rna685, rna685 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna685
Unique Name	rna685
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1081
Alignment location	CM002456.1:159927..162305 -

Link to JBrowse

Properties


Property Name	Value
Product	diphthamide biosynthesis protein 1
Orig transcript id	gnl\|cribi\|Naga_100276g5.9394.mrna
Orig protein id	gnl\|cribi\|Naga_100276g5.9394
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:159927..162305 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100276g5	gene658	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna685	rna685-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29993.1	cds685	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:159927..162305-
coding sequence from alignment at CM002456.1:159927..162305-

mRNA sequence

>rna685 ID=rna685|Name=rna685|organism=Nannochloropsis gaditana|type=mRNA|length=1081bp
AAACGACCTCACTTTCTTTAAAATTTCTCCCGGCATGTGCTGCAGTTTAG
TGCTCGTCCCTTGCTTGAGTACTATGTGGTTTGTTGTTCGATGCGACGCG
TGATTACCTCCTCTTACTTGCCAGTCCTTGACGGAACTTTGCTGATTCCT
ATCTGTAACACTCAAGAGGTAGAAATAGAAGCACCTGTGTCGAACGACTA
GAAACGTCCTTACATTTACGCTAACCATTACGGCAGGACATCATCTTTGG
CTCCTGGACGAGAAGGCTGGAGGAGGGCGCAAACAAGATTTAGACGATGC
CTACACATCTGCGAGAGTTCGGTCTTCTTGTCTGCATGACAGCCATGTCA
ACAGTACCTGTACTCTCCACAGGCATGTCCAGCACAGTCCTTGTTGGAGA
CTCGATCATGGCAGGCCGTGATGGTGTGTGGGGTATTGGAGCGATTAACA
AATACTTGAACCAATTCTCGGGCCAAAAACTTGACAATTACGCTCTCATC
GGCTCAAGCCTACACGACGGATGGGTAAAAAGCGTACCGCAGGTTTATGG
CGATATGCGAAAGAAAACGGCACCAGCAGTGCCCACTACAATTGTTCTGA
ATGGCGGAGGAAATGACGTTATCACCGTGCGAGATGATTGCTGGGCATTC
AACGACAAATGCCGTAAGCAGATAGATGAAGCCATGGACATTGCTGAAAA
GCTTTTGCTTTGCATGCATGATGACGGCGTCGAGCACGTTATCTATCTCG
GCTTTTATTACGCTTTTAACATGACCGAAGCAGTAGATTATGGGATGGAG
GGAATCAAACGGGTTTGTGAGGGCGCTCCCATAGACTGCCATGTGGCTGA
TGCTCGCAATCTAAGCATACCTACTGGGTGGGATGGTATACATCCCCTTG
ACGAAGGTTACAAACGGTTGAGCACCCGCATTTGGGAAGTAAAGGAGGCG
AATAATATACCAATCTAGAGCGGTACTCATAAGTCTGTAATAGCAAGAGG
ATTCCTGACCCTTACTCATATAAATATAACAAGGAAACCCGTAAATAACC
GCATAAAGAATATTGTATTTAACCGTTGCTG

protein sequence of rna685

>rna685-protein ID=rna685-protein|Name=rna685|organism=Nannochloropsis gaditana|type=polypeptide|length=420bp
MDEAPLPTRTPATSTSQPTSGELVPSSSSGPAPRRPLKRFVSKVKRIPDD
ILEDPALAQAIAQLPSNYNFEVHKTIWRLREAGATCVALQFPEGLLMYAC
TLADIMERYVPSVEEVVVMGDVTYGACCIDDLGAKAAGADFLVHYGHSCL
VPVTCTALKALYVFVEISVDAAHLIDSLRRNLEAPRRVCLMGTIQFISAV
HESAKALSDHFASVSVPQARPLSAGEVLGCTSPTLDAAKFDTLIFVADGR
FHLEAAMIANPSLEAYRYDPYDKTLTREIYDTPKMLRLRKQAVAAGKVAK
RWGVILGTLGRQGNPALVKHAMDLLERSGREAFILLLSEITPQKLELLHE
EVDAWVQVACPRLSIDWGHFFPNPVLTAYELEVALGGQAWSEASYPMDYY
AKDGGAWGNFNPANAKRQML

mRNA from alignment at CM002456.1:159927..162305-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna685 ID=rna685|Name=rna685|organism=Nannochloropsis gaditana|type=mRNA|length=2379bp|location=Sequence derived from alignment at CM002456.1:159927..162305- (Nannochloropsis gaditana)
CCTCGTCCTCATACCCATGGCCCAACTACTTGACGGAAATCATTCGCAAT
ACTGCCGTGTGTTGTATCATGATAACTGAATGCATTTTTTTAAACCTGTG
TAGCTTCTCGGTTGGAAAGTCGGATACGTCCGACGTCCTCCAGGTCAACC
CCTCTGCATTAGCGTCTCCAAGCAGGTCTAGCCCTTTAACAAAGTCATTC
ATGGATGATAAGAGGTCTCATAATTTTTTTAGAAGGCATCCTTATTACAT
GTCAGCGTATGTGGTTTGCTTTTCTCTTTCTGGATGGAGAGCGGGATCTG
CTCGATGTACGCACACATGTAGCACAGGCGTGGTCCCAGCACGATGCATG
TTTCTATAGCTAGAAGGGGAAAGAAAATCATAGGGATTACCTGGACTGGA
GTTCTGATAAAGTCTCATACAGATCTCTTTCACTTTACTTTTTGCAAATT
ATGCTGCAGAAAATATCAAGGGGTGGCCGGCAGTGTCAGGATACTTTTGT
TAAGGCCTTATTCGCCCTCATCGGGAAGAGCTAATCGCGTTTGATAGCAC
GAAAGGGGCAAGCTTTTTCAGCTTTATCTCTTCCATACGTCAAGATAGCC
GCACCTGTTGACAAAATGGATGAGGCACCTTTGCCTACAAGGACACCAGC
CACCTCAACATCACAGCCGACGTCCGGGGAACTCGTCCCTAGCTCTTCTT
CGGGCCCCGCCCCCCGACGACCTTTGAAGGTGATTCTTCCCTCCAACTCC
AAGAATGCATTTCCTGGCTTAAATCAACATCGTAGAGTGTAAACGCAGTG
TTTGCTGTCGACATCGGATACACAAACGGTGAAGATTAATTTGTAGAAGT
GAACGTGCCTCGAAGTCAATCCTCTCCACCCGCGGGGGTATCATCAATGA
AGCATGCTTACAGCCTTCCCAAACCAATTAAGAATCGAAGTGACTTAGTA
TACACATATATCTTATACCTTCGCACTCCCACTTTAACATTCTTTGCCCT
CAGCGCTTTGTCAGCAAGGTCAAACGCATTCCTGACGATATCCTTGAAGA
CCCCGCCTTGGCTCAAGCCATCGCACAGCTGCCGTCCAACTACAATTTTG
AGGTGCACAAGACGATATGGCGGCTCCGAGAAGCGGGAGCCACATGCGTG
GCGCTCCAGTTTCCCGAGGGACTCTTGATGTACGCCTGCACGCTGGCCGA
CATCATGGAGCGCTACGTCCCTTCGGTGGAGGAGGTGGTGGTGATGGGTG
ACGTCACCTACGGCGCGTGCTGTATCGATGACCTGGGGGCGAAGGCGGCA
GGAGCGGATTTCTTGGTTCACTACGGACACAGCTGTCTGGTGCCGGTCAC
CTGCACCGCGCTCAAGGCGCTCTATGTCTTCGTCGAGATCAGCGTCGACG
CCGCCCATTTGATCGACAGCCTCCGTCGGAACCTGGAAGCGCCTCGGAGG
GTCTGTCTGATGGGAACGATTCAATTCATCTCCGCTGTGCACGAGTCGGC
CAAAGCGCTGTCAGATCACTTTGCCTCCGTCTCCGTCCCTCAGGCGCGGC
CTCTCTCAGCGGGAGAGGTACTGGGATGCACATCCCCTACGCTGGACGCC
GCAAAGTTCGATACATTGATCTTTGTTGCCGACGGGCGCTTCCACTTGGA
AGCAGCGATGATTGCGAACCCATCCTTAGAAGCCTACCGATATGACCCCT
ACGATAAAACTTTGACCCGAGAAATCTACGACACCCCGAAAATGCTTCGC
CTTCGCAAACAAGCCGTGGCCGCTGGGAAGGTGGCCAAACGCTGGGGTGT
CATCTTGGGTACATTAGGAAGGCAGGGAAATCCTGCATTGGTAAAACATG
CGATGGACCTACTGGAAAGGTCAGGGAGAGAGGCATTTATCTTGCTTTTA
TCGGAAATTACGCCTCAGAAGTTGGAGCTTTTACATGAAGAGGTAGACGC
CTGGGTGCAGGTGGCTTGTCCCCGGCTGTCGATTGATTGGGGGCATTTCT
TTCCGAATCCTGTACTGACAGCCTACGAGCTTGAAGTCGCTTTGGGAGGG
CAGGCCTGGTCCGAGGCGAGCTACCCGATGGACTATTATGCTAAAGACGG
TGGAGCGTGGGGCAATTTTAACCCAGCTAATGCGAAACGGCAAATGTTGT
AAAATCATATATTGACATCGCTTTTGGAATACTTGGATGTACCTTTATCT
GTCGGACTTTCTTCCATGGAACCATTTCTTTGTCGGGGTTTGGGCCTTTG
CTTGGATAGATGACCGAACACCAGGAAGCGGAGTAAAGTAGTCGCATAAA
TATGGGCACCACTGGAAAATCTAAAATGAATTATACATTACAATGCAAAA
GGGAAAAGAGACGCTGTATGTCCCCCAAA

Coding sequence (CDS) from alignment at CM002456.1:159927..162305-

>rna685 ID=rna685|Name=rna685|organism=Nannochloropsis gaditana|type=CDS|length=2526bp|location=Sequence derived from alignment at CM002456.1:159927..162305- (Nannochloropsis gaditana)
CGCTTTGTCAGCAAGGTCAAACGCATTCCTGACGATATCCTTGAAGACCC
CGCCTTGGCTCAAGCCATCGCACAGCTGCCGTCCAACTACAATTTTGAGG
TGCACAAGACGATATGGCGGCTCCGAGAAGCGGGAGCCACATGCGTGGCG
CTCCAGTTTCCCGAGGGACTCTTGATGTACGCCTGCACGCTGGCCGACAT
CATGGAGCGCTACGTCCCTTCGGTGGAGGAGGTGGTGGTGATGGGTGACG
TCACCTACGGCGCGTGCTGTATCGATGACCTGGGGGCGAAGGCGGCAGGA
GCGGATTTCTTGGTTCACTACGGACACAGCTGTCTGGTGCCGGTCACCTG
CACCGCGCTCAAGGCGCTCTATGTCTTCGTCGAGATCAGCGTCGACGCCG
CCCATTTGATCGACAGCCTCCGTCGGAACCTGGAAGCGCCTCGGAGGGTC
TGTCTGATGGGAACGATTCAATTCATCTCCGCTGTGCACGAGTCGGCCAA
AGCGCTGTCAGATCACTTTGCCTCCGTCTCCGTCCCTCAGGCGCGGCCTC
TCTCAGCGGGAGAGGTACTGGGATGCACATCCCCTACGCTGGACGCCGCA
AAGTTCGATACATTGATCTTTGTTGCCGACGGGCGCTTCCACTTGGAAGC
AGCGATGATTGCGAACCCATCCTTAGAAGCCTACCGATATGACCCCTACG
ATAAAACTTTGACCCGAGAAATCTACGACACCCCGAAAATGCTTCGCCTT
CGCAAACAAGCCGTGGCCGCTGGGAAGGTGGCCAAACGCTGGGGTGTCAT
CTTGGGTACATTAGGAAGGCAGGGAAATCCTGCATTGGTAAAACATGCGA
TGGACCTACTGGAAAGGTCAGGGAGAGAGGCATTTATCTTGCTTTTATCG
GAAATTACGCCTCAGAAGTTGGAGCTTTTACATGAAGAGGTAGACGCCTG
GGTGCAGGTGGCTTGTCCCCGGCTGTCGATTGATTGGGGGCATTTCTTTC
CGAATCCTGTACTGACAGCCTACGAGCTTGAAGTCGCTTTGGGAGGGCAG
GCCTGGTCCGAGGCGAGCTACCCGATGGACTATTATGCTAAAGACGGTGG
AGCGTGGGGCAATTTTAACCCAGCTAATGCGAAACGGCAAATGTTGTAAA
TGGATGAGGCACCTTTGCCTACAAGGACACCAGCCACCTCAACATCACAG
CCGACGTCCGGGGAACTCGTCCCTAGCTCTTCTTCGGGCCCCGCCCCCCG
ACGACCTTTGAAGCGCTTTGTCAGCAAGGTCAAACGCATTCCTGACGATA
TCCTTGAAGACCCCGCCTTGGCTCAAGCCATCGCACAGCTGCCGTCCAAC
TACAATTTTGAGGTGCACAAGACGATATGGCGGCTCCGAGAAGCGGGAGC
CACATGCGTGGCGCTCCAGTTTCCCGAGGGACTCTTGATGTACGCCTGCA
CGCTGGCCGACATCATGGAGCGCTACGTCCCTTCGGTGGAGGAGGTGGTG
GTGATGGGTGACGTCACCTACGGCGCGTGCTGTATCGATGACCTGGGGGC
GAAGGCGGCAGGAGCGGATTTCTTGGTTCACTACGGACACAGCTGTCTGG
TGCCGGTCACCTGCACCGCGCTCAAGGCGCTCTATGTCTTCGTCGAGATC
AGCGTCGACGCCGCCCATTTGATCGACAGCCTCCGTCGGAACCTGGAAGC
GCCTCGGAGGGTCTGTCTGATGGGAACGATTCAATTCATCTCCGCTGTGC
ACGAGTCGGCCAAAGCGCTGTCAGATCACTTTGCCTCCGTCTCCGTCCCT
CAGGCGCGGCCTCTCTCAGCGGGAGAGGTACTGGGATGCACATCCCCTAC
GCTGGACGCCGCAAAGTTCGATACATTGATCTTTGTTGCCGACGGGCGCT
TCCACTTGGAAGCAGCGATGATTGCGAACCCATCCTTAGAAGCCTACCGA
TATGACCCCTACGATAAAACTTTGACCCGAGAAATCTACGACACCCCGAA
AATGCTTCGCCTTCGCAAACAAGCCGTGGCCGCTGGGAAGGTGGCCAAAC
GCTGGGGTGTCATCTTGGGTACATTAGGAAGGCAGGGAAATCCTGCATTG
GTAAAACATGCGATGGACCTACTGGAAAGGTCAGGGAGAGAGGCATTTAT
CTTGCTTTTATCGGAAATTACGCCTCAGAAGTTGGAGCTTTTACATGAAG
AGGTAGACGCCTGGGTGCAGGTGGCTTGTCCCCGGCTGTCGATTGATTGG
GGGCATTTCTTTCCGAATCCTGTACTGACAGCCTACGAGCTTGAAGTCGC
TTTGGGAGGGCAGGCCTGGTCCGAGGCGAGCTACCCGATGGACTATTATG
CTAAAGACGGTGGAGCGTGGGGCAATTTTAACCCAGCTAATGCGAAACGG
CAAATGTTGTAAATGGATGAGGCACCTTTGCCTACAAGGACACCAGCCAC
CTCAACATCACAGCCGACGTCCGGGGAACTCGTCCCTAGCTCTTCTTCGG
GCCCCGCCCCCCGACGACCTTTGAAG

Synonyms

Publications