rna6837, rna6837 (mRNA) Nannochloropsis gaditana

Overview
Namerna6837
Unique Namerna6837
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length570
Alignment locationCM002469.1:613402..616715 -

Link to JBrowse

Properties
Property NameValue
ProductPentatricopeptide repeat containing protein
Orig transcript idgnl|cribi|Naga_100464g1.7485.mrna
Orig protein idgnl|cribi|Naga_100464g1.7485
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:613402..616715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100464g1gene6609Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23851.1cds6821Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6837rna6837-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6837 ID=rna6837|Name=rna6837|organism=Nannochloropsis gaditana|type=mRNA|length=570bp
ATGCACACAAAGACACTTACTTGTTCAGCACTCCAAGTCAGCCTAATGAC
CTACGCCATGCAATACGACGAGCTCTCTGTGGCCCTTGGGTATGCTCTTT
TCGGCACCGCTGGTGCTCCAGCCGGCAAGGCAGCTCCTGCTGCGAAGTCC
ACAAAAAAACCAGCTGCGGAGGACGATGACATGGATCTCTTCGGGGACGA
TGAGGATGAGACCCCCAAGGCAACGATGTCGCGCGCCGAGCAGGTGGCGG
CCATGAAGGCAGAGAAGGAGGCCAAGGAGAAAGCGAACAAGAAACGGGAT
CGGTCCCAGATCGTTTTGGAGGTAAAACCCACGGACACAGACGTGGACCT
GGATGCGCTATACAAGACCATCAAGAAGGAGGTCTGCCCCCCTGGCTTGA
CCTGGGGGGAGGGTTACAACAAGGCGCCCGTCGCCTTTGGAATTTTCAAG
TTGATCATCTCCCTTGTCGTCTTCGACGACGAAGTCTCTATCGATGACGT
GGTGGACAAAATCGAGGCCATGGAGGACAGTGTGCAGTCCGTGGACATCA
ACTCTTTTAACAAACTCTAA
back to top

protein sequence of rna6837

>rna6837-protein ID=rna6837-protein|Name=rna6837|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MPSPAPAPSLPAFNLLLHLHAKQGDTLGAERVLGQVLQHGLLPTLLSYNT
LLHAYVRRASRTRRVSERERRRVRAVYDALRTHCLPSPSSTPGEPDMGQK
DRPDVYTMTALLRWVQQAGREGKGGKEKNEEGSGVGEGNMNYEDRDQLLY
RQVLEDIAAWVPLTARSSHLYTALMGAAASRKDWTTVDDAYREAKEHLLA
GTMPARAYAFVETCYQKMQGWRLKPKGGSEEGARSGGG
back to top

mRNA from alignment at CM002469.1:613402..616715-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6837 ID=rna6837|Name=rna6837|organism=Nannochloropsis gaditana|type=mRNA|length=3314bp|location=Sequence derived from alignment at CM002469.1:613402..616715- (Nannochloropsis gaditana)
CGTCTGGCTGCGGCCTTGAAGCACGCGCCGCGTCCCTCGAACCTTCACAC
AGGGAGGCAACCATCGCCCGTCAATCGCCCCCTCCCCCCCTCCCTCCCTT
CCTCCCCTCCTTCCACCGCTACTGCCTCCGCACGCCGAGTCGCCGCTCCG
TCCTCTCCGCTCCAGGCGTCATCTCCTTTGTCCCCCTCTGCACGCACCCT
CCCACCAGACCCCCCCCTCAAGGTCTGCCCCCCCCCCCGACGTCCAACGC
CTTTTCGCCGAGCTCCTCGCCCGACAAGAAGCCCTCCGTCCCTCCCTCCT
CACCGAGGAAGAGCCTTACCTGAAGGTACTCCGGGCCTGTGTTTTGACCA
ACGACGACGTGACGGCCAGGGCGGTCATCCAACGGATGCCCTCCCCTGCC
CCCGCCCCCTCCCTGCCCGCCTTCAACCTCCTCCTCCACTTGCACGCCAA
GCAAGGGGACACCCTGGGGGCCGAGCGGGTCCTCGGTCAAGTCCTCCAGC
ACGGCCTCCTCCCCACCCTCCTTTCCTACAACACTTTGCTCCACGCCTAT
GTCCGACGCGCGTCCCGGACTCGGCGGGTCTCCGAGAGGGAACGACGCCG
CGTCCGAGCCGTGTATGATGCTTTGCGTACCCATTGCCTCCCATCCCCAT
CATCCACGCCCGGGGAGCCCGATATGGGCCAAAAAGATCGCCCAGACGTG
TACACGATGACGGCCTTGCTCCGGTGGGTGCAGCAAGCGGGCCGTGAGGG
GAAGGGGGGGAAGGAAAAGAACGAGGAAGGAAGCGGGGTTGGGGAGGGCA
ATATGAATTACGAAGATCGAGACCAGCTGCTGTACCGCCAGGTGCTCGAG
GACATAGCGGCATGGGTGCCCCTTACCGCTCGCTCCAGCCACCTTTACAC
GGCTTTGATGGGCGCGGCGGCCAGCCGAAAGGATTGGACCACGGTGGACG
ACGCGTATCGGGAAGCCAAGGAGCATCTTTTGGCTGGAACAATGCCTGCC
CGGGCGTACGCATTTGTGGAGACATGCTACCAGAAAATGCAAGGGTGGCG
ATTGAAGCCGAAAGGGGGCTCTGAAGAAGGAGCAAGGAGTGGAGGGGGCT
GACGGTGGAGGACATGCCAAGCCGTACGACCGCGGACTTTGTCGGTCGTT
CGGAAAAAATTGAGATGCCGGAGGACGAGCGTGGGCGAGGAAGGGGCCTG
ACCTGTAGAATACTGCTGTCCACGCAACTGGTATGTAAAATACTTTAAAA
CATAGCTGAGTTTCTGGAAAAACTTCCTTGTGAGACGAGGATCTGTGATC
AGTGATTCTCCGGGTATTATCTTTCTTTTCATATCGTCATCCCCCACCTC
CCATTGTCCCTCAACGAGCGAAGCGTTCCACCCCAATGTATGTACAAGTT
TCTAAAGATTGAATGCCGTTGACACAGTTGTGCTTTTACATTCTGACACC
GGCAAATGCTGCCATGTCTTCCATCCCCCCCCATCCTCAGAGGCCCGTTT
CGGGTCCCGATTAAAGTGATGACCTTTCACCCTGGCCTTGCCATTGCACC
CTAAATTTGGACACCCCCCTCTCCGTCATTAAACCCCAGTGCGGCTCGAT
GCCTTCCGCTGGCTTCAATTCCTCGTCGAAAGCCTCGAACACGTACACTT
CCCTCCCCGCCTCCCCCTCTTCCACCCCCAGACCTACCCATGAGACCAGC
CCGTTCACGTACGTGCATGCATTCTCCACTGTTGCCGCCTCGCCCCCAGC
CGTCGGCCACCCCGTCTCCCCGATCACAACCCGCATGCTAGGATACCCCC
ATCCGGTCAGAGCCTCCCGGACCCGCTTGTACTCTGCCTCCAACCAGCTC
CCATTTCGGAGCTCCCCTGCAGAGCCCAAGGCGTAGGCCAAGGGAATGCC
TTCTCCTGCGCTTGGGTCAGAACCAGGCTCGGCGAGAGCCTCCACGTAAG
CGGGGTACGGGTGAATATTCATCATGAAAGGAGCCTTTCTCTCGTGGAAG
ATGGGGAGGATGAGGGAAAGGGTTTTGTTCCAAGCTTCAAGGAAAAGGGC
GGGGGTATGCAGAGGGTGCAGAAGCGCCATGGTGAAGGGCACAGTCACTT
TGGCACGCATATCGAGGTTGTCCAAGGCGCTGTTGACCTGCGTCAAGGCA
CGTGGGAGAGCGCGAGATAGGGTGGAGGGAGGTAGACTTTCGTTGGGTTC
GCTGGCCAGAGCGATATATTGAATGAGAGAGTCGTACACTTGCAGGGGTT
GGAGGGCTTCAAAGGCAAGGGAGGGATGGTCAGCGAGGGACAGCATCTCC
TCCGTCGAAAAACCGATTGTGACAGCGGCATTCGGGATCGTTGAGGATAT
GACCTCTAGCGTCGCCATGTCGTGGTCAAAAAGCTTGATTTTATTCACAC
CTATATCGCGCAGCAGCGCAAATGCTTGACCGAAAGGTAAGGGATTCTTG
GCTAAACCAACACCGTAATTAATTCCAAGCAGAGCACGCGGGATAGAGTC
TACAAAATGCGTGCGAAGTGAGTCCTCCCCGGAGGCCGAGACCTCACGGC
GAAGATTGGCGGGAAATGGATGCGTCTCTGCGGGAAGGGCTGCGACTTTC
CCGAATAATAGGTACAGCAATGGTAGTGTGGGTTGCCAAAAGCGGCGTAA
TGGCGGCATTCTGTTGACATAGAGACGGAATTTTTACATAACTGATATGA
GGAGGGGTGATGGGTAGTAACGCGTTTCACTAGATTCAATAATGACCGTG
GACAGTGACAACGCCTCATGCACAAAGGCAATTGAAACATAGATTTGTCG
GATTCGAACATTCGACCCGTCAATGCCATGTGTGATTGAAGCGTTATACG
GACAGAACGGGATGTACGGACACGAAACCTCCTGGCTGCTGACAAAAGCC
CCGGCCGTTGCCACAAGCGCGAAAAAGGGAACAAACCGAGAGGAGTCACG
GCATCGTCACATAAAACGGTCCCGTTTTTGTTTTCCAAAGAAGTTTAGAG
CCATTTCCACGCATAGCTTGGAGCTTGGAGTAAGGGCATCTCAATTGCAT
CGCTAGCGAAGTAACGAACCACTTTCAAAAACCCGCCAAAATGCGTTGCT
ACGCTTATCATGTGTGGTACCAGCGCACAAGGAGGGGGAAAATATATATG
GATGGTTTCCATATTGGCATGCACAACATTTTACGGAAGAGTTTTTGTTG
TTGCAAAGAATTTGATTTGAAATCTGTCTTTCGAGTCGCCCGCCTACGCT
GCCAAACAGGCTCAGATAAAATAGTGTTCAGGAAATAAGTACCATAAGAT
ATCCATGCACATGA
back to top

Coding sequence (CDS) from alignment at CM002469.1:613402..616715-

>rna6837 ID=rna6837|Name=rna6837|organism=Nannochloropsis gaditana|type=CDS|length=717bp|location=Sequence derived from alignment at CM002469.1:613402..616715- (Nannochloropsis gaditana)
ATGCCCTCCCCTGCCCCCGCCCCCTCCCTGCCCGCCTTCAACCTCCTCCT
CCACTTGCACGCCAAGCAAGGGGACACCCTGGGGGCCGAGCGGGTCCTCG
GTCAAGTCCTCCAGCACGGCCTCCTCCCCACCCTCCTTTCCTACAACACT
TTGCTCCACGCCTATGTCCGACGCGCGTCCCGGACTCGGCGGGTCTCCGA
GAGGGAACGACGCCGCGTCCGAGCCGTGTATGATGCTTTGCGTACCCATT
GCCTCCCATCCCCATCATCCACGCCCGGGGAGCCCGATATGGGCCAAAAA
GATCGCCCAGACGTGTACACGATGACGGCCTTGCTCCGGTGGGTGCAGCA
AGCGGGCCGTGAGGGGAAGGGGGGGAAGGAAAAGAACGAGGAAGGAAGCG
GGGTTGGGGAGGGCAATATGAATTACGAAGATCGAGACCAGCTGCTGTAC
CGCCAGGTGCTCGAGGACATAGCGGCATGGGTGCCCCTTACCGCTCGCTC
CAGCCACCTTTACACGGCTTTGATGGGCGCGGCGGCCAGCCGAAAGGATT
GGACCACGGTGGACGACGCGTATCGGGAAGCCAAGGAGCATCTTTTGGCT
GGAACAATGCCTGCCCGGGCGTACGCATTTGTGGAGACATGCTACCAGAA
AATGCAAGGGTGGCGATTGAAGCCGAAAGGGGGCTCTGAAGAAGGAGCAA
GGAGTGGAGGGGGCTGA
back to top
Synonyms
Publications