rna6842, rna6842 (mRNA) Nannochloropsis gaditana

Overview
Namerna6842
Unique Namerna6842
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length894
Alignment locationCM002469.1:622247..622597 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103899g1.5167.mrna
Orig protein idgnl|cribi|Naga_103899g1.5167
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:622247..622597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103899g1gene6614Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6842rna6842-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23847.1cds6826Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6842 ID=rna6842|Name=rna6842|organism=Nannochloropsis gaditana|type=mRNA|length=894bp
CATTATGAATTTGCTTTCTCGAGCGAGGACATACTGTAACAACGAAAGAC
TGTTATGCAATGCTTTAAGAGGGTGGCTTCCTCCCCTTTTGTGCGGCTAG
TGTCTGAAAACTAGCGTTCTCGTTTCCAAGCTCACCACCTTTTTATCCCC
CCTCGCTCCTGAAGCAGACCGAGGGCCATGGAGGGTCTTCGCGGCCCGGC
TCTGTCCACAGGAAGGAAAAGCGTCGATTGTCGCCACACGCCATCCATAT
TGGACCTTTTTTCTGTACTCGTCCATCGCGGGCAGGGGTTGTTACGATCG
GCCCTGGCCTGTCCCTCCGTCCGTCGCCTCCGCCTCTCCCCTTTGCCTTC
CTTCCTCTCCATGGCAATCCTTCTCCAGCTCGCACATGCATCCACCACGT
GTATCCCAGTGAATGCGGCGAGAGCATCAAGCCCCTGCTGCTTCATTCTT
CCTCGTCCTTTCCTCTCCCGCATCGCCCTGCGCCTTCCCTCCCTCTCCCC
TCCTGCCTCATCGCATGCGCACATCCGGACAAATCGCCGATTTTCAATGG
TCAATGAAGAGCGCTTGGGTCTCCGGAATGTGGACCCAGAATTTGCGTTT
TTTGACCAAGCACAAATGTATGTCAGAGCCGGGTCTGGGGGGGCCGGGGC
GGCCACCTTCAAGCTGTTGAACGGGCGGCAGAAGGGGATGGCGGACGGCG
GCAGCGGCGGGAAGGGCGGAGACGTGGTCTTCATTTGCGACAGGAAGATC
AACACCTTGCAGGCATTCCGGGGCCGGGCTTCTTTCCATGCCGAGAATGG
GAAGGATGGGGACCGGCAGTTGAAGAATGGAGCGGACGGCCAAGGCGTGG
AGGTCAAGGTACCCCCTCTTTCCCTCCATTCCCCCTCCCTCCCT
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protein sequence of rna6842

>rna6842-protein ID=rna6842-protein|Name=rna6842|organism=Nannochloropsis gaditana|type=polypeptide|length=87bp
MESDSVLAEVSGFLDASSLQTSVTPCLGAMAEKDADGDVRFYAALALQGK
EEVSMASGEDNLSARSVAVLGGGGGGGGGGRDQGGGS
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mRNA from alignment at CM002469.1:622247..622597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6842 ID=rna6842|Name=rna6842|organism=Nannochloropsis gaditana|type=mRNA|length=351bp|location=Sequence derived from alignment at CM002469.1:622247..622597- (Nannochloropsis gaditana)
ATGGAAAGTGATTCTGTAGGGATTAATCTCTATTTTCAGGCATGCCTTCT
TTTGCCAATTTCCCCCTCCCCCCTTCCTTCCCTTCCTCCCGTCCTCAACC
AGGTCTTGGCCGAAGTCTCCGGCTTCCTCGACGCTTCCTCCCTCCAGACC
TCCGTCACGCCCTGCCTCGGGGCCATGGCCGAGAAGGATGCGGACGGTGA
CGTGCGCTTTTATGCGGCTTTGGCGCTGCAGGGGAAAGAGGAGGTATCGA
TGGCTAGTGGGGAGGACAACCTGTCCGCCCGATCGGTGGCGGTGCTGGGA
GGAGGGGGAGGAGGAGGAGGAGGAGGAAGGGACCAAGGGGGAGGGAGTTG
A
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Coding sequence (CDS) from alignment at CM002469.1:622247..622597-

>rna6842 ID=rna6842|Name=rna6842|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at CM002469.1:622247..622597- (Nannochloropsis gaditana)
GTCTTGGCCGAAGTCTCCGGCTTCCTCGACGCTTCCTCCCTCCAGACCTC
CGTCACGCCCTGCCTCGGGGCCATGGCCGAGAAGGATGCGGACGGTGACG
TGCGCTTTTATGCGGCTTTGGCGCTGCAGGGGAAAGAGGAGGTATCGATG
GCTAGTGGGGAGGACAACCTGTCCGCCCGATCGGTGGCGGTGCTGGGAGG
AGGGGGAGGAGGAGGAGGAGGAGGAAGGGACCAAGGGGGAGGGAGTTGAA
TGGAAAGTGATTCTGTCTTGGCCGAAGTCTCCGGCTTCCTCGACGCTTCC
TCCCTCCAGACCTCCGTCACGCCCTGCCTCGGGGCCATGGCCGAGAAGGA
TGCGGACGGTGACGTGCGCTTTTATGCGGCTTTGGCGCTGCAGGGGAAAG
AGGAGGTATCGATGGCTAGTGGGGAGGACAACCTGTCCGCCCGATCGGTG
GCGGTGCTGGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAAGGGACCAAGG
GGGAGGGAGTTGAATGGAAAGTGATTCT
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Synonyms
Publications