rna6822, rna6822 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6822
Unique Name	rna6822
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2568
Alignment location	CM002469.1:582594..584462 +

Link to JBrowse

Properties


Property Name	Value
Product	aldo keto oxidoreductase
Orig transcript id	gnl\|cribi\|Naga_100202g7.189.mrna
Orig protein id	gnl\|cribi\|Naga_100202g7.189
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:582594..584462 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100202g7	gene6594	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6822	rna6822-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23864.1	cds6806	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:582594..584462+
coding sequence from alignment at CM002469.1:582594..584462+

mRNA sequence

>rna6822 ID=rna6822|Name=rna6822|organism=Nannochloropsis gaditana|type=mRNA|length=2568bp
TTAGGTCAGGCTGAACCGCACGTTCCAAGACAAGAGGCCGACACAAGTTG
TTGGAAGAACGTGTCGTGATCAAGCGCTGGGGGCCGCCTGAGTTCGCGTC
ATGCCTCCCAAAAAAAAGGACAGTGAGGAGGAGGTGGATAGATTGACGCG
AATTGCCATCGTGAACAAGGACAAGTGCAAACCGAAAAAATGCCGCCAAG
AATGCAAGCGCAATTGTCCTGTAGTGCGCCAAGGCAAGTTATGCATTGAG
GTGACCCCTACCAGTAAAATCGCCTTCCTTTCCGAAGAGCTGTGCATCGG
CTGTGGCATTTGCGTGAAGAAATGTCCCTTCGAGGCGATCAACATCATCA
ACCTCCCCAAAAGCCTGGAAGGATCCCAGACGCATCGGTATGGCCCCAAT
TCCTTTAAGCTCCATCGGTTGCCGATGCCGCGACCCGGGCAGGTCTTGGG
ACTTGTGGGTCAGAACGGCACGGGCAAGAGCACTGCCTTGAAAATTTTGG
CGGGAAAGCTCAAGCCGAACTTGGGTCGCTTTGACAATCCCCCTGACTGG
ACGGAAGTTTTGGCCTATTTCAGAGGCTCCGAGCTCCAGAACTACTTCTC
TCGCATCTTGGAGAACAACCTGAAAGCCTTAGTCAAGCCGCAGTACGTGG
ATCACATCCCCAAGGCCGTCAAAGGGAAGGTGGGGCCCTTGTTCCGGGAG
AAGGACCAGAGGGAACGGGCGGAGATCATGTTGGGGGAGATGGACCTCAA
GCATCTTGTGGACCGGAGCGTGGATGCCTTGTCCGGGGGGGAGCTCCAGC
GGTTTACGATCGGGATCGTGTGCGTGCAGGAAGCCGATGTCTACATGTTC
GACGAGCCCTCCTCTTACCTGGACGTGAAGCAACGCCTCCGGGCAGCCCT
GACCATCCGTTCCCTAGTGTCCTCCGGCCAAGGGGGGTCCGAGCAGACCT
ACGTGCTGGTGGTGGAGCACGACTTGGCGGTGCTTGACTACCTCTCTGAC
TACATTTGCTGCCTGTACGGAACGCCCTCCGCCTACGGGGTGGTGACCAT
GCCTTTCTCGGTGAGGGAGGGGATCAACATATTCTTGGCCGGCTTCGTGC
CGACGGAGAACCTCCGATTTCGAGACGAGGCCCTTGTCTTCAAGATCAGC
CAGAGCACGGACGAGGTGGGCACGTCCTCCACCCGGGTGCAGCAATATCG
CTACCCGTCCATGACCAAGACCATGGTCCCCAAGGCCTTGCCCGCCCAAG
AAGGGGGAGAGGCCAGCGGCCTCAAACCCGGGCAGCTGGATCGGCGGAAG
TTCGTGCTCCACGTGGAGGCTGGAACCTTCACGGACAGTGAGATCGTGGT
CATGCTGGGGGAGAACGGGACGGGGAAGACCACTTTTGTGCGGATGCTGG
CGGGGGCCTTGAAGAGCGACGAGGAGGAGGCGGCCTTGGAGCGGGGGGAT
GAGGAGGAGGCGGAGGTCTTGGGGGTCCCGTCCCTGAACGTCTCGTACAA
ACCGCAGAAGATCAGCCCTAAATTCCCAGGCACAGTCCGCGAACTTCTAC
ACGCGAAAATACGCCAAGCCTATTCCCACCCACAGTTTGTCTCCGACGTG
ATGAAGCCATTGAATACGGAAGAAATCATGGACAACGTGGTGCAGAATCT
GTCAGGCGGTGAGCTCCAACGCGTGGCCATCGTCCTGTGTCTGGGCAAGC
CTGCAGATGTCTATTTGATCGACGAGCCGTCCGCGTACCTGGATTCGGAA
CAACGCATTGCTTGCAGCAAGGTGATCAAACGCTTCATTATGCACAGCAA
GAAGACTGCCTTCGTGGTCGAGCACGACTTCATCATGGCCACCTACCTGG
CGGACCGGGTCATCGTCTACGAGGGCGATCCCGGCGTGGAGGCGACCGCT
AACTCCCCGCAGAGCCTCTTGACGGGGATGAACAAGTTCCTGAAGCAGTT
GGAAATCACCTTCCGCCGGGACCCCTCTAATTACCGTCCACGGATCAACA
AGCTGGAGAGTGTCAAGGACCGGGAGCAGAAGCAAGCGGGCACCTATTTC
TTCGCGGACATGGACGAGGCCTAGGAGGGAAGGAGGGAGGGAGGGAGGGG
GGGGAGGGGAGGGAGGGAGGGAAGGAGGAAGGGAGGTCACGATTGAGGAC
GATTGCTCCGAGGAAGAGGAGGGAGGATGGGCGGAAGGGCAAGGAGAATG
GGCCAGGAGGTGTGGGAGGGACATGATGCAATTGAAGCTGAAGGAAGGAA
ATGGATGAAATGATACGGTATGGACGCGAATGACGTGCGACAATCGAGTG
GCACTGGAGTAGAGACAGAATGAGGTTCGGGGCACTGGTAGAGCAGAAGG
GGGTATGATCCGGGCTGAGGATCAAATAAAGAAGCAAAACCGAGAGCGAG
ATGTCGCCCCATGGTAGACAGGAATGGGTCATTGTCGCTCTGGACCAGCC
TGTTTGCGAGCTCACGCAGGGACTCCGAGGCTTCCGGCCGCGCAGGCAAA
GTGCCGGCAGGCGCGTGTTCGCAGGGAGGAAAGCAAGGAGGGGAAGAGGA
GGATTCAAGGTCGGGACC

protein sequence of rna6822

>rna6822-protein ID=rna6822-protein|Name=rna6822|organism=Nannochloropsis gaditana|type=polypeptide|length=544bp
MPFFSRFIPLLLLLHAFLFGLDTSIAFGTNTDPSSDLGFVNPPSHSCQGS
QQAARHNQGSSKSRANINTCTASAVMPAGNSADPVMAGCGLPISRIGYGT
YRIGLNNAEQAESLREALLHGINVIDTSANYGNGEAEECIGQVVRELMQE
GKLKREDILLVSKVGYIQGQNMDRYLAGTVRTPDTVEVASYLGHCIHPAF
IQDQLGRSLARLGMPSLDVFLLHNPEYYLTHNVPAQAGVISAEDLQTHRD
EMDRRLLEAFKALEGEIASGQGRIRSYGISSNSFSLPPEHPHFLRYDHLA
AMAMEAAKAVSPEAQVHHFSTIQLPANLLEQEGLHRAVQWAARTSLTVLI
NRPLNAFDDRMSLRLAEYPDSRPAYHHARDALLQYIDAQKTALSGHEKDG
YTLFQEEVEGIDAALAQKDLHSVLAWEGISSRMVMPMLRRGLEATARPDK
TFDAEGMRLAQEYLRACERLVSYLSGIHAREEIEKTLGFGPIPAEKSLQE
FAIEFLLEHAGVSTVLLGCRNTRYVRDAIKINDKHPSVHRFLPR

mRNA from alignment at CM002469.1:582594..584462+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6822 ID=rna6822|Name=rna6822|organism=Nannochloropsis gaditana|type=mRNA|length=1869bp|location=Sequence derived from alignment at CM002469.1:582594..584462+ (Nannochloropsis gaditana)
TGGGTAGAGCCCTGGCTCTGCAGTGGCCCATCGGTCCTATTTAATCCCCT
TCACGACAGGCATCAAGAAGACAACGAAtgccctttttttcccgATTCAT
CccgctgcttttgctgcttcACGCCTTTCTTTTTGGTTTGGACACGTCCA
TTGCTTTTGGCACGAACACGGACCCGTCAAGTGATCTTGGATTTGTAAAC
CCGCCATCACATAGCTGCCAGGGCTCACAACAAGCAGCCAGGCATAATCA
GGGATCTTCGAAGTCTCGCGCCAACATTAACACCTGTACGGCAAGCGCTG
TGATGCCTGCGGGCAATTCCGCAGATCCTGTCATGGCCGGTTGCGGTTTG
CCAATTTCTCGGATCGGCTATGGCACCTACCGCATCGGCTTGAATAATGC
GGAGCAGGCAGAGTCATTGCGGGAAGCTCTGCTGCACGGTATCAACGTCA
TCGACACTTCCGCCAACTATGGTAAtggcgaggcagaggaaTGCATTGGC
CAGGTGGTAAGGGAGCTAatgcaggaaggaaaacttAAACGGGAGGATAT
TCTGCTTGTCAGCAAGGTAGGATATATCCAAGGTCAGAACATGGATCGTT
ACCTAGCCGGCACCGTGCGCACCCCCGACACGGTGGAGGTCGCCTCCTAT
CTCGGGCACTGCATCCACCCAGCCTTTATCCAAGACCAGCTCGGCCGGTC
CTTGGCCCGCTTGGGAATGCCCTCCTTggacgtcttcctcctccacaacc
cAGAGTATTACCTGACCCACAACGTCCCGGCCCAAGCAGGTGTCATCAGC
GCCGAGGACCTCCAGACACACCGCGACGAAATGGACCGGCGTCTCTTGGA
GGCCTTTAAGgcgctggaaggggagatcGCCTCGGGACAGGGACGGATTC
GGAGCTACGGgatctcctccaactccttctccttgcctcccgaGCACCCG
CACTTCCTCCGCTACGACCATTTGGCCGCCATGGCGATGGAAGCGGCCAA
GGCCGTGTCTCCAGAGGCCCAGGTTCACCATTTTAGCACCATCCAGCTCC
CTGCCAATTTGCTCGAACAGGAGGGGCTCCACCGTGCGGTGCAGTGGGCG
GCGCGCACGTCTTTAACGGTCCTGATTAACCGGCCGTTGAACGCCTTCGA
TGACCGAATGAGCCTCCGTCTTGCGGAGTACCCGGATTCTCGTCCTGCGT
ACCACCACGCAAGGGATGCCCTGCTCCAATACATCGACGCGCAAAAGACG
GCTTTGTCGGGCCACGAAAAGGATGGCTACACTCTGTTccaagaggaagt
ggaagggatCGACGCCGCGTTGGCCCAGAAAGACCTCCATAGTGTCCTTG
CTTGGGAAGGCATCTCCTCCCGGATGGTCATGCCCATGCTTCGGCGCGGC
CTGGAGGCGACGGCTCGGCCCGACAAGACCTTCGACGCGGAAGGCATGAG
GCTGGCGCAGGAATACTTGCGTGCCTGTGAGCGCCTTGTCAGCTATTTGA
GCGGAATCCACGCCCGGGAAGAAATTGAAAAAACATTAGGTTTTGGTCCC
ATCCCTGCGGAAAAATCGTTGCAGGAATTTGCCATCGAATTTCTCCTGGA
GCATGCTGGGGTCAGCACGGTCCTGCTGGGCTGTCGAAATACGCGTTATG
TACGAGACGCCATCAAAATCAACGACAAGCACCCCTCCGTGCATCGCTTC
TTACCGCGGTGAAAATAGCCTGGGGTCCAGAGAGAAAATtcagaaaaagg
gagagttATCCTCCAGAAATCAAAAAAATGTGTTTCCGCTGACTTTAATC
TTAGTGTTTTGTTATTTTTCACCGCACGTCAAGCCCGTAAAGGGGCTGCT
CCGACACATGTTCTTAAAT

Coding sequence (CDS) from alignment at CM002469.1:582594..584462+

>rna6822 ID=rna6822|Name=rna6822|organism=Nannochloropsis gaditana|type=CDS|length=1635bp|location=Sequence derived from alignment at CM002469.1:582594..584462+ (Nannochloropsis gaditana)
AtgccctttttttcccgATTCATCccgctgcttttgctgcttcACGCCTT
TCTTTTTGGTTTGGACACGTCCATTGCTTTTGGCACGAACACGGACCCGT
CAAGTGATCTTGGATTTGTAAACCCGCCATCACATAGCTGCCAGGGCTCA
CAACAAGCAGCCAGGCATAATCAGGGATCTTCGAAGTCTCGCGCCAACAT
TAACACCTGTACGGCAAGCGCTGTGATGCCTGCGGGCAATTCCGCAGATC
CTGTCATGGCCGGTTGCGGTTTGCCAATTTCTCGGATCGGCTATGGCACC
TACCGCATCGGCTTGAATAATGCGGAGCAGGCAGAGTCATTGCGGGAAGC
TCTGCTGCACGGTATCAACGTCATCGACACTTCCGCCAACTATGGTAAtg
gcgaggcagaggaaTGCATTGGCCAGGTGGTAAGGGAGCTAatgcaggaa
ggaaaacttAAACGGGAGGATATTCTGCTTGTCAGCAAGGTAGGATATAT
CCAAGGTCAGAACATGGATCGTTACCTAGCCGGCACCGTGCGCACCCCCG
ACACGGTGGAGGTCGCCTCCTATCTCGGGCACTGCATCCACCCAGCCTTT
ATCCAAGACCAGCTCGGCCGGTCCTTGGCCCGCTTGGGAATGCCCTCCTT
ggacgtcttcctcctccacaacccAGAGTATTACCTGACCCACAACGTCC
CGGCCCAAGCAGGTGTCATCAGCGCCGAGGACCTCCAGACACACCGCGAC
GAAATGGACCGGCGTCTCTTGGAGGCCTTTAAGgcgctggaaggggagat
cGCCTCGGGACAGGGACGGATTCGGAGCTACGGgatctcctccaactcct
tctccttgcctcccgaGCACCCGCACTTCCTCCGCTACGACCATTTGGCC
GCCATGGCGATGGAAGCGGCCAAGGCCGTGTCTCCAGAGGCCCAGGTTCA
CCATTTTAGCACCATCCAGCTCCCTGCCAATTTGCTCGAACAGGAGGGGC
TCCACCGTGCGGTGCAGTGGGCGGCGCGCACGTCTTTAACGGTCCTGATT
AACCGGCCGTTGAACGCCTTCGATGACCGAATGAGCCTCCGTCTTGCGGA
GTACCCGGATTCTCGTCCTGCGTACCACCACGCAAGGGATGCCCTGCTCC
AATACATCGACGCGCAAAAGACGGCTTTGTCGGGCCACGAAAAGGATGGC
TACACTCTGTTccaagaggaagtggaagggatCGACGCCGCGTTGGCCCA
GAAAGACCTCCATAGTGTCCTTGCTTGGGAAGGCATCTCCTCCCGGATGG
TCATGCCCATGCTTCGGCGCGGCCTGGAGGCGACGGCTCGGCCCGACAAG
ACCTTCGACGCGGAAGGCATGAGGCTGGCGCAGGAATACTTGCGTGCCTG
TGAGCGCCTTGTCAGCTATTTGAGCGGAATCCACGCCCGGGAAGAAATTG
AAAAAACATTAGGTTTTGGTCCCATCCCTGCGGAAAAATCGTTGCAGGAA
TTTGCCATCGAATTTCTCCTGGAGCATGCTGGGGTCAGCACGGTCCTGCT
GGGCTGTCGAAATACGCGTTATGTACGAGACGCCATCAAAATCAACGACA
AGCACCCCTCCGTGCATCGCTTCTTACCGCGGTGA

Synonyms

Publications