rna6823, rna6823 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6823
Unique Name	rna6823
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1869
Alignment location	CM002469.1:584384..586504 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100202g6.197.mrna
Orig protein id	gnl\|cribi\|Naga_100202g6.197
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:584384..586504 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100202g6	gene6595	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6823	rna6823-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23872.1	cds6807	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:584384..586504-
coding sequence from alignment at CM002469.1:584384..586504-

mRNA sequence

>rna6823 ID=rna6823|Name=rna6823|organism=Nannochloropsis gaditana|type=mRNA|length=1869bp
TGGGTAGAGCCCTGGCTCTGCAGTGGCCCATCGGTCCTATTTAATCCCCT
TCACGACAGGCATCAAGAAGACAACGAATGCCCTTTTTTTCCCGATTCAT
CCCGCTGCTTTTGCTGCTTCACGCCTTTCTTTTTGGTTTGGACACGTCCA
TTGCTTTTGGCACGAACACGGACCCGTCAAGTGATCTTGGATTTGTAAAC
CCGCCATCACATAGCTGCCAGGGCTCACAACAAGCAGCCAGGCATAATCA
GGGATCTTCGAAGTCTCGCGCCAACATTAACACCTGTACGGCAAGCGCTG
TGATGCCTGCGGGCAATTCCGCAGATCCTGTCATGGCCGGTTGCGGTTTG
CCAATTTCTCGGATCGGCTATGGCACCTACCGCATCGGCTTGAATAATGC
GGAGCAGGCAGAGTCATTGCGGGAAGCTCTGCTGCACGGTATCAACGTCA
TCGACACTTCCGCCAACTATGGTAATGGCGAGGCAGAGGAATGCATTGGC
CAGGTGGTAAGGGAGCTAATGCAGGAAGGAAAACTTAAACGGGAGGATAT
TCTGCTTGTCAGCAAGGTAGGATATATCCAAGGTCAGAACATGGATCGTT
ACCTAGCCGGCACCGTGCGCACCCCCGACACGGTGGAGGTCGCCTCCTAT
CTCGGGCACTGCATCCACCCAGCCTTTATCCAAGACCAGCTCGGCCGGTC
CTTGGCCCGCTTGGGAATGCCCTCCTTGGACGTCTTCCTCCTCCACAACC
CAGAGTATTACCTGACCCACAACGTCCCGGCCCAAGCAGGTGTCATCAGC
GCCGAGGACCTCCAGACACACCGCGACGAAATGGACCGGCGTCTCTTGGA
GGCCTTTAAGGCGCTGGAAGGGGAGATCGCCTCGGGACAGGGACGGATTC
GGAGCTACGGGATCTCCTCCAACTCCTTCTCCTTGCCTCCCGAGCACCCG
CACTTCCTCCGCTACGACCATTTGGCCGCCATGGCGATGGAAGCGGCCAA
GGCCGTGTCTCCAGAGGCCCAGGTTCACCATTTTAGCACCATCCAGCTCC
CTGCCAATTTGCTCGAACAGGAGGGGCTCCACCGTGCGGTGCAGTGGGCG
GCGCGCACGTCTTTAACGGTCCTGATTAACCGGCCGTTGAACGCCTTCGA
TGACCGAATGAGCCTCCGTCTTGCGGAGTACCCGGATTCTCGTCCTGCGT
ACCACCACGCAAGGGATGCCCTGCTCCAATACATCGACGCGCAAAAGACG
GCTTTGTCGGGCCACGAAAAGGATGGCTACACTCTGTTCCAAGAGGAAGT
GGAAGGGATCGACGCCGCGTTGGCCCAGAAAGACCTCCATAGTGTCCTTG
CTTGGGAAGGCATCTCCTCCCGGATGGTCATGCCCATGCTTCGGCGCGGC
CTGGAGGCGACGGCTCGGCCCGACAAGACCTTCGACGCGGAAGGCATGAG
GCTGGCGCAGGAATACTTGCGTGCCTGTGAGCGCCTTGTCAGCTATTTGA
GCGGAATCCACGCCCGGGAAGAAATTGAAAAAACATTAGGTTTTGGTCCC
ATCCCTGCGGAAAAATCGTTGCAGGAATTTGCCATCGAATTTCTCCTGGA
GCATGCTGGGGTCAGCACGGTCCTGCTGGGCTGTCGAAATACGCGTTATG
TACGAGACGCCATCAAAATCAACGACAAGCACCCCTCCGTGCATCGCTTC
TTACCGCGGTGAAAATAGCCTGGGGTCCAGAGAGAAAATTCAGAAAAAGG
GAGAGTTATCCTCCAGAAATCAAAAAAATGTGTTTCCGCTGACTTTAATC
TTAGTGTTTTGTTATTTTTCACCGCACGTCAAGCCCGTAAAGGGGCTGCT
CCGACACATGTTCTTAAAT

protein sequence of rna6823

>rna6823-protein ID=rna6823-protein|Name=rna6823|organism=Nannochloropsis gaditana|type=polypeptide|length=480bp
MEDIEPHTTTVHAVLFIFVVAYALLLREIIKAVDFAVKMIALKLDPFSEA
SLAFAKQLQVPRLQPQQLQQEEKPSPSHPVKTRPKLSTRIVLPERCPSAI
VQKCRRKKSTVKIPHQRACKVSSVRQVRKDIISKSRPRAPKVEAATEKAV
DRGIPLQKQEDLPKMPVSKKTLHMIALLLDDVYGREYGSAVVRSLPAGLK
YHCWLLKFTKGLIKAEDKRSQALDGKLQAKKGKGTPRARFVVSTPRFSSS
LRLDLSPRPDTTLRAPNTPTIKPRFRQPSSRERLRYWYYYLCLHKMEGKY
AAMLMDAQEEPTKLVPSAKKSSEPAQAMVTGAGSSCSSPVPMSSRFQCTT
PLTVENFTPCESTATRSSENKNEPINKEGREGHYTKHSSADTTSNNRNTN
NNYHSNQSDSSNSSHNILQPSNSHCIGGKSVHDRNGERRSTPAYCKGSGA
LNSYAQLRWQRDALQGRGQIPRYMQPLNRE

mRNA from alignment at CM002469.1:584384..586504-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6823 ID=rna6823|Name=rna6823|organism=Nannochloropsis gaditana|type=mRNA|length=2121bp|location=Sequence derived from alignment at CM002469.1:584384..586504- (Nannochloropsis gaditana)
TTGGACAACTTGTTCAGTTGACGGGTGTTGACCGCATGGATAAGGCATGC
AAACATATATTTACTTTAAATTTTGATTTCAAAGGTGCCTTTTCATGCAT
CGATGACTCCTCAGACAAACTGATCCTGTCTTCAAATGGAAGCAATCGTT
TGCCCACTGGGGATGTATGTGATCAACGACGGCCTTCCCAGCGCTTCCTT
TATAAAGATGTATAAAAGTGAAAACACACAAAAAATTGCCGCCTTGTAAA
TCTTTAAGATAAGGTCATGTAGATACCTATGGGCGCTTTTAATGCCTCTA
ACGACCTCAATTTGTCGAACTGATTTCACCTCAATGCTTAGTTCAGACTA
CTCTTCCGATCGATCTAATTTCTCATGTAATCTAGGGCAATCATGGAGGA
CATAGAGCCGCATACAACTACAGTACACGCGGTATTGTTTATCTTTGTTG
TAGCTTACGCGCTACTACTCAGAGAAATCATAAAAGCCGTGGATTTTGCG
GTAAAGATGATTGCACTGAAGCTGGTACGTCAATGCCCTACGCCATACCC
TTTAATGCATAAACATTCATCAGAAGATTTAATTGCCCTTTGTTTCTTGT
CTGAAGGACCCTTTTTCGGAGGCATCATTGGCGTTCGCGAAGCAGCTGCA
AGTGCCGCGTTTGCAACCGCAGCAGCTACAGCAGGAAGAGAAGCCCTCTC
CGTCGCATCCTGTGAAGACCAGGCCCAAACTCTCAACGAGGATAGTGCTT
CCTGAGAGGTGCCCCTCCGCGATCGTTCAGAAATGTAGAAGAAAGAAGAG
CACTGTCAAGATTCCGCATCAGCGTGCTTGTAAGGTATCGTCGGTGCGTC
AAGTGCGCAAAGACATAATAAGTAAGTCTCGTCCACGTGCTCCGAAAGTG
GAAGCGGCGACAGAAAAGGCTGTAGACCGCGGGATTCCTCTTCAGAAACA
AGAAGACTTACCCAAGATGCCTGTTAGCAAGAAAACCTTGCACATGATTG
CCTTGCTTTTGGACGACGTCTATGGCCGGGAATACGGCTCCGCGGTCGTG
CGATCTTTGCCCGCTGGTCTCAAATATCATTGCTGGCTTTTGAAGTTTAC
CAAGGGTCTCATTAAGGCTGAGGACAAACGCAGTCAAGCCTTAGACGGTA
AGCTGCAAGCTAAGAAAGGGAAAGGGACCCCGCGCGCTCGATTTGTGGTG
AGCACTCCTCGATTTTCAAGCTCTCTTCGGCTCGATCTCTCCCCTCGACC
GGATACAACGCTTCGAGCTCCCAATACTCCCACCATAAAGCCGCGCTTCC
GACAACCCAGCTCCCGAGAACGCCTGCGATATTGGTACTACTACCTGTGT
TTGCATAAGATGGAAGGGAAATACGCGGCCATGTTGATGGATGCACAGGA
AGAGCCCACCAAGCTGGTTCCTAGTGCCAAGAAATCGAGCGAGCCTGCGC
AAGCAATGGTAACGGGAGCCGGCAGCTCCTGTTCGTCCCCGGTTCCAATG
TCATCTCGATTTCAGTGCACCACCCCACTCACAGTGGAAAATTTCACTCC
GTGTGAAAGCACCGCCACCAGAAGCAGCGAGAACAAGAATGAGCCTATTA
ACAAGGAGGGCAGGGAGGGCCATTACACCAAGCACAGCAGTGCCGACACT
ACTTCGAACAACAGGAACACCAACAACAACTATCACAGCAACCAAAGCGA
CAGCAGCAACTCGAGCCACAATATACTTCAACCCAGCAACAGCCATTGCA
TCGGTGGGAAAAGCGTGCACGACCGTAATGGAGAAAGAAGGAGCACCCCT
GCGTACTGCAAGGGATCGGGAGCTCTCAACAGCTACGCACAGCTACGCTG
GCAAAGAGACGCACTGCAAGGCCGTGGCCAGATCCCACGCTATATGCAGC
CGCTGAACCGCGAGTGAGGTGAAAGCATGATATACGGGTAATGGAGGTAA
AGGAGGAGGGAAGCTAATTTCCAGAGGAATTTTAAAGTGAATTTTACGTC
CTCGATATTTCATAATATGAAACGTAAGGATCATTGATGTCAATTTAAGA
ACATGTGTCGGAGCAGCCCCTTTACGGGCTTGACGTGCGGTGAAAAATAA
CAAAACACTAAGATTAAAGTC

Coding sequence (CDS) from alignment at CM002469.1:584384..586504-

>rna6823 ID=rna6823|Name=rna6823|organism=Nannochloropsis gaditana|type=CDS|length=2886bp|location=Sequence derived from alignment at CM002469.1:584384..586504- (Nannochloropsis gaditana)
GACCCTTTTTCGGAGGCATCATTGGCGTTCGCGAAGCAGCTGCAAGTGCC
GCGTTTGCAACCGCAGCAGCTACAGCAGGAAGAGAAGCCCTCTCCGTCGC
ATCCTGTGAAGACCAGGCCCAAACTCTCAACGAGGATAGTGCTTCCTGAG
AGGTGCCCCTCCGCGATCGTTCAGAAATGTAGAAGAAAGAAGAGCACTGT
CAAGATTCCGCATCAGCGTGCTTGTAAGGTATCGTCGGTGCGTCAAGTGC
GCAAAGACATAATAAGTAAGTCTCGTCCACGTGCTCCGAAAGTGGAAGCG
GCGACAGAAAAGGCTGTAGACCGCGGGATTCCTCTTCAGAAACAAGAAGA
CTTACCCAAGATGCCTGTTAGCAAGAAAACCTTGCACATGATTGCCTTGC
TTTTGGACGACGTCTATGGCCGGGAATACGGCTCCGCGGTCGTGCGATCT
TTGCCCGCTGGTCTCAAATATCATTGCTGGCTTTTGAAGTTTACCAAGGG
TCTCATTAAGGCTGAGGACAAACGCAGTCAAGCCTTAGACGGTAAGCTGC
AAGCTAAGAAAGGGAAAGGGACCCCGCGCGCTCGATTTGTGGTGAGCACT
CCTCGATTTTCAAGCTCTCTTCGGCTCGATCTCTCCCCTCGACCGGATAC
AACGCTTCGAGCTCCCAATACTCCCACCATAAAGCCGCGCTTCCGACAAC
CCAGCTCCCGAGAACGCCTGCGATATTGGTACTACTACCTGTGTTTGCAT
AAGATGGAAGGGAAATACGCGGCCATGTTGATGGATGCACAGGAAGAGCC
CACCAAGCTGGTTCCTAGTGCCAAGAAATCGAGCGAGCCTGCGCAAGCAA
TGGTAACGGGAGCCGGCAGCTCCTGTTCGTCCCCGGTTCCAATGTCATCT
CGATTTCAGTGCACCACCCCACTCACAGTGGAAAATTTCACTCCGTGTGA
AAGCACCGCCACCAGAAGCAGCGAGAACAAGAATGAGCCTATTAACAAGG
AGGGCAGGGAGGGCCATTACACCAAGCACAGCAGTGCCGACACTACTTCG
AACAACAGGAACACCAACAACAACTATCACAGCAACCAAAGCGACAGCAG
CAACTCGAGCCACAATATACTTCAACCCAGCAACAGCCATTGCATCGGTG
GGAAAAGCGTGCACGACCGTAATGGAGAAAGAAGGAGCACCCCTGCGTAC
TGCAAGGGATCGGGAGCTCTCAACAGCTACGCACAGCTACGCTGGCAAAG
AGACGCACTGCAAGGCCGTGGCCAGATCCCACGCTATATGCAGCCGCTGA
ACCGCGAGTGAATGGAGGACATAGAGCCGCATACAACTACAGTACACGCG
GTATTGTTTATCTTTGTTGTAGCTTACGCGCTACTACTCAGAGAAATCAT
AAAAGCCGTGGATTTTGCGGTAAAGATGATTGCACTGAAGCTGGACCCTT
TTTCGGAGGCATCATTGGCGTTCGCGAAGCAGCTGCAAGTGCCGCGTTTG
CAACCGCAGCAGCTACAGCAGGAAGAGAAGCCCTCTCCGTCGCATCCTGT
GAAGACCAGGCCCAAACTCTCAACGAGGATAGTGCTTCCTGAGAGGTGCC
CCTCCGCGATCGTTCAGAAATGTAGAAGAAAGAAGAGCACTGTCAAGATT
CCGCATCAGCGTGCTTGTAAGGTATCGTCGGTGCGTCAAGTGCGCAAAGA
CATAATAAGTAAGTCTCGTCCACGTGCTCCGAAAGTGGAAGCGGCGACAG
AAAAGGCTGTAGACCGCGGGATTCCTCTTCAGAAACAAGAAGACTTACCC
AAGATGCCTGTTAGCAAGAAAACCTTGCACATGATTGCCTTGCTTTTGGA
CGACGTCTATGGCCGGGAATACGGCTCCGCGGTCGTGCGATCTTTGCCCG
CTGGTCTCAAATATCATTGCTGGCTTTTGAAGTTTACCAAGGGTCTCATT
AAGGCTGAGGACAAACGCAGTCAAGCCTTAGACGGTAAGCTGCAAGCTAA
GAAAGGGAAAGGGACCCCGCGCGCTCGATTTGTGGTGAGCACTCCTCGAT
TTTCAAGCTCTCTTCGGCTCGATCTCTCCCCTCGACCGGATACAACGCTT
CGAGCTCCCAATACTCCCACCATAAAGCCGCGCTTCCGACAACCCAGCTC
CCGAGAACGCCTGCGATATTGGTACTACTACCTGTGTTTGCATAAGATGG
AAGGGAAATACGCGGCCATGTTGATGGATGCACAGGAAGAGCCCACCAAG
CTGGTTCCTAGTGCCAAGAAATCGAGCGAGCCTGCGCAAGCAATGGTAAC
GGGAGCCGGCAGCTCCTGTTCGTCCCCGGTTCCAATGTCATCTCGATTTC
AGTGCACCACCCCACTCACAGTGGAAAATTTCACTCCGTGTGAAAGCACC
GCCACCAGAAGCAGCGAGAACAAGAATGAGCCTATTAACAAGGAGGGCAG
GGAGGGCCATTACACCAAGCACAGCAGTGCCGACACTACTTCGAACAACA
GGAACACCAACAACAACTATCACAGCAACCAAAGCGACAGCAGCAACTCG
AGCCACAATATACTTCAACCCAGCAACAGCCATTGCATCGGTGGGAAAAG
CGTGCACGACCGTAATGGAGAAAGAAGGAGCACCCCTGCGTACTGCAAGG
GATCGGGAGCTCTCAACAGCTACGCACAGCTACGCTGGCAAAGAGACGCA
CTGCAAGGCCGTGGCCAGATCCCACGCTATATGCAGCCGCTGAACCGCGA
GTGAATGGAGGACATAGAGCCGCATACAACTACAGTACACGCGGTATTGT
TTATCTTTGTTGTAGCTTACGCGCTACTACTCAGAGAAATCATAAAAGCC
GTGGATTTTGCGGTAAAGATGATTGCACTGAAGCTG

Synonyms

Publications