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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100276g3.9387.mrna |
| Orig protein id | gnl|cribi|Naga_100276g3.9387 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:164949..167450 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna687 ID=rna687|Name=rna687|organism=Nannochloropsis gaditana|type=mRNA|length=453bp
GAGAATCGTTCCTTATTTTTCTGCAAACATTTGCTTGTAATTTTAACTTC
GACAGCTTATCCTACCGACAGGCATCACATAGTACGAGGAGGTTACGCGT
TCTACGAAAGCAAATAAAATGGCTGACAATTCTCTCTGGTCACTGCTTGT
CCTTATTCTCCTCATTATTGCCGATATCATTGCTGTCTCTAAAGTTTGTC
GGAGCGGGCGCTCCACCTTAGTGATTGTACTTTGGACTCTCCTCATATTC
TTCTTTCCTGTGGGTGGCCTCCTCATTTGGTTCTTGCTCGGCCCACGAGA
ATACAGCGCAAATGCGCCAGTGCAGAATGCAGTGAGCTGAGAATTGAATG
GACGACATGTGGTCCAAGAGAATGACGGGATGAAGTGGGCGAAATGAGGG
ACAAATCGTGAGGGTTAGCGGCATCTATTAAAATCAACAAGGACCACAAA
ATG back to topprotein sequence of rna687 >rna687-protein ID=rna687-protein|Name=rna687|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MRFGRVCVCPLLTLVVLCLVCEGSSTRAIHWVKTGARSKQGFLFQSRDLF
RGEEVAGNKESQSRAVAAWVRKKENGNDDGEKPRKPQKGKSRKANKNSPR
PPVFTARIAILGSPSEEWGQGVRERLISEGWMEERVQVLPIPSPQAYPEA
KWMAYLREGLKLRNTTFVIAAPGPAVGQVLRFLEKHPLRGSILLGPEASS
DTRSWDYKRLRQHCPFFGLIYAMEGEEEEYVGVGPGDREGARGRGRQGWL back to topmRNA from alignment at CM002456.1:164949..167450- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna687 ID=rna687|Name=rna687|organism=Nannochloropsis gaditana|type=mRNA|length=2502bp|location=Sequence derived from alignment at CM002456.1:164949..167450- (Nannochloropsis gaditana)
GTTTGGTGGCAAAAGCTTAAGGGAATTATCTTCGGCATGAGATTTGGTCG
GGTATGCGTCTGCCCTCTCCTCACCCTCGTTGTACTTTGCCTTGTCTGTG
AGGGCAGCAGCACCAGGGCCATACACTGGGTGAAAACAGGCGCCCGTTCA
AAACAAGGCTTCCTTTTTCAATCCCGTGATCTGTTCCGGGGAGAAGAAGT
TGCCGGAAATAAAGAATCCCAGTCGCGGGCGGTGGCAGCTTGGGTCCGGT
GGGTTAATGCATACGTACGCGTCTTGGGGGTGGGAGGAGGCTTTGATAAT
ACAATGCTCAAAGGGTAAATGCGAGCATGGTTTAGTTCTGTGTTTTAAAG
AGAGAACATGCATGCTCAGAAATCAGGGAAAAGTGGGCATCTTGTTTCAC
TGATGGGAATTGGTAGGGAGTCACTTAAGCGCTTAGTCGTCCTGTCTTAC
AGGAAAAAAGAGAATGGTAATGATGACGGGGAAAAACCAAGGAAGCCGCA
AAAAGGTGCGTGTAAGACCGGAAGGAGGACTGATAGGACGCACGACTGAG
TACGGACCTCTGAACTTCGCTCTGGTTCCAAACCATTCTGACCAGGCAAA
AGCCGCAAGGCAAACAAGAATTCCCCCCGCCCCCCCGTCTTCACGGCCCG
CATCGCGATCTTGGGCAGTCCAAGCGAAGAGTGGGGACAAGGCGTGCGGG
AACGTCTCATAAGCGAAGGTAACTAGGCCGCTACGGCTGGAGCGAATGCC
TTGAAAACCAGGGGGTCTATGGCTCCCATCTTGTCTTTTCGCCTGCCAAG
AATCCAACCGTTCCGTCCCCTGTGGACGTCTTTTCTTTTCCGGCTTGTCT
TAGGTTGGATGGAGGAGCGCGTTCAAGTTCTACCGATCCCCTCCCCGCAA
GCATATCCAGAGGCGAAATGGATGGCATATCTACGGTGGGTTTCTCTCTG
GCGTCTATCCTGAGAGTAAGGTCCGAAGATGGAGACAATCTATCCACAAG
CTCCATCCGCTTCAAACATGTGAAGAAGTCTATGTCAGTGTGGCCTTCCC
ACTCCTTCACGCATTCCAATCATTGATCCCAGCGAGGGTGCCGGCCGATC
CCCTTCCTATTCGTTGTCACCGGCCGATCCCCTTCCTATTCGTTGTCACC
GGCCGATCCCCTTCCTATTCGTTGTCACCGGCCGATCCCCTTCCTATTCG
TTGTCAGCCTCCACGCCTTGCGCGCGCCCGAACATCTTGTTTTCTTACTG
TCCGATATTAACTCATTTGCGAGCCATCCCCCCCCCCGCTCCCTTCCTTC
TTCTTGTTGAATGAGCAGGGAGGGACTCAAGTTGCGCAATACAACCTTCG
TCATTGCCGCTCCCGGCCCCGCCGTGGGTCAGGTCCTTCGCTTCCTGGAA
AAGCACCCTCTGAGGGGGAGCATACTGCTTGGTGGGTGCTAGAAGAGGGA
GGGTATATGGAATTGAGCGATGCAGTGGGAAGATGACCGAGTGAAGCTTA
GAGGAGGTTAGGCGTGCACCGTGGGTTTTCGCAGAAGAGGACATGGAGGA
AAGTCGCGGAGCCGTCGGCCGCGTATTGGAAAAAGGCCGGAGCTCATACA
TGTAGCCCTGACTTATTATTTTTTGTCGGTCTTTGCCTCTTTGGGGTGCC
TCCATCCTATTCCAGGACCTGAGGCCAGCTCTGACACCCGGTCGTGGGAC
TACAAGAGGTTGCGGCAGCACTGCCCTTTCTTCGGTTTGATTTACGCCAT
GGAGGGCGAAGAGGAAGAGTACGTGGGAGTAGGGCCAGGAGACAGGGAGG
GCGCGAGAGGTAGGGGTCGGCAAGGTTGGCTGTAAAAGTCGAATAGGAAG
GAGACTGCATGGGGTTGAGGAATACCCGCACGGCTGAGAGGAATGCTGTA
AAAAAGAGGTAGCAATGGCACGACTCTTTCCTAGCCGTGATATCTGCGGG
GGACTTGGCATGATTACCCATTTTCCGCTCATCGTGGCTTTGTCATCTCT
TTCATCGCCGCCCCTCCCTCTGATCTCATTCTAGGTGGAGGCCATCAGCG
ACTGCTGAGGAGGTTCGAGAGGGCCTTGGTCTCGCTCCTTACCCGTTCGG
CATTCGCGCTACTCCCCCAGGCCAGGAAATCAGGTAGTTATGTAGAAATG
GAAGGTTATCAAATGGCGGGCTGACGACTTTCCCCCACCACCTTTGTGTC
TCTTTGTGATTGCACGTCTACCCTCATGTCTGGTCTCTTGGGATGTCCTC
CGCCCTGACTCCTATTATTTAAATGTGACAGAGCGATTCAGGCCCTCATC
CGTGATTGGCAGTTCTTAGAGTCGCTGGGTATGGGTCCGATCCAGCTCGT
CGGCGAGGACGAGGATGAGGAAAGGGAGAGGACAGGGCGAGATATCCCAC
CGATGGAGGAGGGGAACGCGTGATGGAGATTGACAAAGGACGTGAAGGGA
TTAGAGAAATTACGTGTATAGACAAATATAAATAAAAGTGTTCAAGCTTG
AG back to topCoding sequence (CDS) from alignment at CM002456.1:164949..167450- >rna687 ID=rna687|Name=rna687|organism=Nannochloropsis gaditana|type=CDS|length=4518bp|location=Sequence derived from alignment at CM002456.1:164949..167450- (Nannochloropsis gaditana)
GACCTGAGGCCAGCTCTGACACCCGGTCGTGGGACTACAAGAGGTTGCGG
CAGCACTGCCCTTTCTTCGGTTTGATTTACGCCATGGAGGGCGAAGAGGA
AGAGTACGTGGGAGTAGGGCCAGGAGACAGGGAGGGCGCGAGAGGTAGGG
GTCGGCAAGGTTGGCTGTAAGGAGGGACTCAAGTTGCGCAATACAACCTT
CGTCATTGCCGCTCCCGGCCCCGCCGTGGGTCAGGTCCTTCGCTTCCTGG
AAAAGCACCCTCTGAGGGGGAGCATACTGCTTGGTTGGATGGAGGAGCGC
GTTCAAGTTCTACCGATCCCCTCCCCGCAAGCATATCCAGAGGCGAAATG
GATGGCATATCTACGGCAAAAGCCGCAAGGCAAACAAGAATTCCCCCCGC
CCCCCCGTCTTCACGGCCCGCATCGCGATCTTGGGCAGTCCAAGCGAAGA
GTGGGGACAAGGCGTGCGGGAACGTCTCATAAGCGAAGGAAAAAAGAGAA
TGGTAATGATGACGGGGAAAAACCAAGGAAGCCGCAAAAAGATGAGATTT
GGTCGGGTATGCGTCTGCCCTCTCCTCACCCTCGTTGTACTTTGCCTTGT
CTGTGAGGGCAGCAGCACCAGGGCCATACACTGGGTGAAAACAGGCGCCC
GTTCAAAACAAGGCTTCCTTTTTCAATCCCGTGATCTGTTCCGGGGAGAA
GAAGTTGCCGGAAATAAAGAATCCCAGTCGCGGGCGGTGGCAGCTTGGGT
CCGGACCTGAGGCCAGCTCTGACACCCGGTCGTGGGACTACAAGAGGTTG
CGGCAGCACTGCCCTTTCTTCGGTTTGATTTACGCCATGGAGGGCGAAGA
GGAAGAGTACGTGGGAGTAGGGCCAGGAGACAGGGAGGGCGCGAGAGGTA
GGGGTCGGCAAGGTTGGCTGTAAGGAGGGACTCAAGTTGCGCAATACAAC
CTTCGTCATTGCCGCTCCCGGCCCCGCCGTGGGTCAGGTCCTTCGCTTCC
TGGAAAAGCACCCTCTGAGGGGGAGCATACTGCTTGGTTGGATGGAGGAG
CGCGTTCAAGTTCTACCGATCCCCTCCCCGCAAGCATATCCAGAGGCGAA
ATGGATGGCATATCTACGGCAAAAGCCGCAAGGCAAACAAGAATTCCCCC
CGCCCCCCCGTCTTCACGGCCCGCATCGCGATCTTGGGCAGTCCAAGCGA
AGAGTGGGGACAAGGCGTGCGGGAACGTCTCATAAGCGAAGGAAAAAAGA
GAATGGTAATGATGACGGGGAAAAACCAAGGAAGCCGCAAAAAGATGAGA
TTTGGTCGGGTATGCGTCTGCCCTCTCCTCACCCTCGTTGTACTTTGCCT
TGTCTGTGAGGGCAGCAGCACCAGGGCCATACACTGGGTGAAAACAGGCG
CCCGTTCAAAACAAGGCTTCCTTTTTCAATCCCGTGATCTGTTCCGGGGA
GAAGAAGTTGCCGGAAATAAAGAATCCCAGTCGCGGGCGGTGGCAGCTTG
GGTCCGGACCTGAGGCCAGCTCTGACACCCGGTCGTGGGACTACAAGAGG
TTGCGGCAGCACTGCCCTTTCTTCGGTTTGATTTACGCCATGGAGGGCGA
AGAGGAAGAGTACGTGGGAGTAGGGCCAGGAGACAGGGAGGGCGCGAGAG
GTAGGGGTCGGCAAGGTTGGCTGTAAGGAGGGACTCAAGTTGCGCAATAC
AACCTTCGTCATTGCCGCTCCCGGCCCCGCCGTGGGTCAGGTCCTTCGCT
TCCTGGAAAAGCACCCTCTGAGGGGGAGCATACTGCTTGGTTGGATGGAG
GAGCGCGTTCAAGTTCTACCGATCCCCTCCCCGCAAGCATATCCAGAGGC
GAAATGGATGGCATATCTACGGCAAAAGCCGCAAGGCAAACAAGAATTCC
CCCCGCCCCCCCGTCTTCACGGCCCGCATCGCGATCTTGGGCAGTCCAAG
CGAAGAGTGGGGACAAGGCGTGCGGGAACGTCTCATAAGCGAAGGAAAAA
AGAGAATGGTAATGATGACGGGGAAAAACCAAGGAAGCCGCAAAAAGATG
AGATTTGGTCGGGTATGCGTCTGCCCTCTCCTCACCCTCGTTGTACTTTG
CCTTGTCTGTGAGGGCAGCAGCACCAGGGCCATACACTGGGTGAAAACAG
GCGCCCGTTCAAAACAAGGCTTCCTTTTTCAATCCCGTGATCTGTTCCGG
GGAGAAGAAGTTGCCGGAAATAAAGAATCCCAGTCGCGGGCGGTGGCAGC
TTGGGTCCGGACCTGAGGCCAGCTCTGACACCCGGTCGTGGGACTACAAG
AGGTTGCGGCAGCACTGCCCTTTCTTCGGTTTGATTTACGCCATGGAGGG
CGAAGAGGAAGAGTACGTGGGAGTAGGGCCAGGAGACAGGGAGGGCGCGA
GAGGTAGGGGTCGGCAAGGTTGGCTGTAAGGAGGGACTCAAGTTGCGCAA
TACAACCTTCGTCATTGCCGCTCCCGGCCCCGCCGTGGGTCAGGTCCTTC
GCTTCCTGGAAAAGCACCCTCTGAGGGGGAGCATACTGCTTGGTTGGATG
GAGGAGCGCGTTCAAGTTCTACCGATCCCCTCCCCGCAAGCATATCCAGA
GGCGAAATGGATGGCATATCTACGGCAAAAGCCGCAAGGCAAACAAGAAT
TCCCCCCGCCCCCCCGTCTTCACGGCCCGCATCGCGATCTTGGGCAGTCC
AAGCGAAGAGTGGGGACAAGGCGTGCGGGAACGTCTCATAAGCGAAGGAA
AAAAGAGAATGGTAATGATGACGGGGAAAAACCAAGGAAGCCGCAAAAAG
ATGAGATTTGGTCGGGTATGCGTCTGCCCTCTCCTCACCCTCGTTGTACT
TTGCCTTGTCTGTGAGGGCAGCAGCACCAGGGCCATACACTGGGTGAAAA
CAGGCGCCCGTTCAAAACAAGGCTTCCTTTTTCAATCCCGTGATCTGTTC
CGGGGAGAAGAAGTTGCCGGAAATAAAGAATCCCAGTCGCGGGCGGTGGC
AGCTTGGGTCCGGACCTGAGGCCAGCTCTGACACCCGGTCGTGGGACTAC
AAGAGGTTGCGGCAGCACTGCCCTTTCTTCGGTTTGATTTACGCCATGGA
GGGCGAAGAGGAAGAGTACGTGGGAGTAGGGCCAGGAGACAGGGAGGGCG
CGAGAGGTAGGGGTCGGCAAGGTTGGCTGTAAGGAGGGACTCAAGTTGCG
CAATACAACCTTCGTCATTGCCGCTCCCGGCCCCGCCGTGGGTCAGGTCC
TTCGCTTCCTGGAAAAGCACCCTCTGAGGGGGAGCATACTGCTTGGTTGG
ATGGAGGAGCGCGTTCAAGTTCTACCGATCCCCTCCCCGCAAGCATATCC
AGAGGCGAAATGGATGGCATATCTACGGCAAAAGCCGCAAGGCAAACAAG
AATTCCCCCCGCCCCCCCGTCTTCACGGCCCGCATCGCGATCTTGGGCAG
TCCAAGCGAAGAGTGGGGACAAGGCGTGCGGGAACGTCTCATAAGCGAAG
GAAAAAAGAGAATGGTAATGATGACGGGGAAAAACCAAGGAAGCCGCAAA
AAGATGAGATTTGGTCGGGTATGCGTCTGCCCTCTCCTCACCCTCGTTGT
ACTTTGCCTTGTCTGTGAGGGCAGCAGCACCAGGGCCATACACTGGGTGA
AAACAGGCGCCCGTTCAAAACAAGGCTTCCTTTTTCAATCCCGTGATCTG
TTCCGGGGAGAAGAAGTTGCCGGAAATAAAGAATCCCAGTCGCGGGCGGT
GGCAGCTTGGGTCCGGACCTGAGGCCAGCTCTGACACCCGGTCGTGGGAC
TACAAGAGGTTGCGGCAGCACTGCCCTTTCTTCGGTTTGATTTACGCCAT
GGAGGGCGAAGAGGAAGAGTACGTGGGAGTAGGGCCAGGAGACAGGGAGG
GCGCGAGAGGTAGGGGTCGGCAAGGTTGGCTGTAAGGAGGGACTCAAGTT
GCGCAATACAACCTTCGTCATTGCCGCTCCCGGCCCCGCCGTGGGTCAGG
TCCTTCGCTTCCTGGAAAAGCACCCTCTGAGGGGGAGCATACTGCTTGGT
TGGATGGAGGAGCGCGTTCAAGTTCTACCGATCCCCTCCCCGCAAGCATA
TCCAGAGGCGAAATGGATGGCATATCTACGGCAAAAGCCGCAAGGCAAAC
AAGAATTCCCCCCGCCCCCCCGTCTTCACGGCCCGCATCGCGATCTTGGG
CAGTCCAAGCGAAGAGTGGGGACAAGGCGTGCGGGAACGTCTCATAAGCG
AAGGAAAAAAGAGAATGGTAATGATGACGGGGAAAAACCAAGGAAGCCGC
AAAAAGATGAGATTTGGTCGGGTATGCGTCTGCCCTCTCCTCACCCTCGT
TGTACTTTGCCTTGTCTGTGAGGGCAGCAGCACCAGGGCCATACACTGGG
TGAAAACAGGCGCCCGTTCAAAACAAGGCTTCCTTTTTCAATCCCGTGAT
CTGTTCCGGGGAGAAGAAGTTGCCGGAAATAAAGAATCCCAGTCGCGGGC
GGTGGCAGCTTGGGTCCG back to top
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