|
|
Properties
| Property Name | Value |
|---|
| Product | delta 5 fatty acid desaturase |
| Orig transcript id | gnl|cribi|Naga_100273g7.3657.mrna |
| Orig protein id | gnl|cribi|Naga_100273g7.3657 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:628682..631568 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6846 ID=rna6846|Name=rna6846|organism=Nannochloropsis gaditana|type=mRNA|length=899bp
ACAAACCAAGAAGCACCGGGCAACTGCAACATGACGTACTCTTTCTGACA
CGAAATTCTTCCATTGATACTCTTCCTCCCTTTACATTCAGGACGTCGTA
TTACACCATGGAAATGCTTCGATTGGTCTCGCTTTGCGCCATTGTCTCCA
CTGCCTTGTCCTTCGTCGCCACCGGCCCGCCCTCCCGTCACACCACGGCA
GCACCGACGGCTCGCCCAACATTCGCAGCATGGGGCACGCGTGTGGTGCC
CAGCCGTAGCATGAGTCTGCATGGAAGCCGGGGACTATGCATGGCGATGG
AACGCACCTATATCATGGCGAAACCGGACGCAGTCCAACGTGGACTCGTG
TCTGATATCATTGGGCGTTTCGAGAAAAAGGGGTACAAACTGGTCGCGTT
GAAGCTTGTCAAACCCGCCCGGTCCCTCTTGGAGGAGCACTACGACTCGT
TGAAGGACAAGGCCTTCTTCCCGAGCCTGATGGACTACATGACGAGCGGC
CCAGTGGTGGCGATGGTCTGGGAGGGGAAAAACGTGGTGGCCACGGGCAG
GACGATGCTGGGCGCCACGAACCCGTTGGAGAGTGCCCCTGGCACGATCC
GGGGGGACTTCTCGATCGAGGTGGGCCGGAACATATGCCACGGTTCAGAC
TCGGTGGAGAACGCAGAGCGGGAGATAAAGTTGTGGTTTGGGGAGGGAAC
CATTGATTGGTCGAGCCACAGCCAGGGCTGGATTTATGAGTAGAACTGTC
GAGATGATAAAGGACGGCGAGGGAGGAACAGAGGGCACGAGGGTGTGTTT
GCGAAAGCCCAGCCTACACTTTTTCTTGGCCTCCGAAGGCTGTGGCAGGG
TTGCGACATCCGAGCGAACAAAGAAAGAGCGAAACGGAATCCAAACGAC back to topprotein sequence of rna6846 >rna6846-protein ID=rna6846-protein|Name=rna6846|organism=Nannochloropsis gaditana|type=polypeptide|length=515bp
MPPQNDAALGSGLFRNRFGRKSSASSLLVNDGSMGSTEPVLSTAAVPATE
PAGKSYTWQEVAEHNTEKSLWVTVRGKVYDISSWVDNHPGGKEILLLAAG
RDITYAFDSYHPFTEKPTQVLNKFEIGRVTSYEFPQYKADTRGFYKALCT
RVNDYFVAHKLNPKDPIPGIWRMCLVALVALASFVVCNGYVGVEGTWAGT
TWARLVAAVVFGICQALPLLHVMHDSSHLAFGNTERWWQVGGRLAMDFFA
GANMTSWHNQHVIGHHIYTNVFLADPDLPDKAAGDPRRLVQKQAWQAMYK
WQHLYLPPLYGILGIKFRVQDIMETFGSGTNGPVRVNPLSFFQWAEMIFT
KMFWAGWRIAFPLLSPSFHTGWAAFSALFLVSEFMTGYFLAFNFQVSHVS
SECDYPLGEAPREGEDGNIVDEWAVSQIKSSVDYAHNNPVTTFLCGALNY
QVTHHLFPTVSQYHYPAIAPIIQDVCREFNVDYKVLPDFVTAFHAHIAHL
KTLGERGEAAEVHMG back to topmRNA from alignment at CM002469.1:628682..631568- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6846 ID=rna6846|Name=rna6846|organism=Nannochloropsis gaditana|type=mRNA|length=2887bp|location=Sequence derived from alignment at CM002469.1:628682..631568- (Nannochloropsis gaditana)
TTCCCGTGCCCGTCCATCCCTCGGGGCCCACCTGCTTCCCTCCTATCCCT
CCATTGTACACGCACACAGGGGAAAAGCACAGCGAAGGATGCCTCCGCAG
AACGACGCTGCCCTCGGAAGTGGTGAGTGCATAGTGGGGAGCAGAGAGGG
GGTATTCGGATTAAGGGATCGATGAGTCATACAAGCCCAGGATGGAGGGA
ATGTTAGTCTGGACCAGCCAAGCCTATTTACTGGCAGCGCGTTGACATTC
CCCTAGCATCCTACATTGCGAGCGGCTCGAGAATGTGTAGTATGTGGCGT
CTGTCTGTATGGTGATGTTCTGCCTGCTTCCTCTCTATCGGAAAAGTGCG
AGCATCTAATAGATTCGTCCATACAGGGCGCTCCCGTCCCTGCGCCCCCT
TTGCATGCTTACGTCCATTGGCCACCTTCCCACCCCGGAATGATGTGTCC
AAGAAGTGTTTGCCTCATGGAAGACACGCAAGGGCTCAGGGGAGCGCGAA
TCGTGGGCATGTCCTGAGCGCCTGCCACTGATTCGGCCCTCGCCTGCCCT
CCCTCCCCCCTTCCCTCCTCCCCTTCCTCACTTCTTCTTCCCCCCCTGCT
TTCTTTCCTCTCAAGGTCTCTTTCGGAACCGCTTCGGTCGCAAAAGCTCC
GCTTCTTCCCTTCTTGTCAATGACGGCAGTATGGGAAGCACCGAGCCTGT
CCTTTCCACGGCGGCCGTACCGGCAACGGAGCCGGCGGGGAAATCCTACA
CATGGCAAGAAGTAGCCGAGCACAACACAGAGAAAAGTTTGTGGGTCACT
GTGCGAGGGAAGGTGTACGACATATCCAGTTGGGTGGACAACCATCCGGG
GGGCAAGGAGATCCTGCTGTTGGCGGCGGGGAGGGACATCACGTACGCCT
TCGATTCCTACCACCCGTTCACGGAGAAACCGACGCAGGTGCGAGAAAAG
AGAGGGAATAAGGGAGAGAGAGGGGAGGGGAGAGGGGAGTGATGCAGCGC
GAGCGCCAATTGGTGTCCTGCGGGGAGGGATCAAGCCGCAGATCCCCCGG
GACGGCTCGCAACGCATCACCCTCGCTTTGCGCACCCATCCGTCTTACCT
CCTGCCCCTCCTTCCCTTCCTCCGCCCCTCCTTTCCTCCCTTCGCCCAGG
TGCTCAACAAGTTTGAGATCGGCCGGGTCACCTCCTACGAATTCCCCCAG
TACAAGGCGGACACTCGTGGTTTCTACAAGGCCCTGTGCACCCGCGTGAA
TGACTACTTTGTGGCCCACAAGCTCAACCCTAAGGACCCAATCCCCGGCA
TCTGGCGCATGTGCCTCGTCGCCCTGGTGGCCTTGGCCTCTTTCGTGGTC
TGCAACGGCTACGTGGGTGTGGAAGGGACATGGGCCGGGACTACGTGGGC
CCGGCTAGTGGCGGCGGTGGTGTTTGGGATCTGTCAGGCCCTTCCTTTGT
TGCACGTCATGCACGACTCCTCCCACCTGGCGTTTGGCAATACAGAACGC
TGGTGGCAGGTGGGGGGGCGGCTGGCGATGGATTTCTTCGCCGGGGCGAA
CATGACCAGCTGGCACAACCAACACGTGATCGGCCACCATATCTACACGA
ATGTCTTCCTCGCCGACCCGGATTTACCCGACAAAGCCGCGGGAGATCCG
AGAAGATTGGTGCAGAAACAGGCGTGGCAAGCCATGTATAAATGGCAGCA
CTTGTACCTTCCCCCTCTGTACGGCATCCTGGGGATCAAATTTCGAGTCC
AAGATATCATGGAGACCTTCGGAAGTGGCACGAACGGGCCCGTACGGGTG
AACCCCTTGTCCTTTTTCCAATGGGCCGAGATGATTTTCACCAAAATGTT
TTGGGCAGGATGGAGGATCGCGTTCCCCTTGCTCTCCCCGTCTTTCCACA
CCGGCTGGGCTGCTTTTTCCGCCCTCTTCCTGGTCAGCGAGTTTATGACC
GGGTACTTCCTCGCCTTTAATTTCCAAGTCTCCCACGTCTCCTCCGAATG
CGACTACCCCTTGGGCGAAGCCCCCCGAGAGGGAGAGGATGGCAACATCG
TGGACGAATGGGCGGTCTCCCAAATAAAGAGCAGTGTGGACTATGCGCAC
AACAACCCAGTAACCACCTTCCTCTGCGGCGCCCTGAACTACCAAGTCAC
TCACCATCTGTTCCCCACTGTGAGTCAATACCACTACCCAGCCATCGCGC
CCATCATCCAAGACGTGTGTCGGGAGTTCAATGTGGATTACAAGGTTCTG
CCGGATTTTGTGACGGCTTTCCACGCCCACATAGCGCATCTGAAGACGTT
GGGGGAGCGGGGGGAGGCAGCAGAAGTTCACATGGGCTAATGTGGGATGC
ATGTGGAGGATGAGAGACGTCCAGTCGTGGAGTCCTTACAAGGCTACGGA
AGGAATATATTGTGATCTTGAGAAAATCAAAATCAAACCAGCTCTAGGAT
GATCAGGCGGTTGTATGACACAAGGTGAATTTCGGGAGGCTAAGAAGGAG
TCGGTATGAGAACTTGAGGACGAGATGTCTCTTATAAGGCATTTAAAGGA
ATTGATTTTTTAATAGGGTGTCAAGTTGTACTAGTTTTGCAGATATGTAG
GAAGATGGTTTTGACTATCATACAAATAATGAAACACAGCACAGCATGAC
GGAAATCCTTATTTGTGGTGTTGATTAATCTGCCCGTCGGTTCTATATCT
GCGCTTGAACTCGTATACATCATGTTTCGTCTTGGTACATGGGGTATTGT
ATCATGCTCCTTTTTTTTAGCGCGGTATTGCGCAACACAAGTAAATGATG
AAGTCTCACAATCATATCAGTACGGGCTATGACACTTTGGTAGTACTCAC
AGACGCCCCTACCCATTGGGTCGAGTCCTTCCCCACC back to topCoding sequence (CDS) from alignment at CM002469.1:628682..631568- >rna6846 ID=rna6846|Name=rna6846|organism=Nannochloropsis gaditana|type=CDS|length=4644bp|location=Sequence derived from alignment at CM002469.1:628682..631568- (Nannochloropsis gaditana)
GTGCTCAACAAGTTTGAGATCGGCCGGGTCACCTCCTACGAATTCCCCCA
GTACAAGGCGGACACTCGTGGTTTCTACAAGGCCCTGTGCACCCGCGTGA
ATGACTACTTTGTGGCCCACAAGCTCAACCCTAAGGACCCAATCCCCGGC
ATCTGGCGCATGTGCCTCGTCGCCCTGGTGGCCTTGGCCTCTTTCGTGGT
CTGCAACGGCTACGTGGGTGTGGAAGGGACATGGGCCGGGACTACGTGGG
CCCGGCTAGTGGCGGCGGTGGTGTTTGGGATCTGTCAGGCCCTTCCTTTG
TTGCACGTCATGCACGACTCCTCCCACCTGGCGTTTGGCAATACAGAACG
CTGGTGGCAGGTGGGGGGGCGGCTGGCGATGGATTTCTTCGCCGGGGCGA
ACATGACCAGCTGGCACAACCAACACGTGATCGGCCACCATATCTACACG
AATGTCTTCCTCGCCGACCCGGATTTACCCGACAAAGCCGCGGGAGATCC
GAGAAGATTGGTGCAGAAACAGGCGTGGCAAGCCATGTATAAATGGCAGC
ACTTGTACCTTCCCCCTCTGTACGGCATCCTGGGGATCAAATTTCGAGTC
CAAGATATCATGGAGACCTTCGGAAGTGGCACGAACGGGCCCGTACGGGT
GAACCCCTTGTCCTTTTTCCAATGGGCCGAGATGATTTTCACCAAAATGT
TTTGGGCAGGATGGAGGATCGCGTTCCCCTTGCTCTCCCCGTCTTTCCAC
ACCGGCTGGGCTGCTTTTTCCGCCCTCTTCCTGGTCAGCGAGTTTATGAC
CGGGTACTTCCTCGCCTTTAATTTCCAAGTCTCCCACGTCTCCTCCGAAT
GCGACTACCCCTTGGGCGAAGCCCCCCGAGAGGGAGAGGATGGCAACATC
GTGGACGAATGGGCGGTCTCCCAAATAAAGAGCAGTGTGGACTATGCGCA
CAACAACCCAGTAACCACCTTCCTCTGCGGCGCCCTGAACTACCAAGTCA
CTCACCATCTGTTCCCCACTGTGAGTCAATACCACTACCCAGCCATCGCG
CCCATCATCCAAGACGTGTGTCGGGAGTTCAATGTGGATTACAAGGTTCT
GCCGGATTTTGTGACGGCTTTCCACGCCCACATAGCGCATCTGAAGACGT
TGGGGGAGCGGGGGGAGGCAGCAGAAGTTCACATGGGCTAAGTCTCTTTC
GGAACCGCTTCGGTCGCAAAAGCTCCGCTTCTTCCCTTCTTGTCAATGAC
GGCAGTATGGGAAGCACCGAGCCTGTCCTTTCCACGGCGGCCGTACCGGC
AACGGAGCCGGCGGGGAAATCCTACACATGGCAAGAAGTAGCCGAGCACA
ACACAGAGAAAAGTTTGTGGGTCACTGTGCGAGGGAAGGTGTACGACATA
TCCAGTTGGGTGGACAACCATCCGGGGGGCAAGGAGATCCTGCTGTTGGC
GGCGGGGAGGGACATCACGTACGCCTTCGATTCCTACCACCCGTTCACGG
AGAAACCGACGCAGATGCCTCCGCAGAACGACGCTGCCCTCGGAAGTGGT
GCTCAACAAGTTTGAGATCGGCCGGGTCACCTCCTACGAATTCCCCCAGT
ACAAGGCGGACACTCGTGGTTTCTACAAGGCCCTGTGCACCCGCGTGAAT
GACTACTTTGTGGCCCACAAGCTCAACCCTAAGGACCCAATCCCCGGCAT
CTGGCGCATGTGCCTCGTCGCCCTGGTGGCCTTGGCCTCTTTCGTGGTCT
GCAACGGCTACGTGGGTGTGGAAGGGACATGGGCCGGGACTACGTGGGCC
CGGCTAGTGGCGGCGGTGGTGTTTGGGATCTGTCAGGCCCTTCCTTTGTT
GCACGTCATGCACGACTCCTCCCACCTGGCGTTTGGCAATACAGAACGCT
GGTGGCAGGTGGGGGGGCGGCTGGCGATGGATTTCTTCGCCGGGGCGAAC
ATGACCAGCTGGCACAACCAACACGTGATCGGCCACCATATCTACACGAA
TGTCTTCCTCGCCGACCCGGATTTACCCGACAAAGCCGCGGGAGATCCGA
GAAGATTGGTGCAGAAACAGGCGTGGCAAGCCATGTATAAATGGCAGCAC
TTGTACCTTCCCCCTCTGTACGGCATCCTGGGGATCAAATTTCGAGTCCA
AGATATCATGGAGACCTTCGGAAGTGGCACGAACGGGCCCGTACGGGTGA
ACCCCTTGTCCTTTTTCCAATGGGCCGAGATGATTTTCACCAAAATGTTT
TGGGCAGGATGGAGGATCGCGTTCCCCTTGCTCTCCCCGTCTTTCCACAC
CGGCTGGGCTGCTTTTTCCGCCCTCTTCCTGGTCAGCGAGTTTATGACCG
GGTACTTCCTCGCCTTTAATTTCCAAGTCTCCCACGTCTCCTCCGAATGC
GACTACCCCTTGGGCGAAGCCCCCCGAGAGGGAGAGGATGGCAACATCGT
GGACGAATGGGCGGTCTCCCAAATAAAGAGCAGTGTGGACTATGCGCACA
ACAACCCAGTAACCACCTTCCTCTGCGGCGCCCTGAACTACCAAGTCACT
CACCATCTGTTCCCCACTGTGAGTCAATACCACTACCCAGCCATCGCGCC
CATCATCCAAGACGTGTGTCGGGAGTTCAATGTGGATTACAAGGTTCTGC
CGGATTTTGTGACGGCTTTCCACGCCCACATAGCGCATCTGAAGACGTTG
GGGGAGCGGGGGGAGGCAGCAGAAGTTCACATGGGCTAAGTCTCTTTCGG
AACCGCTTCGGTCGCAAAAGCTCCGCTTCTTCCCTTCTTGTCAATGACGG
CAGTATGGGAAGCACCGAGCCTGTCCTTTCCACGGCGGCCGTACCGGCAA
CGGAGCCGGCGGGGAAATCCTACACATGGCAAGAAGTAGCCGAGCACAAC
ACAGAGAAAAGTTTGTGGGTCACTGTGCGAGGGAAGGTGTACGACATATC
CAGTTGGGTGGACAACCATCCGGGGGGCAAGGAGATCCTGCTGTTGGCGG
CGGGGAGGGACATCACGTACGCCTTCGATTCCTACCACCCGTTCACGGAG
AAACCGACGCAGATGCCTCCGCAGAACGACGCTGCCCTCGGAAGTGGTGC
TCAACAAGTTTGAGATCGGCCGGGTCACCTCCTACGAATTCCCCCAGTAC
AAGGCGGACACTCGTGGTTTCTACAAGGCCCTGTGCACCCGCGTGAATGA
CTACTTTGTGGCCCACAAGCTCAACCCTAAGGACCCAATCCCCGGCATCT
GGCGCATGTGCCTCGTCGCCCTGGTGGCCTTGGCCTCTTTCGTGGTCTGC
AACGGCTACGTGGGTGTGGAAGGGACATGGGCCGGGACTACGTGGGCCCG
GCTAGTGGCGGCGGTGGTGTTTGGGATCTGTCAGGCCCTTCCTTTGTTGC
ACGTCATGCACGACTCCTCCCACCTGGCGTTTGGCAATACAGAACGCTGG
TGGCAGGTGGGGGGGCGGCTGGCGATGGATTTCTTCGCCGGGGCGAACAT
GACCAGCTGGCACAACCAACACGTGATCGGCCACCATATCTACACGAATG
TCTTCCTCGCCGACCCGGATTTACCCGACAAAGCCGCGGGAGATCCGAGA
AGATTGGTGCAGAAACAGGCGTGGCAAGCCATGTATAAATGGCAGCACTT
GTACCTTCCCCCTCTGTACGGCATCCTGGGGATCAAATTTCGAGTCCAAG
ATATCATGGAGACCTTCGGAAGTGGCACGAACGGGCCCGTACGGGTGAAC
CCCTTGTCCTTTTTCCAATGGGCCGAGATGATTTTCACCAAAATGTTTTG
GGCAGGATGGAGGATCGCGTTCCCCTTGCTCTCCCCGTCTTTCCACACCG
GCTGGGCTGCTTTTTCCGCCCTCTTCCTGGTCAGCGAGTTTATGACCGGG
TACTTCCTCGCCTTTAATTTCCAAGTCTCCCACGTCTCCTCCGAATGCGA
CTACCCCTTGGGCGAAGCCCCCCGAGAGGGAGAGGATGGCAACATCGTGG
ACGAATGGGCGGTCTCCCAAATAAAGAGCAGTGTGGACTATGCGCACAAC
AACCCAGTAACCACCTTCCTCTGCGGCGCCCTGAACTACCAAGTCACTCA
CCATCTGTTCCCCACTGTGAGTCAATACCACTACCCAGCCATCGCGCCCA
TCATCCAAGACGTGTGTCGGGAGTTCAATGTGGATTACAAGGTTCTGCCG
GATTTTGTGACGGCTTTCCACGCCCACATAGCGCATCTGAAGACGTTGGG
GGAGCGGGGGGAGGCAGCAGAAGTTCACATGGGCTAAGTCTCTTTCGGAA
CCGCTTCGGTCGCAAAAGCTCCGCTTCTTCCCTTCTTGTCAATGACGGCA
GTATGGGAAGCACCGAGCCTGTCCTTTCCACGGCGGCCGTACCGGCAACG
GAGCCGGCGGGGAAATCCTACACATGGCAAGAAGTAGCCGAGCACAACAC
AGAGAAAAGTTTGTGGGTCACTGTGCGAGGGAAGGTGTACGACATATCCA
GTTGGGTGGACAACCATCCGGGGGGCAAGGAGATCCTGCTGTTGGCGGCG
GGGAGGGACATCACGTACGCCTTCGATTCCTACCACCCGTTCACGGAGAA
ACCGACGCAGATGCCTCCGCAGAACGACGCTGCCCTCGGAAGTG back to top
|