rna6859, rna6859 (mRNA) Nannochloropsis gaditana

Overview
Namerna6859
Unique Namerna6859
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length789
Alignment locationCM002469.1:655582..656462 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100362g2.2185.mrna
Orig protein idgnl|cribi|Naga_100362g2.2185
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:655582..656462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100362g2gene6631Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6859rna6859-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23829.1cds6843Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6859 ID=rna6859|Name=rna6859|organism=Nannochloropsis gaditana|type=mRNA|length=789bp
ATGCCGCTCTTTACTGAATATCAAGGGTCCCGATCACGTAAGGTTGGTCG
ATTACTCAACTTTCTCCTAATTACGGCCAAAGGACCGAATGTGAGAAAGG
CATTCCCGGATAAATTTTATCATTTCGATGCTATGGAAATAACATTCAAA
ATCACTGAAGGGACAGCTGTGGCGTTGGCGGGGGTACAGGCTTTTCGTGT
GCGGGGGCTGCATCATCAGCTATCAGTGGAACAAAGACATTCGCCACTCG
GTATGCTGCGGCACGAGGTTAAAATCATCAGAGGAAGTCACGACAGAAAA
ATGACCAGCCGGTTGAGCAACAAAAGGAGAAGACGAGGGCCTTGTCCTCT
TGTCGTCATGGGTCTGCAGCTCCTGATTTGGTCCCTGCCGTCAACACCAG
CATTCATGACCTCGCACTGCCCACTGCCTGCCTCCCCGTCCCAGCTCTTC
TCAAAGAACGCGATGCGCCTCCTTCCACCTGAAATTAGTCAGCCACAGAT
GCTGTTGCACGCACCTTCCCGTCCCTCTATTCCCAAGCTGGTGTTGATGG
CCGCCTCTGCCCCTTCGCTGGCCCCTCAGACGCCGCAGTCCCAGCTTGCA
GGATCAGAGCCCGTGTCGCCGCCGGCTAAAGCCTCCTCACCACCACGACT
AGCCCTCCCTCGTGGAGGAGGAAGTGGAGCCGTTCTACGCCCTGGCACAG
CGATGTCGGCAAAGCGATCTACCCGATATGGTCCTGGAGGTGCTCAATTC
CTACCGTGCCATGGCCTCGCCGGGGGGCCTTATTCATAG
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protein sequence of rna6859

>rna6859-protein ID=rna6859-protein|Name=rna6859|organism=Nannochloropsis gaditana|type=polypeptide|length=204bp
MTTNAYSRLLVLTFCTLWITLARAQDLEGICLGFNRTFGGLQNYRSLCHA
CFDQGCGVCAPPAKHKHYIGAASCVKDASFCSTAYTKAGDDGAHQVCNVT
IIPFAAVIAVLVLCVLCCAGCLGYCGLSLRRYWVVRQVLEAKRKEQGYGE
GEEEKEETKEGFRESNAHRAGGEHKSIFNSNVVSHLSLSMPAQLSAEKVM
QRNV
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mRNA from alignment at CM002469.1:655582..656462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6859 ID=rna6859|Name=rna6859|organism=Nannochloropsis gaditana|type=mRNA|length=881bp|location=Sequence derived from alignment at CM002469.1:655582..656462- (Nannochloropsis gaditana)
ATGACAACAAATGCATATTCAAGACTTTTGGTGCTGACCTTCTGCACTCT
ATGGATTACATTGGCGCGTGCACAAGATCTGGAAGGCATCTGTTTGGGTT
TCAACAGAACATTTGTACGTCTCATTCTGGTTTCCGCCATGTGTCTTCTC
TTTCACCTGATCCATGCAAGTCTCCCATATAAGACTCATGCATGATGTAC
TTGACCTCTGAATTGATGAAAACCTTGCATTCTTGACGTTTACTTAATCA
TCTACATTGAGCTCGATGAATTTACTCACGTGATCTGCCTCGAACTCTAA
TGGGAGATCTCTCCTACCACGTTCCATCTTCTTCAATTCCCCAATTACCT
TCTGTTTCTTCTTACCGCCCTATACAACAGGGTGGATTGCAGAATTATAG
AAGCTTGTGTCATGCCTGTTTTGATCAGGGTTGCGGTGTCTGTGCCCCGC
CTGCAAAACACAAGCATTACATTGGGGCGGCTTCCTGTGTGAAGGACGCA
AGTTTTTGCTCCACCGCGTACACAAAGGCGGGAGATGACGGGGCCCACCA
GGTATGTAATGTCACGATTATCCCATTTGCAGCAGTCATTGCTGTGTTAG
TCTTGTGCGTTTTGTGCTGTGCTGGGTGTTTGGGGTATTGCGGCCTGAGT
CTGCGGAGGTATTGGGTTGTACGGCAAGTCCTCGAAGCGAAGCGAAAAGA
GCAGGGGTATGGTGAGGGAGAAGAAGAAAAAGAAGAGACGAAAGAAGGAT
TTCGGGAAAGTAATGCTCATCGGGCTGGAGGCGAACACAAGTCAATTTTC
AACTCAAATGTTGTGTCGCATTTATCGCTCTCGATGCCCGCTCAGTTGTC
GGCAGAGAAAGTAATGCAACGCAACGTGTAA
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Coding sequence (CDS) from alignment at CM002469.1:655582..656462-

>rna6859 ID=rna6859|Name=rna6859|organism=Nannochloropsis gaditana|type=CDS|length=1230bp|location=Sequence derived from alignment at CM002469.1:655582..656462- (Nannochloropsis gaditana)
GGTGGATTGCAGAATTATAGAAGCTTGTGTCATGCCTGTTTTGATCAGGG
TTGCGGTGTCTGTGCCCCGCCTGCAAAACACAAGCATTACATTGGGGCGG
CTTCCTGTGTGAAGGACGCAAGTTTTTGCTCCACCGCGTACACAAAGGCG
GGAGATGACGGGGCCCACCAGGTATGTAATGTCACGATTATCCCATTTGC
AGCAGTCATTGCTGTGTTAGTCTTGTGCGTTTTGTGCTGTGCTGGGTGTT
TGGGGTATTGCGGCCTGAGTCTGCGGAGGTATTGGGTTGTACGGCAAGTC
CTCGAAGCGAAGCGAAAAGAGCAGGGGTATGGTGAGGGAGAAGAAGAAAA
AGAAGAGACGAAAGAAGGATTTCGGGAAAGTAATGCTCATCGGGCTGGAG
GCGAACACAAGTCAATTTTCAACTCAAATGTTGTGTCGCATTTATCGCTC
TCGATGCCCGCTCAGTTGTCGGCAGAGAAAGTAATGCAACGCAACGTGTA
AATGACAACAAATGCATATTCAAGACTTTTGGTGCTGACCTTCTGCACTC
TATGGATTACATTGGCGCGTGCACAAGATCTGGAAGGCATCTGTTTGGGT
TTCAACAGAACATTTGGTGGATTGCAGAATTATAGAAGCTTGTGTCATGC
CTGTTTTGATCAGGGTTGCGGTGTCTGTGCCCCGCCTGCAAAACACAAGC
ATTACATTGGGGCGGCTTCCTGTGTGAAGGACGCAAGTTTTTGCTCCACC
GCGTACACAAAGGCGGGAGATGACGGGGCCCACCAGGTATGTAATGTCAC
GATTATCCCATTTGCAGCAGTCATTGCTGTGTTAGTCTTGTGCGTTTTGT
GCTGTGCTGGGTGTTTGGGGTATTGCGGCCTGAGTCTGCGGAGGTATTGG
GTTGTACGGCAAGTCCTCGAAGCGAAGCGAAAAGAGCAGGGGTATGGTGA
GGGAGAAGAAGAAAAAGAAGAGACGAAAGAAGGATTTCGGGAAAGTAATG
CTCATCGGGCTGGAGGCGAACACAAGTCAATTTTCAACTCAAATGTTGTG
TCGCATTTATCGCTCTCGATGCCCGCTCAGTTGTCGGCAGAGAAAGTAAT
GCAACGCAACGTGTAAATGACAACAAATGCATATTCAAGACTTTTGGTGC
TGACCTTCTGCACTCTATGGATTACATTGGCGCGTGCACAAGATCTGGAA
GGCATCTGTTTGGGTTTCAACAGAACATTT
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Synonyms
Publications