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Properties
| Property Name | Value |
|---|
| Product | tetratricopeptide repeat family |
| Orig transcript id | gnl|cribi|Naga_100276g7.9389.mrna |
| Orig protein id | gnl|cribi|Naga_100276g7.9389 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:156477..157984 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna683 ID=rna683|Name=rna683|organism=Nannochloropsis gaditana|type=mRNA|length=884bp
CGGACAGACATAATGCGTCCTTTTGGGCACACTTACGCAATTCAGCAACC
CTTTCTTTTCACAGACAGGCCATAAGATTCCAGTACAGCGACTCACTAGT
TGACTAGGAATGCGCAAGCTTCTATTTTCAACGACAATCGTCGCGTTTGT
GTTAATACTCGTTCGAGGAGGAAACGCCGCAGACCTCACAGGGAACAGTT
CCAAGCTTCGGGCTGGGAAAAGCACAGCAGGAGCCGTCTCGACACAAAAG
CACGTCGATTATAAATTGTCCGAACAACAACAAGAACAACAAGACAAACA
GCAAGAACAACAGCAAGAAGTTCAGTTTGAACGAAAACCGTCTGAGGAAG
AAATTAAGGCCCTTATGTCACATCGACAAGCAGCCTTGCCTGCGTACCAA
ACAGCAAAGGAGCAGTTCGATAGGGTGACCCTGCACAGGAAGGCAAGGTT
TGACAGGATGCTCGAGGAGGGGGAGAAAGCCGCGTTCGCTTCCGGCGACC
AATCGCATGGGTTTATCTATGGCAAAATGGCCGTACTGAAGGAAGAGACA
CGAAGGGAACAAGCAAATCGACGTCTTCTACATCGTGCCAGAGATTAGAG
AGGCGCAAGGGAGGAGAAGTGCGAACCTAAGACGTTGTTAAATGCCTCCA
TAGAACTTTTCTCTTACTCGCATATAGAGCAAGCTTCCAGACTTAACGTC
CGAATTCATTTGCAGATTAGTTTCTCATTCATAAAGTAAATGAGCCGTTA
CTAGCTACATGTGCTTTGAGTGTCAATGTGTTGTACATGACATAAGTCGT
CACCATGGAAGTAGCCTTGGTAGCAATCTCAGGGTACGCATGTATCAAAA
ATGAAATCAAAGGATTCTTTGTTGTTGCGCCACA back to topprotein sequence of rna683 >rna683-protein ID=rna683-protein|Name=rna683|organism=Nannochloropsis gaditana|type=polypeptide|length=464bp
MTKTPDSCNTGRAQAVRTLRQCSQDIAQYSDPQCDEDYVKLIGILEKKAR
ALDALNQYSQMSACLEKIVKLARSSLPSHNLSLPNALEGLAECRAIMGDR
VAAVSLFKECLEVRELAGMLETHPSQTACLKRMGDLHRDQDSLDKALEIY
LEVLSLRRSIAKPDAGKKEVAKLAEALHDVGTTYHLCGEFERAIPFLKDA
LELKEKIASTRSGKGGSRGEEVKDATTEESEKDDIVEEGQEEEEVFMEMM
YGLASTYAKNAEYTLAQPIYTELIARRRNEDPPNYIKLAQALTNVGAMHM
EAGNCALALPFQEEALDILRMVLPESHPQIAQALGNLGEVYRRLEDHDRA
LKLFQASLAMQRARGAASAMGKDSLEGISPMSMAGILNNLALLYRAMDKY
TQAEQQLEEAVAWVKRAVPSGHPYITSMEKSLSALRHEAKDKAAGTYDPT
MYAETWGLHSKIVT back to topmRNA from alignment at CM002456.1:156477..157984- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna683 ID=rna683|Name=rna683|organism=Nannochloropsis gaditana|type=mRNA|length=1508bp|location=Sequence derived from alignment at CM002456.1:156477..157984- (Nannochloropsis gaditana)
CAACACGTACAATCGCAACCACAGGCGCATCGTCAAATAAGATGACTAAG
ACCCCTGACAGCTGCAATACCGGCCGCGCGCAAGCCGTACGGACGTTACG
ACAATGCTCACAAGACATTGCACAGTATAGTGATCCACAGTGTGATGAAG
ATTATGTGAAATTGATCGGAATCTTGGAGAAAAAGGCTCGCGCTTTAGAT
GCCCTAAATCAATACAGTCAGATGAGTGCTTGCTTGGAGAAGATCGTCAA
GTTGGCCCGAAGCAGTCTTCCCTCGCACAATCTCTCGCTGCCTAATGCCT
TAGAAGGCCTGGCAGAATGTCGGGCTATAATGGGGGACAGAGTGGCAGCC
GTTTCTTTGTTTAAGGAATGCCTCGAGGTGCGAGAACTTGCAGGGATGCT
CGAAACCCATCCATCTCAGACGGCCTGCTTGAAGCGTATGGGCGATCTGC
ACCGTGACCAGGACTCATTGGACAAAGCTTTGGAAATCTACTTAGAAGTG
TTGTCTTTGCGTCGATCGATTGCAAAGCCTGATGCCGGCAAGAAGGAGGT
GGCGAAATTGGCGGAAGCACTTCACGATGTTGGGACCACCTACCACCTTT
GTGGGGAGTTTGAACGTGCGATTCCTTTTTTGAAGGATGCCTTGGAATTG
AAAGAGAAAATTGCGAGCACAAGGAGCGGGAAAGGGGGAAGTCGCGGGGA
AGAAGTAAAGGATGCGACGACCGAGGAAAGCGAGAAGGATGATATCGTGG
AGGAAGGACAAGAGGAAGAGGAGGTTTTCATGGAAATGATGTACGGCCTT
GCTTCCACTTATGCCAAAAATGCAGAGTACACTCTGGCACAGCCGATTTA
TACCGAGCTGATCGCGCGGAGGCGCAATGAGGACCCTCCAAATTATATCA
AACTAGCGCAGGCGCTGACGAACGTGGGAGCCATGCACATGGAGGCAGGA
AACTGCGCCTTAGCCTTGCCATTCCAAGAGGAAGCTTTAGACATCCTCAG
AATGGTTCTTCCGGAATCCCATCCTCAAATAGCACAGGCTTTGGGCAACC
TGGGGGAAGTTTATCGGCGCCTGGAAGATCATGACCGTGCTCTCAAACTG
TTTCAGGCATCTCTAGCCATGCAACGGGCACGGGGAGCGGCCTCGGCGAT
GGGAAAAGACAGCCTTGAGGGCATAAGCCCTATGAGCATGGCTGGTATTC
TGAATAATTTGGCACTGCTTTATCGGGCGATGGATAAGTATACGCAAGCC
GAACAACAACTGGAAGAGGCTGTTGCTTGGGTGAAAAGAGCAGTCCCATC
AGGCCATCCCTACATTACAAGCATGGAAAAGAGTTTGTCAGCTTTGCGTC
ACGAAGCGAAGGATAAAGCTGCAGGCACGTACGATCCAACGATGTACGCA
GAGACCTGGGGATTGCATAGCAAAATAGTAACATGATCGATGTTTTCTTG
GACGCAACGCATACAGTCTTTTTTAAAATCAAGATGAAACGAAAAACTGT
TTGAAGCC back to topCoding sequence (CDS) from alignment at CM002456.1:156477..157984- >rna683 ID=rna683|Name=rna683|organism=Nannochloropsis gaditana|type=CDS|length=1395bp|location=Sequence derived from alignment at CM002456.1:156477..157984- (Nannochloropsis gaditana)
ATGACTAAGACCCCTGACAGCTGCAATACCGGCCGCGCGCAAGCCGTACG
GACGTTACGACAATGCTCACAAGACATTGCACAGTATAGTGATCCACAGT
GTGATGAAGATTATGTGAAATTGATCGGAATCTTGGAGAAAAAGGCTCGC
GCTTTAGATGCCCTAAATCAATACAGTCAGATGAGTGCTTGCTTGGAGAA
GATCGTCAAGTTGGCCCGAAGCAGTCTTCCCTCGCACAATCTCTCGCTGC
CTAATGCCTTAGAAGGCCTGGCAGAATGTCGGGCTATAATGGGGGACAGA
GTGGCAGCCGTTTCTTTGTTTAAGGAATGCCTCGAGGTGCGAGAACTTGC
AGGGATGCTCGAAACCCATCCATCTCAGACGGCCTGCTTGAAGCGTATGG
GCGATCTGCACCGTGACCAGGACTCATTGGACAAAGCTTTGGAAATCTAC
TTAGAAGTGTTGTCTTTGCGTCGATCGATTGCAAAGCCTGATGCCGGCAA
GAAGGAGGTGGCGAAATTGGCGGAAGCACTTCACGATGTTGGGACCACCT
ACCACCTTTGTGGGGAGTTTGAACGTGCGATTCCTTTTTTGAAGGATGCC
TTGGAATTGAAAGAGAAAATTGCGAGCACAAGGAGCGGGAAAGGGGGAAG
TCGCGGGGAAGAAGTAAAGGATGCGACGACCGAGGAAAGCGAGAAGGATG
ATATCGTGGAGGAAGGACAAGAGGAAGAGGAGGTTTTCATGGAAATGATG
TACGGCCTTGCTTCCACTTATGCCAAAAATGCAGAGTACACTCTGGCACA
GCCGATTTATACCGAGCTGATCGCGCGGAGGCGCAATGAGGACCCTCCAA
ATTATATCAAACTAGCGCAGGCGCTGACGAACGTGGGAGCCATGCACATG
GAGGCAGGAAACTGCGCCTTAGCCTTGCCATTCCAAGAGGAAGCTTTAGA
CATCCTCAGAATGGTTCTTCCGGAATCCCATCCTCAAATAGCACAGGCTT
TGGGCAACCTGGGGGAAGTTTATCGGCGCCTGGAAGATCATGACCGTGCT
CTCAAACTGTTTCAGGCATCTCTAGCCATGCAACGGGCACGGGGAGCGGC
CTCGGCGATGGGAAAAGACAGCCTTGAGGGCATAAGCCCTATGAGCATGG
CTGGTATTCTGAATAATTTGGCACTGCTTTATCGGGCGATGGATAAGTAT
ACGCAAGCCGAACAACAACTGGAAGAGGCTGTTGCTTGGGTGAAAAGAGC
AGTCCCATCAGGCCATCCCTACATTACAAGCATGGAAAAGAGTTTGTCAG
CTTTGCGTCACGAAGCGAAGGATAAAGCTGCAGGCACGTACGATCCAACG
ATGTACGCAGAGACCTGGGGATTGCATAGCAAAATAGTAACATGA back to top
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