rna6872, rna6872 (mRNA) Nannochloropsis gaditana

Overview
Namerna6872
Unique Namerna6872
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length222
Alignment locationCM002469.1:689290..689805 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103025g1.2206.mrna
Orig protein idgnl|cribi|Naga_103025g1.2206
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:689290..689805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103025g1gene6644Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6872rna6872-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23817.1cds6856Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6872 ID=rna6872|Name=rna6872|organism=Nannochloropsis gaditana|type=mRNA|length=222bp
ATGGGGAGGGGTGGCTTCGATGGCGCGACGGCCTGCATGGACCGGGAACG
TCTCCTGCCTGCCTCTGCTTGTCTGTCTTTAGATGTGTCCTCACGGGTTC
GACTCGTGGCAGGTCTTCCCGTGGCGGCGGTTTTTCTTTCTGACCTGTCC
GATATTTGTCCGGTTGGAATGGTTGGAAGAAAGAAGAGAAAAACACGCAA
AATTCGGGCTAAAGTGAAATAA
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protein sequence of rna6872

>rna6872-protein ID=rna6872-protein|Name=rna6872|organism=Nannochloropsis gaditana|type=polypeptide|length=67bp
MISKKKASKKKKAVSSSGNSGAPAQDVVEYVGCFSSENMFVNKEYTGGAA
GANFNLIRHSATAKGKR
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mRNA from alignment at CM002469.1:689290..689805-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6872 ID=rna6872|Name=rna6872|organism=Nannochloropsis gaditana|type=mRNA|length=516bp|location=Sequence derived from alignment at CM002469.1:689290..689805- (Nannochloropsis gaditana)
CCCTTACTTCCTCACTCAGGTTCTCCCCCGTCCAAACATGATCTCGAAGA
AGAAGGCCAGCAAGAAGAAGAAAGCGGTCTCCAGCTCCGGTAGAGAGGGT
GGGGAAGAGAAATGGGGGGAGGGAGGGAAAGAGGAAGGAAGGGAGGGAGG
GAAAAAGGGAGGGAGGGAGGGAGGAGGGGAAGGAAAGTGCGTTGTTGCTC
TGTCAGCATGGCCCCCTGTCGCTGAGGCGTCTATTTCTGTCGACCCAAAA
ATCAATGCAAAACATCCTCCACTCTCGTTCCCGATATAGTATGGATGTCG
CCTGCCACGGCACCCTTGAGCTCACCACTCCTCATCCTTGTGCTCTCCCG
CCCCCCCTTGACAGGAAATTCCGGCGCCCCCGCCCAAGACGTGGTGGAGT
ATGTGGGCTGCTTCTCGTCGGAGAATATGTTTGTCAACAAAGAATACACC
GGGGGGGCTGCGGGGGCGAATTTCAACCTGATCCGGCACTCGGCCACGGC
CAAAGGCAAACGGTAG
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Coding sequence (CDS) from alignment at CM002469.1:689290..689805-

>rna6872 ID=rna6872|Name=rna6872|organism=Nannochloropsis gaditana|type=CDS|length=408bp|location=Sequence derived from alignment at CM002469.1:689290..689805- (Nannochloropsis gaditana)
GAAATTCCGGCGCCCCCGCCCAAGACGTGGTGGAGTATGTGGGCTGCTTC
TCGTCGGAGAATATGTTTGTCAACAAAGAATACACCGGGGGGGCTGCGGG
GGCGAATTTCAACCTGATCCGGCACTCGGCCACGGCCAAAGGCAAACGGT
AGATGATCTCGAAGAAGAAGGCCAGCAAGAAGAAGAAAGCGGTCTCCAGC
TCCGGAAATTCCGGCGCCCCCGCCCAAGACGTGGTGGAGTATGTGGGCTG
CTTCTCGTCGGAGAATATGTTTGTCAACAAAGAATACACCGGGGGGGCTG
CGGGGGCGAATTTCAACCTGATCCGGCACTCGGCCACGGCCAAAGGCAAA
CGGTAGATGATCTCGAAGAAGAAGGCCAGCAAGAAGAAGAAAGCGGTCTC
CAGCTCCG
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Synonyms
Publications