rna6838, rna6838 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6838
Unique Name	rna6838
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3314
Alignment location	CM002469.1:614057..615205 +

Link to JBrowse

Properties


Property Name	Value
Product	glucan endo- -beta-glucosidase
Orig transcript id	gnl\|cribi\|Naga_100464g2.7488.mrna
Orig protein id	gnl\|cribi\|Naga_100464g2.7488
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:614057..615205 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100464g2	gene6610	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6838	rna6838-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23854.1	cds6822	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:614057..615205+
coding sequence from alignment at CM002469.1:614057..615205+

mRNA sequence

>rna6838 ID=rna6838|Name=rna6838|organism=Nannochloropsis gaditana|type=mRNA|length=3314bp
CGTCTGGCTGCGGCCTTGAAGCACGCGCCGCGTCCCTCGAACCTTCACAC
AGGGAGGCAACCATCGCCCGTCAATCGCCCCCTCCCCCCCTCCCTCCCTT
CCTCCCCTCCTTCCACCGCTACTGCCTCCGCACGCCGAGTCGCCGCTCCG
TCCTCTCCGCTCCAGGCGTCATCTCCTTTGTCCCCCTCTGCACGCACCCT
CCCACCAGACCCCCCCCTCAAGGTCTGCCCCCCCCCCCGACGTCCAACGC
CTTTTCGCCGAGCTCCTCGCCCGACAAGAAGCCCTCCGTCCCTCCCTCCT
CACCGAGGAAGAGCCTTACCTGAAGGTACTCCGGGCCTGTGTTTTGACCA
ACGACGACGTGACGGCCAGGGCGGTCATCCAACGGATGCCCTCCCCTGCC
CCCGCCCCCTCCCTGCCCGCCTTCAACCTCCTCCTCCACTTGCACGCCAA
GCAAGGGGACACCCTGGGGGCCGAGCGGGTCCTCGGTCAAGTCCTCCAGC
ACGGCCTCCTCCCCACCCTCCTTTCCTACAACACTTTGCTCCACGCCTAT
GTCCGACGCGCGTCCCGGACTCGGCGGGTCTCCGAGAGGGAACGACGCCG
CGTCCGAGCCGTGTATGATGCTTTGCGTACCCATTGCCTCCCATCCCCAT
CATCCACGCCCGGGGAGCCCGATATGGGCCAAAAAGATCGCCCAGACGTG
TACACGATGACGGCCTTGCTCCGGTGGGTGCAGCAAGCGGGCCGTGAGGG
GAAGGGGGGGAAGGAAAAGAACGAGGAAGGAAGCGGGGTTGGGGAGGGCA
ATATGAATTACGAAGATCGAGACCAGCTGCTGTACCGCCAGGTGCTCGAG
GACATAGCGGCATGGGTGCCCCTTACCGCTCGCTCCAGCCACCTTTACAC
GGCTTTGATGGGCGCGGCGGCCAGCCGAAAGGATTGGACCACGGTGGACG
ACGCGTATCGGGAAGCCAAGGAGCATCTTTTGGCTGGAACAATGCCTGCC
CGGGCGTACGCATTTGTGGAGACATGCTACCAGAAAATGCAAGGGTGGCG
ATTGAAGCCGAAAGGGGGCTCTGAAGAAGGAGCAAGGAGTGGAGGGGGCT
GACGGTGGAGGACATGCCAAGCCGTACGACCGCGGACTTTGTCGGTCGTT
CGGAAAAAATTGAGATGCCGGAGGACGAGCGTGGGCGAGGAAGGGGCCTG
ACCTGTAGAATACTGCTGTCCACGCAACTGGTATGTAAAATACTTTAAAA
CATAGCTGAGTTTCTGGAAAAACTTCCTTGTGAGACGAGGATCTGTGATC
AGTGATTCTCCGGGTATTATCTTTCTTTTCATATCGTCATCCCCCACCTC
CCATTGTCCCTCAACGAGCGAAGCGTTCCACCCCAATGTATGTACAAGTT
TCTAAAGATTGAATGCCGTTGACACAGTTGTGCTTTTACATTCTGACACC
GGCAAATGCTGCCATGTCTTCCATCCCCCCCCATCCTCAGAGGCCCGTTT
CGGGTCCCGATTAAAGTGATGACCTTTCACCCTGGCCTTGCCATTGCACC
CTAAATTTGGACACCCCCCTCTCCGTCATTAAACCCCAGTGCGGCTCGAT
GCCTTCCGCTGGCTTCAATTCCTCGTCGAAAGCCTCGAACACGTACACTT
CCCTCCCCGCCTCCCCCTCTTCCACCCCCAGACCTACCCATGAGACCAGC
CCGTTCACGTACGTGCATGCATTCTCCACTGTTGCCGCCTCGCCCCCAGC
CGTCGGCCACCCCGTCTCCCCGATCACAACCCGCATGCTAGGATACCCCC
ATCCGGTCAGAGCCTCCCGGACCCGCTTGTACTCTGCCTCCAACCAGCTC
CCATTTCGGAGCTCCCCTGCAGAGCCCAAGGCGTAGGCCAAGGGAATGCC
TTCTCCTGCGCTTGGGTCAGAACCAGGCTCGGCGAGAGCCTCCACGTAAG
CGGGGTACGGGTGAATATTCATCATGAAAGGAGCCTTTCTCTCGTGGAAG
ATGGGGAGGATGAGGGAAAGGGTTTTGTTCCAAGCTTCAAGGAAAAGGGC
GGGGGTATGCAGAGGGTGCAGAAGCGCCATGGTGAAGGGCACAGTCACTT
TGGCACGCATATCGAGGTTGTCCAAGGCGCTGTTGACCTGCGTCAAGGCA
CGTGGGAGAGCGCGAGATAGGGTGGAGGGAGGTAGACTTTCGTTGGGTTC
GCTGGCCAGAGCGATATATTGAATGAGAGAGTCGTACACTTGCAGGGGTT
GGAGGGCTTCAAAGGCAAGGGAGGGATGGTCAGCGAGGGACAGCATCTCC
TCCGTCGAAAAACCGATTGTGACAGCGGCATTCGGGATCGTTGAGGATAT
GACCTCTAGCGTCGCCATGTCGTGGTCAAAAAGCTTGATTTTATTCACAC
CTATATCGCGCAGCAGCGCAAATGCTTGACCGAAAGGTAAGGGATTCTTG
GCTAAACCAACACCGTAATTAATTCCAAGCAGAGCACGCGGGATAGAGTC
TACAAAATGCGTGCGAAGTGAGTCCTCCCCGGAGGCCGAGACCTCACGGC
GAAGATTGGCGGGAAATGGATGCGTCTCTGCGGGAAGGGCTGCGACTTTC
CCGAATAATAGGTACAGCAATGGTAGTGTGGGTTGCCAAAAGCGGCGTAA
TGGCGGCATTCTGTTGACATAGAGACGGAATTTTTACATAACTGATATGA
GGAGGGGTGATGGGTAGTAACGCGTTTCACTAGATTCAATAATGACCGTG
GACAGTGACAACGCCTCATGCACAAAGGCAATTGAAACATAGATTTGTCG
GATTCGAACATTCGACCCGTCAATGCCATGTGTGATTGAAGCGTTATACG
GACAGAACGGGATGTACGGACACGAAACCTCCTGGCTGCTGACAAAAGCC
CCGGCCGTTGCCACAAGCGCGAAAAAGGGAACAAACCGAGAGGAGTCACG
GCATCGTCACATAAAACGGTCCCGTTTTTGTTTTCCAAAGAAGTTTAGAG
CCATTTCCACGCATAGCTTGGAGCTTGGAGTAAGGGCATCTCAATTGCAT
CGCTAGCGAAGTAACGAACCACTTTCAAAAACCCGCCAAAATGCGTTGCT
ACGCTTATCATGTGTGGTACCAGCGCACAAGGAGGGGGAAAATATATATG
GATGGTTTCCATATTGGCATGCACAACATTTTACGGAAGAGTTTTTGTTG
TTGCAAAGAATTTGATTTGAAATCTGTCTTTCGAGTCGCCCGCCTACGCT
GCCAAACAGGCTCAGATAAAATAGTGTTCAGGAAATAAGTACCATAAGAT
ATCCATGCACATGA

protein sequence of rna6838

>rna6838-protein ID=rna6838-protein|Name=rna6838|organism=Nannochloropsis gaditana|type=polypeptide|length=382bp
MPPLRRFWQPTLPLLYLLFGKVAALPAETHPFPANLRREVSASGEDSLRT
HFVDSIPRALLGINYGVGLAKNPLPFGQAFALLRDIGVNKIKLFDHDMAT
LEVISSTIPNAAVTIGFSTEEMLSLADHPSLAFEALQPLQVYDSLIQYIA
LASEPNESLPPSTLSRALPRALTQVNSALDNLDMRAKVTVPFTMALLHPL
HTPALFLEAWNKTLSLILPIFHERKAPFMMNIHPYPAYVEALAEPGSDPS
AGEGIPLAYALGSAGELRNGSWLEAEYKRVREALTGWGYPSMRVVIGETG
WPTAGGEAATVENACTYVNGLVSWVGLGVEEGEAGREVYVFEAFDEELKP
AEGIEPHWGLMTERGVSKFRVQWQGQGERSSL

mRNA from alignment at CM002469.1:614057..615205+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6838 ID=rna6838|Name=rna6838|organism=Nannochloropsis gaditana|type=mRNA|length=1149bp|location=Sequence derived from alignment at CM002469.1:614057..615205+ (Nannochloropsis gaditana)
ATGCCGCCATTACGCCGCTTTTGGCAACCCACACTACCATTGCTGTACCT
ATTATTCGGGAAAGTCGCAGCCCTTCCCGCAGAGACGCATCCATTTCCCG
CCAATCTTCGCCGTGAGGTCTCGGCCTCCGGGGAGGACTCACTTCGCACG
CATTTTGTAGACTCTATCCCGCGTGCTCTGCTTGGAATTAATTACGGTGT
TGGTTTAGCCAAGAATCCCTTACCTTTCGGTCAAGCATTTGCGCTGCTGC
GCGATATAGGTGTGAATAAAATCAAGCTTTTTGACCACGACATGGCGACG
CTAGAGGTCATATCCTCAACGATCCCGAATGCCGCTGTCACAATCGGTTT
TTCGACGGAGGAGATGCTGTCCCTCGCtgaccatccctcccttgcctttg
AAGCCCTCCAACCCCTGCAAGTGTACGACTCTCTCATTCAATATATCGCT
CTGGCCAGCGAACCCAACGAAAgtctacctccctccaccctatCTCGCGC
TCTCCCACGTGCCTTGACGCAGGTCAACAGCGCCTTGGACAACCTCGATA
TGCGTGCCAAAGTGACTGTGCCCTTCACCATGGCGCTTCTGCACCCTCTG
CATAcccccgcccttttccttgaaGCTTGGAACAaaaccctttccctcat
cctccccatcttccacGAGAGAAAGGCTCCTTTCATGATGAATATTCACC
CGTACCCCGCTTACGTGGAGGCTCTCGCCGAGCCTGGTTCTGACCCaagc
gcaggagaaggcatTCCCTTGGCCTACGCCTTGGGCTCTGCAGGGGAGCT
CCGAAATGGGAGCTGGTTGGAGGCAGAGTACAAGCGGGTCCGGGAGGCTC
TGACCGGATGGGGGTATCCTAGCATGCGGGTTGTGATCGGGGAGACGGGG
TGGCCGACGGCTGGGGGCGAGGCGGCAACAGTGGAGAATGCATGCACGTA
CGTGAACGGGCTGGTCTCATGGGTAGGTctgggggtggaagagggggagg
cggggagggaagtgtACGTGTTCGAGGCTTTCGACGAGGAATTGAAGCCA
GCGGAAGGCATCGAGCCGCACTGGGGTTTAatgacggagaggggggtgTC
CAAATTTAGGGTGCAATGGCAAGGCCAGGGTGAAAGGTCATCACTTTAA

Coding sequence (CDS) from alignment at CM002469.1:614057..615205+

>rna6838 ID=rna6838|Name=rna6838|organism=Nannochloropsis gaditana|type=CDS|length=1149bp|location=Sequence derived from alignment at CM002469.1:614057..615205+ (Nannochloropsis gaditana)
ATGCCGCCATTACGCCGCTTTTGGCAACCCACACTACCATTGCTGTACCT
ATTATTCGGGAAAGTCGCAGCCCTTCCCGCAGAGACGCATCCATTTCCCG
CCAATCTTCGCCGTGAGGTCTCGGCCTCCGGGGAGGACTCACTTCGCACG
CATTTTGTAGACTCTATCCCGCGTGCTCTGCTTGGAATTAATTACGGTGT
TGGTTTAGCCAAGAATCCCTTACCTTTCGGTCAAGCATTTGCGCTGCTGC
GCGATATAGGTGTGAATAAAATCAAGCTTTTTGACCACGACATGGCGACG
CTAGAGGTCATATCCTCAACGATCCCGAATGCCGCTGTCACAATCGGTTT
TTCGACGGAGGAGATGCTGTCCCTCGCtgaccatccctcccttgcctttg
AAGCCCTCCAACCCCTGCAAGTGTACGACTCTCTCATTCAATATATCGCT
CTGGCCAGCGAACCCAACGAAAgtctacctccctccaccctatCTCGCGC
TCTCCCACGTGCCTTGACGCAGGTCAACAGCGCCTTGGACAACCTCGATA
TGCGTGCCAAAGTGACTGTGCCCTTCACCATGGCGCTTCTGCACCCTCTG
CATAcccccgcccttttccttgaaGCTTGGAACAaaaccctttccctcat
cctccccatcttccacGAGAGAAAGGCTCCTTTCATGATGAATATTCACC
CGTACCCCGCTTACGTGGAGGCTCTCGCCGAGCCTGGTTCTGACCCaagc
gcaggagaaggcatTCCCTTGGCCTACGCCTTGGGCTCTGCAGGGGAGCT
CCGAAATGGGAGCTGGTTGGAGGCAGAGTACAAGCGGGTCCGGGAGGCTC
TGACCGGATGGGGGTATCCTAGCATGCGGGTTGTGATCGGGGAGACGGGG
TGGCCGACGGCTGGGGGCGAGGCGGCAACAGTGGAGAATGCATGCACGTA
CGTGAACGGGCTGGTCTCATGGGTAGGTctgggggtggaagagggggagg
cggggagggaagtgtACGTGTTCGAGGCTTTCGACGAGGAATTGAAGCCA
GCGGAAGGCATCGAGCCGCACTGGGGTTTAatgacggagaggggggtgTC
CAAATTTAGGGTGCAATGGCAAGGCCAGGGTGAAAGGTCATCACTTTAA

Synonyms

Publications