rna6830, rna6830 (mRNA) Nannochloropsis gaditana

Overview
Namerna6830
Unique Namerna6830
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1645
Alignment locationCM002469.1:597036..597498 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100903g2.10561.mrna
Orig protein idgnl|cribi|Naga_100903g2.10561
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:597036..597498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100903g2gene6602Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23858.1cds6814Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6830rna6830-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6830 ID=rna6830|Name=rna6830|organism=Nannochloropsis gaditana|type=mRNA|length=1645bp
CTCCTCGCTCCCTCTAGCTCATCGACCTGGACAACTTCGACCAAGAGCTC
CTGGGGACCATCATGGTCCGTCTCTGCAACTGCGGCTGCGCTCAGGACGG
GGAGACCGACCCCCCTGCCCCGTCCTTCTCCTCGCGTCCCCACCCCATCG
CCCCCCCTCCCCCTCCCCGCGTCGACTCCCTGACCCTCATGAGTGAGATC
CTCCGGGGGGCGCACGTGGTCATCGAGAACGACAGAGGGGCCTTCTATTC
CTGGTTCGTGCGGATGCAGGACTCCTACCGACGCACTTCGTCGCACCTCT
CCACCGTGCCCATGTATGGGATCGACCAAGGCTCCGTGCTGAGGACGATT
TTGACGGGTAGGAGGGAGGGAAGGAGAGAAAGAGGAGTCAGAGTTCTGTT
CTTCGTGACGGGCCACCTTATGCTTTCCTCTGCGCGCCACCTGTGTTGCT
GTTATTTCGTTGCACGGAAACGACTCGCCTCCAGTCTCCTAATGCCTGGT
CAGACCGCTCTTACTCGGTATTCACCTACACACCCCTCCCTCACCTGCGC
CCCACGCTTTCCCTCCCGCCCTCCCTACAGGACGGACGGGGGACGGCGAC
ACTTGGATGCAGTTCGAAGGCGCCGGGTGGGACCCGTTCCGGCGTCCCTT
TGAGTCCTTCCTGCACGCCCTGAATTTCGTCCAGTACCGCATCACGGGAC
GGCAGGTCGGGCCCTTGGGAACTAGCGCGTTCACGGACCAACGTCCCGTG
CAATTGCATTTTGACGGTTGTACCAGCGACGGACCGGATATCTTGGGCCG
GCTCTTTCGTCAGCTGGACGCGGAGGACCCTGCGGGGAAGGGACCGATCC
CGACCTTGGCTGGGCTCGTGGATCGAGTGGGCAGGCAAGGGCGTCACTTG
ATGGCGTCCCTCGCGCCATTTTCCCCTGTCTCTACGTTCCGGTGGACGTT
GCGGGAGACCGACGTGGCATCCACAGGGCTTGGTGGAGCGGCGGGGGGGG
GGCAGTGGAGGGAGGGGAAGGGGAGGGGGAGACAGGAATCTGCGGAGAGT
AAATCGTCACTTCTCGTACGAGTGAATTTGGGGCGGTTATTTTGGGAAAC
CGCTTAGGGGGGAGGGGGCTTGAGAGTCGTTGCCGTGTGTGCCATGGTAG
TGTATAATTGGATTCTGTGCTTTGTCTCGGGCCTGCTTGATATATATACG
TAAGACATGTACAGAGTTAGGGGACGCTCTTTCAGAAAGAAGTGCGGGAA
TCCAGGGTAGGAGGGCGGGAAAGGAGGGGTCGAGCCGGGAGCGGACTGCA
GGGTGCCACAAATTTTGAGGAGTGGGAGGGGGGAGGGTGGCGGTCGAATA
GCGGGGGATGGCCTCGGTACCACAGGTCGGGCGGCCTCGGGTGGGGAAGG
GCGCCCGTCGGGACGGGGAACTCGGAGGAGGCCAGGGGGGAGCCCGTGAG
TGTCTTGTACGTGGGTGGCGTCCGAGAGCACGGGAGTGTAGGAGTGGGGT
AGGGAAAGAGGAGTCAGCTGCGGTATCCTAGAGACTGCCTGCATTCGTTG
TGCATCGCTTTGCCGACGATTAGCCCGCGAAACACTTATTATCGGCGGGA
ATCAGAAACAAAGAATTTGAGCGAGAAGCTTTTCTATCTATACCA
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protein sequence of rna6830

>rna6830-protein ID=rna6830-protein|Name=rna6830|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MPMLLRASSVHCTDAPQLPSSHFSVCPSYSSPPSSLSFSTDRPSVACARA
HVAIDYPNRPQQEKYMCKRRGCSPTAHPFLLLRPSSAPRNAPRWAPFHAF
QR
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mRNA from alignment at CM002469.1:597036..597498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6830 ID=rna6830|Name=rna6830|organism=Nannochloropsis gaditana|type=mRNA|length=463bp|location=Sequence derived from alignment at CM002469.1:597036..597498- (Nannochloropsis gaditana)
AGAGGTTCATATTCAACGAGGTCGTCTGAGTAGTCAAGGGGAACGTAAAG
TTTACGATTCTATAGCCACACAGGATGGCGACAACATCGGGTGAGACTGT
GCGTGTCGAGACTTTAAATTGAATGCCTATGTTGTTACGAGCCTCATCGG
TCCATTGTACCGACGCCCCCCAACTACCGAGCAGTCATTTCTCCGTCTGT
CCTTCCTATTCCAGCCCCCCTTCCTCCTTGAGCTTTTCCACTGACCGTCC
CTCTGTGGCATGTGCTCGTGCTCATGTGGCCATCGATTACCCCAACAGGC
CTCAACAGGAAAAGTACATGTGCAAAAGAAGAGGATGTTCTCCTACAGCA
CATCCTTTCCTTCTCCTCCGCCCCTCCTCCGCCCCCCGCAATGCCCCACG
ATGGGCGCCATTCCATGCATTCCAACGATAATTGTCCAACAGCCTCGACG
GACTTCGACTCGG
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Coding sequence (CDS) from alignment at CM002469.1:597036..597498-

>rna6830 ID=rna6830|Name=rna6830|organism=Nannochloropsis gaditana|type=CDS|length=309bp|location=Sequence derived from alignment at CM002469.1:597036..597498- (Nannochloropsis gaditana)
ATGCCTATGTTGTTACGAGCCTCATCGGTCCATTGTACCGACGCCCCCCA
ACTACCGAGCAGTCATTTCTCCGTCTGTCCTTCCTATTCCAGCCCCCCTT
CCTCCTTGAGCTTTTCCACTGACCGTCCCTCTGTGGCATGTGCTCGTGCT
CATGTGGCCATCGATTACCCCAACAGGCCTCAACAGGAAAAGTACATGTG
CAAAAGAAGAGGATGTTCTCCTACAGCACATCCTTTCCTTCTCCTCCGCC
CCTCCTCCGCCCCCCGCAATGCCCCACGATGGGCGCCATTCCATGCATTC
CAACGATAA
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Synonyms
Publications