=rna6873-protein|Name=rna6873|organism=Nannochloropsis gaditana|type=polypeptide|length=85bp
MSSKHDKKKSKHQASSGTGVDALLDAFSNSKNASMAAKTAEWEQKGDAGV
VGDDDLSGIPVIVRYGILGLICLLSFAIRLFAVVR
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mRNA from alignment at CM002469.1:690002..690561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6873 ID=rna6873|Name=rna6873|organism=Nannochloropsis gaditana|type=mRNA|length=560bp|location=Sequence derived from alignment at CM002469.1:690002..690561- (Nannochloropsis gaditana)
ATGTCTTCAAAGCACGATAAAAAGAAGTCGAAGCACCAGGCCAGCAGTGG
GACGGGTGTGGATGCTTTATTGGATGCATTCTCCAATTCTAAGAACGCAT
CTATGGCTGCAAAAACGGCTGAGTGGGAGCAAAAAGGCGACGCAGGGGTA
GTTGGGGACGATGTAAGTCGAAGGGCACACGACGAGAACCACCGTGCGGG
TGTCCGACTGATTTCGTGCCGTTGACATCTGCTGTAAGAATCTTCCGCGT
GCTTTCCCTCTGAGGGACGCCCAAACCGCGTATAGATCCCTATGTGGAAG
CATAGATCTCCCGCGCGACTCTGTCATCTATCACCTCCTTGCATGCAAAG
CCTCTCTCTGCTCTTCCGACTCACCCGTGGCCCCTGCCCTTTCTCCCTCC
GACCCACAGGACCTGTCTGGCATCCCCGTCATTGTCCGCTACGGAATATT
GGGCCTGATTTGCCTCCTCTCCTTCGCCATTCGTCTCTTCGCCGTCGTTC
GGTACGAGAGTGTCATTCACGAGTTCGATCCCTACTTCAATTTCAGGACG
ACCAAGGTAG
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Coding sequence (CDS) from alignment at CM002469.1:690002..690561-

>rna6873 ID=rna6873|Name=rna6873|organism=Nannochloropsis gaditana|type=CDS|length=774bp|location=Sequence derived from alignment at CM002469.1:690002..690561- (Nannochloropsis gaditana)
GTAGGACCTGTCTGGCATCCCCGTCATTGTCCGCTACGGAATATTGGGCC
TGATTTGCCTCCTCTCCTTCGCCATTCGTCTCTTCGCCGTCGTTCGATGT
CTTCAAAGCACGATAAAAAGAAGTCGAAGCACCAGGCCAGCAGTGGGACG
GGTGTGGATGCTTTATTGGATGCATTCTCCAATTCTAAGAACGCATCTAT
GGCTGCAAAAACGGCTGAGTGGGAGCAAAAAGGCGACGCAGGGGTAGTTG
GGGACGATGTAGGACCTGTCTGGCATCCCCGTCATTGTCCGCTACGGAAT
ATTGGGCCTGATTTGCCTCCTCTCCTTCGCCATTCGTCTCTTCGCCGTCG
TTCGATGTCTTCAAAGCACGATAAAAAGAAGTCGAAGCACCAGGCCAGCA
GTGGGACGGGTGTGGATGCTTTATTGGATGCATTCTCCAATTCTAAGAAC
GCATCTATGGCTGCAAAAACGGCTGAGTGGGAGCAAAAAGGCGACGCAGG
GGTAGTTGGGGACGATGTAGGACCTGTCTGGCATCCCCGTCATTGTCCGC
TACGGAATATTGGGCCTGATTTGCCTCCTCTCCTTCGCCATTCGTCTCTT
CGCCGTCGTTCGATGTCTTCAAAGCACGATAAAAAGAAGTCGAAGCACCA
GGCCAGCAGTGGGACGGGTGTGGATGCTTTATTGGATGCATTCTCCAATT
CTAAGAACGCATCTATGGCTGCAAAAACGGCTGAGTGGGAGCAAAAAGGC
GACGCAGGGGTAGTTGGGGACGAT
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Synonyms
Publications