rna6867, rna6867 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6867
Unique Name	rna6867
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1160
Alignment location	CM002469.1:679101..681520 -

Link to JBrowse

Properties


Property Name	Value
Product	kynurenine 3-monooxygenase
Orig transcript id	gnl\|cribi\|Naga_100623g2.2040.mrna
Orig protein id	gnl\|cribi\|Naga_100623g2.2040
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:679101..681520 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100623g2	gene6639	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6867	rna6867-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23823.1	cds6851	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:679101..681520-
coding sequence from alignment at CM002469.1:679101..681520-

mRNA sequence

>rna6867 ID=rna6867|Name=rna6867|organism=Nannochloropsis gaditana|type=mRNA|length=1160bp
AGCCCTTCCTCCGCCCCTTCCTCCGCCCCTTCCTCGCCCCCCGCCCTCCC
TCCCTACCTCTTGGAGGAGCAAGAGGCGCTTCATTTCCGGAGCGTCGTGG
TCTCCTTCTCGGTGTCGACCTCCCGTACCTCCCCTTCCCTCCTCATCAAC
CTTGCGGGCGGGCGCTTGTTGTCGTGGGATTTGCGAGGGGTGGGGAAGAA
GAGGACGTTGGAAGGGAGACGGCAAGGGAGGTATCGCTTGAGGGCAGAGT
TCAACGAGGGAGGGGGGGAGGGAGGGAGGGAACGCTTGGTCGCGGCAGGA
AGTGAAGACGGGCGTGTGTGCCTGTGGAAGGAAGGGCGGCGGGAGGGCGG
GGGGAAGGAAGGGGCGGAGGAACCGATGGAGGAATTGAAGGGGCATGGCG
GGGTGGTGAACGACGTTGCCTGGTGCCCGTCGAATCCGCATGTACTCGCC
TCCTGCTCGGATGACGGCTCAGTACGGGTCTGGGGCCCAGAGGGCGGGGG
GGAGGGCGGGAAGGAGGGCGGGATGCTGGTCCACGTGAAAGGATAGCGAC
TGAGCCTGCTGTGTGTAGATGAGAGGAAGGGGGGGCAGGGAGGGAGGGAG
GGAGGGAGGGAGGGACATAGGGGCGCAGTGTACTTCAGGCGGGGGAAGTG
GTTTCTGAGTGGATTGTACAGACGACAGGGAGGGAGGGAAGGGAGGGTAG
GAGGGAGGGAAGGAGGAAGGGAAGGAGGCAGGATTCCGATGTGTAAGCGT
TGTCAAGAATAGGAAGGGAGGCTTGGGTAGTGGTCTCGGCCTCGCCACTC
GTAAAGGAAAAAAACGTTGTGGGGGGAAAGGGGAATAGGAAGGGAAAGAC
GACGGCAGGAGCTACAGAGGGTCGAGTCGGTGGGAAAGAAAAAGCAACCG
ATGGGAAATGGTCTTGGATGGATCGTATCTTCGTATCTTGAACCTGTATC
CAACCAGGTTGAAGTTCGATCCAAGCACATTGATAGTACGATCCACGTGG
CCGGGGTTGTCAGAGGGCGAGGCTCCCGTGAGCACGTAGACTAGCAGGGC
GCCTGGCGGGCACAACATTTTTAGAGTCGATGAATTGGTGTGTCATTACT
TTGTTGGGGTATAAATGCGTAGCCATTCGTCTTCCCCTGCCCCCTTTATC
ATAAATCGTG

protein sequence of rna6867

>rna6867-protein ID=rna6867-protein|Name=rna6867|organism=Nannochloropsis gaditana|type=polypeptide|length=558bp
MPQLRLNSSNFCCTFVAVLFVSFFLSATCAFRFPRRTSALLRHRTYAATS
AFHPTSTNVHLPASTAIVGAGPTGLFTALMLARRGYQNITVYDRLPRPDD
PSSPTWGNPYRSYNLGLGARGQIALRAADAWESIEPFCAQAIGRKDWTPE
QGERPEQIYTDREYKTQVIQRDRIASCLLGELERKHGDQVSVWHNVECVG
LTWLDEANPGPEASPSSAEIGEKGVRLRLHRQCEGQELEQWTTEARWVVG
ADGVRSALRSALEVKTAPGGHHGQTQKERVRTIKLPERNEFVYKILPLDL
RPKYGTGPGWRPDLNYSARSKGEVTIEALPTREGIFVGVVLFRPDSSAIA
KIQGKEDAREFFAGSFPQFLDVIREEDLARFATGPTFRLPSFSYCGPSIF
YRDNTLLLGDCIHSVKPYFGLGLNSALEDVMALDKCLSESEDDVSKALPL
FSSRTAPQAKALVEFQASFDYNANTLEGFLRFVLPLILDGIFHRYFPAFF
APNGIRLLQDHRSTFRQTRRRKQRDRIGQAVILGVLLTGIGKGLGWAVKV
AARILLKG

mRNA from alignment at CM002469.1:679101..681520-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6867 ID=rna6867|Name=rna6867|organism=Nannochloropsis gaditana|type=mRNA|length=2420bp|location=Sequence derived from alignment at CM002469.1:679101..681520- (Nannochloropsis gaditana)
ATGTACCTTTTGTACTCTACTCACTCTTAGACAGAGAAAGGACTAGAATA
TGCCACAGCTGCGCCTGAACTCTTCAAATTTCTGCTGTACCTTCGTCGCG
GTACTGTTCGTCTCCTTTTTTCTGAGCGCCACATGCGCTTTCCGATTCCC
GCGTAGAACCAGTGCATTGCTCCGACATCGCACGTATGCAGCGACTTCCG
CCTTCCATCCCACTTCCACCAATGTCCATTTGCCAGCGAGCACCGCTATA
GTGGGTGCAGGTCCCACCGGTTTGTTCACTGCCTTGATGTTGGCGCGTCG
TGGGTATCAAAACATCACGGTATACGACAGGCTGCCACGCCCCGACGACC
CGTCTTCACCCACATGGGGTAACCCGTACCGGAGTTACAACCTGGGATTG
GGGGCACGGGGCCAAATTGCCTTGCGGGCGGCAGACGCTTGGGAGTCGAT
CGAACCCTTTTGCGCCCAGGCGATTGGGAGAAAAGACTGGACGCCAGAGC
AAGGGGAACGACCGGAGCAAATTTACACGGACAGGGAGTACAAGACACAA
GTGATACAAAGGGACCGGATTGCCAGCTGCCTCTTGGGGGAGCTGGAAAG
GAAACACGGGGACCAAGTCTCGGTCTGGCACAATGTGGAATGTGTGGGAT
TGACCTGGTTGGACGAGGCAAATCCTGGGCCGGAGGCGAGCCCCTCCTCC
GCAGAGATAGGGGAAAAAGGCGTCCGCCTTCGCCTCCACCGGCAATGCGA
GGGACAAGAGCTGGAGCAATGGACAACAGAGGCACGCTGGGTGGTCGGGG
CTGACGGGGTCCGTTCTGCCTTGCGCAGTGCCCTGGAAGTGAAGACAGCC
CCCGGGGGTCACCATGGACAGACACAAAAAGAACGCGTTCGTACCATCAA
ACTGCCCGAACGCAACGAATTTGTCTATAAAATCCTCCCACTGGATCTCA
GGCCCAAATACGGCACGGGCCCCGGGTGGCGCCCGGATTTGAATTATTCG
GCACGGAGCAAAGGCGAGGTTACCATCGAAGCGCTGCCTACACGGGAAGG
GATCTTCGTCGGGGTAGTCCTCTTCCGACCAGATTCCTCCGCCATAGCCA
AGATCCAAGGCAAGGAAGACGCCAGGGAATTCTTCGCGGGCTCTTTCCCT
CAGTTCCTCGACGTGATCCGGGAGGAGGATTTGGCACGCTTCGCGACCGG
CCCGACCTTCCGCCTCCCTAGTTTTTCGTATTGCGGTCCCAGCATTTTCT
ACCGGGACAACACTTTGCTCCTGGGAGATTGCATCCATTCCGTCAAGCCA
TACTTCGGCCTGGGGCTGAACTCGGCCCTGGAGGACGTGATGGCCTTGGA
CAAGTGCCTGTCCGAGTCTGAGGACGATGTCAGCAAGGTAGGGGCAGGGG
GGCATAGGGGCGAAGAGGCCCATGCGTTACCCTGCCTCAGCCCCTGTCTC
CCTCACTTGTCCTCAACCCTTGTTCCTTTCGTCCGTTGGATGTTTCCTTC
CCTGCCGCGCCCCGTCTCTGTCGACGGCTGTTCCGTTCGCACTTGTCTTC
TTGTGGCTCTTCTCTCCCTCTTCTTCCTTGTTCAAGTCAGTCTTTGCTAC
CAAAGCCTTTACAATCGATAGCTCTCCCTCCCCTCCCCCCCTTCTTTTTA
CTAATTTCCATCTCTTTCTCAGTGTCTGTCCTTTGGCCCCCTCGTTGAAT
GTGGTATCTCCGCCTGGGGTCCACGCGCCTGGTTCGGCCTCTCTTCCCCC
CCCTGTTGCCTCCGTCTCCACATCTTCCCCACCCAACGACCCTCCCTTCC
CCTCCTCCCTCCACTCTTTCCAGGCCCTTCCTCTCTTTTCCTCCCGCACG
GCCCCTCAAGCCAAGGCACTCGTTGAGTTTCAGGCTTCGTTCGACTACAA
CGCCAATACGTTGGAAGGATTTCTCCGTTTCGTCCTCCCGCTGATTTTGG
ACGGGATTTTCCATCGGTATTTCCCGGCATTTTTCGCCCCGAACGGGATT
CGTCTACTCCAGGACCATCGCTCCACCTTCCGACAGACGCGCCGACGGAA
GCAAAGAGATCGGATTGGCCAAGCTGTAATTCTCGGAGTTTTGCTGACGG
GAATAGGCAAAGGCTTAGGCTGGGCAGTGAAGGTGGCAGCGCGGATCCTC
TTGAAAGGGTAACGGTTTTTTGAAAAAGGGCAGTGTGCCGTTTAAAAAAA
AAGAAAATAAAAATCTCTCGATGGCAGGCGTGAAAATGCTTGCCACCGCC
TCGGCCGGGACAAAGGACCAGGCTCACGATTTATGATAAAGGGGGCAGGG
GAAGACGAATGGCTACGCATTTATACCCCAACAAAGTAATGACACACCAA
TTCATCGACTCTAAAAATGTTGTGCCCGCCAGGCGCCCTGCTAGTCTACG
TGCTCACGGGAGCCTCGCCC

Coding sequence (CDS) from alignment at CM002469.1:679101..681520-

>rna6867 ID=rna6867|Name=rna6867|organism=Nannochloropsis gaditana|type=CDS|length=3354bp|location=Sequence derived from alignment at CM002469.1:679101..681520- (Nannochloropsis gaditana)
GCCCTTCCTCTCTTTTCCTCCCGCACGGCCCCTCAAGCCAAGGCACTCGT
TGAGTTTCAGGCTTCGTTCGACTACAACGCCAATACGTTGGAAGGATTTC
TCCGTTTCGTCCTCCCGCTGATTTTGGACGGGATTTTCCATCGGTATTTC
CCGGCATTTTTCGCCCCGAACGGGATTCGTCTACTCCAGGACCATCGCTC
CACCTTCCGACAGACGCGCCGACGGAAGCAAAGAGATCGGATTGGCCAAG
CTGTAATTCTCGGAGTTTTGCTGACGGGAATAGGCAAAGGCTTAGGCTGG
GCAGTGAAGGTGGCAGCGCGGATCCTCTTGAAAGGGTAAATGCCACAGCT
GCGCCTGAACTCTTCAAATTTCTGCTGTACCTTCGTCGCGGTACTGTTCG
TCTCCTTTTTTCTGAGCGCCACATGCGCTTTCCGATTCCCGCGTAGAACC
AGTGCATTGCTCCGACATCGCACGTATGCAGCGACTTCCGCCTTCCATCC
CACTTCCACCAATGTCCATTTGCCAGCGAGCACCGCTATAGTGGGTGCAG
GTCCCACCGGTTTGTTCACTGCCTTGATGTTGGCGCGTCGTGGGTATCAA
AACATCACGGTATACGACAGGCTGCCACGCCCCGACGACCCGTCTTCACC
CACATGGGGTAACCCGTACCGGAGTTACAACCTGGGATTGGGGGCACGGG
GCCAAATTGCCTTGCGGGCGGCAGACGCTTGGGAGTCGATCGAACCCTTT
TGCGCCCAGGCGATTGGGAGAAAAGACTGGACGCCAGAGCAAGGGGAACG
ACCGGAGCAAATTTACACGGACAGGGAGTACAAGACACAAGTGATACAAA
GGGACCGGATTGCCAGCTGCCTCTTGGGGGAGCTGGAAAGGAAACACGGG
GACCAAGTCTCGGTCTGGCACAATGTGGAATGTGTGGGATTGACCTGGTT
GGACGAGGCAAATCCTGGGCCGGAGGCGAGCCCCTCCTCCGCAGAGATAG
GGGAAAAAGGCGTCCGCCTTCGCCTCCACCGGCAATGCGAGGGACAAGAG
CTGGAGCAATGGACAACAGAGGCACGCTGGGTGGTCGGGGCTGACGGGGT
CCGTTCTGCCTTGCGCAGTGCCCTGGAAGTGAAGACAGCCCCCGGGGGTC
ACCATGGACAGACACAAAAAGAACGCGTTCGTACCATCAAACTGCCCGAA
CGCAACGAATTTGTCTATAAAATCCTCCCACTGGATCTCAGGCCCAAATA
CGGCACGGGCCCCGGGTGGCGCCCGGATTTGAATTATTCGGCACGGAGCA
AAGGCGAGGTTACCATCGAAGCGCTGCCTACACGGGAAGGGATCTTCGTC
GGGGTAGTCCTCTTCCGACCAGATTCCTCCGCCATAGCCAAGATCCAAGG
CAAGGAAGACGCCAGGGAATTCTTCGCGGGCTCTTTCCCTCAGTTCCTCG
ACGTGATCCGGGAGGAGGATTTGGCACGCTTCGCGACCGGCCCGACCTTC
CGCCTCCCTAGTTTTTCGTATTGCGGTCCCAGCATTTTCTACCGGGACAA
CACTTTGCTCCTGGGAGATTGCATCCATTCCGTCAAGCCATACTTCGGCC
TGGGGCTGAACTCGGCCCTGGAGGACGTGATGGCCTTGGACAAGTGCCTG
TCCGAGTCTGAGGACGATGTCAGCAAGGCCCTTCCTCTCTTTTCCTCCCG
CACGGCCCCTCAAGCCAAGGCACTCGTTGAGTTTCAGGCTTCGTTCGACT
ACAACGCCAATACGTTGGAAGGATTTCTCCGTTTCGTCCTCCCGCTGATT
TTGGACGGGATTTTCCATCGGTATTTCCCGGCATTTTTCGCCCCGAACGG
GATTCGTCTACTCCAGGACCATCGCTCCACCTTCCGACAGACGCGCCGAC
GGAAGCAAAGAGATCGGATTGGCCAAGCTGTAATTCTCGGAGTTTTGCTG
ACGGGAATAGGCAAAGGCTTAGGCTGGGCAGTGAAGGTGGCAGCGCGGAT
CCTCTTGAAAGGGTAAATGCCACAGCTGCGCCTGAACTCTTCAAATTTCT
GCTGTACCTTCGTCGCGGTACTGTTCGTCTCCTTTTTTCTGAGCGCCACA
TGCGCTTTCCGATTCCCGCGTAGAACCAGTGCATTGCTCCGACATCGCAC
GTATGCAGCGACTTCCGCCTTCCATCCCACTTCCACCAATGTCCATTTGC
CAGCGAGCACCGCTATAGTGGGTGCAGGTCCCACCGGTTTGTTCACTGCC
TTGATGTTGGCGCGTCGTGGGTATCAAAACATCACGGTATACGACAGGCT
GCCACGCCCCGACGACCCGTCTTCACCCACATGGGGTAACCCGTACCGGA
GTTACAACCTGGGATTGGGGGCACGGGGCCAAATTGCCTTGCGGGCGGCA
GACGCTTGGGAGTCGATCGAACCCTTTTGCGCCCAGGCGATTGGGAGAAA
AGACTGGACGCCAGAGCAAGGGGAACGACCGGAGCAAATTTACACGGACA
GGGAGTACAAGACACAAGTGATACAAAGGGACCGGATTGCCAGCTGCCTC
TTGGGGGAGCTGGAAAGGAAACACGGGGACCAAGTCTCGGTCTGGCACAA
TGTGGAATGTGTGGGATTGACCTGGTTGGACGAGGCAAATCCTGGGCCGG
AGGCGAGCCCCTCCTCCGCAGAGATAGGGGAAAAAGGCGTCCGCCTTCGC
CTCCACCGGCAATGCGAGGGACAAGAGCTGGAGCAATGGACAACAGAGGC
ACGCTGGGTGGTCGGGGCTGACGGGGTCCGTTCTGCCTTGCGCAGTGCCC
TGGAAGTGAAGACAGCCCCCGGGGGTCACCATGGACAGACACAAAAAGAA
CGCGTTCGTACCATCAAACTGCCCGAACGCAACGAATTTGTCTATAAAAT
CCTCCCACTGGATCTCAGGCCCAAATACGGCACGGGCCCCGGGTGGCGCC
CGGATTTGAATTATTCGGCACGGAGCAAAGGCGAGGTTACCATCGAAGCG
CTGCCTACACGGGAAGGGATCTTCGTCGGGGTAGTCCTCTTCCGACCAGA
TTCCTCCGCCATAGCCAAGATCCAAGGCAAGGAAGACGCCAGGGAATTCT
TCGCGGGCTCTTTCCCTCAGTTCCTCGACGTGATCCGGGAGGAGGATTTG
GCACGCTTCGCGACCGGCCCGACCTTCCGCCTCCCTAGTTTTTCGTATTG
CGGTCCCAGCATTTTCTACCGGGACAACACTTTGCTCCTGGGAGATTGCA
TCCATTCCGTCAAGCCATACTTCGGCCTGGGGCTGAACTCGGCCCTGGAG
GACGTGATGGCCTTGGACAAGTGCCTGTCCGAGTCTGAGGACGATGTCAG
CAAG

Synonyms

Publications