rna682, rna682 (mRNA) Nannochloropsis gaditana

Overview
Namerna682
Unique Namerna682
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1103
Alignment locationCM002456.1:154991..155970 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100276g8.9386.mrna
Orig protein idgnl|cribi|Naga_100276g8.9386
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:154991..155970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100276g8gene655Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna682rna682-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29985.1cds682Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna682 ID=rna682|Name=rna682|organism=Nannochloropsis gaditana|type=mRNA|length=1103bp
TTCTCGGTTTAACGAGGTCCCTCAGCACCCTTGCCACTGGTATAACATTT
CTCGCTTTGATTCCCTCCTCTTGTAACGCCTTCCTCGCCCCGGGGTCACC
GGCTCGATACCATATGAAAGCAACATCAACTCAAGCTATGAAAGCCGGCA
CCAGCATTGTCCGCCGCAGTCAGGGGCTTCGTGAGATAGTCGACCAATAT
GATGTGTTTCTCATCGATCAGTGGGGTGTTATGCACGACGGTCACGCCGC
CTATCCGGGGGCGGTGGAGTGCATGCAGTCAATTTTGGCCGCCGGCAAGT
ATGTTATTCTCCTGTCTAACTCCTCGAAACGCAAAGCCGGCTCGCTCGCG
CGTCTTACAGACATGGGTTTTCAGCCTGAAAAGTACTTGGACGTTATCAC
GTCGGGCGAGCTCACTTACCTTGGCCTCAAGCCACCACGTTCCCCTTCTT
ACGCAAACATCCGAGGCACAAATGTCCTTGTCTTCGGGTCCGGAGATGAA
GACCGGGAGTACGTGGAATCGTTGGGCTGTCGGGTTTCTCCGGTGGAGGC
GGCCGACTTTCTCTTGGCCCGCGGTCCGTTCACAATACTGGATTCACCCG
ACCCTGCCACGCCGCCTCAAACGTTTGGACCGGGTCGAATCCTGCACGAG
AGCGCAGAGTTTGAAGCGGTGGCCGCCAAAGCCATAGCGCGGGGGCTGCC
CATGATTGTGTCCAATCCCGACATCGTCCGACCTGGCGGCGACAACGACC
CCATGCCCGGGCTTCTCGGGCGTGCCTATGAGCAGAAGGGGGGCCAGGTC
ATGTATGTAGGCAAGCCATACCCTCTGGTGTATCAAGAGTGCCGAAAACG
TCTCGTAGGGCTGAAGCCGGCCGGGGGAAAGGCGGATTGGAGGATATGCG
CAATCGGAGACTCGATGTGGAACGACGTGAAGGGCGCAGTGGACGAAGGC
TGGGCATCTGTCCTGGTCACGGATGGGATCCACGCAGAATCTTTGGGGGT
ACGACAGGGCTCTGGGGAGGAAGTGCCGGGTGAAAGCCTAGATTTCTTCC
TGGAAGGCTTCGCATACCGGCCAAGCCACACAATACCGTGTTTTCGATGG
TAA
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protein sequence of rna682

>rna682-protein ID=rna682-protein|Name=rna682|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MRKLLFSTTIVAFVLILVRGGNAADLTGNSSKLRAGKSTAGAVSTQKHVD
YKLSEQQQEQQDKQQEQQQEVQFERKPSEEEIKALMSHRQAALPAYQTAK
EQFDRVTLHRKARFDRMLEEGEKAAFASGDQSHGFIYGKMAVLKEETRRE
QANRRLLHRARD
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mRNA from alignment at CM002456.1:154991..155970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna682 ID=rna682|Name=rna682|organism=Nannochloropsis gaditana|type=mRNA|length=980bp|location=Sequence derived from alignment at CM002456.1:154991..155970- (Nannochloropsis gaditana)
CGGACAGACATAATGCGTCCTTTTGGGCACACTTACGCAATTCAGCAACC
CTTTCTTTTCACAGACAGGCCATAAGATTCCAGTACAGCGACTCACTAGT
TGACTAGGAATGCGCAAGCTTCTATTTTCAACGACAATCGTCGCGTTTGT
GTTAATACTCGTTCGAGGAGGAAACGCCGCAGACCTCACAGGGAACAGTT
CCAAGCTTCGGGCTGGGAAAAGCACAGCAGGAGCCGTCTCGACACAAAAG
CACGTCGATTATAAATTGTCCGAACAACAACAAGAACAACAAGACAAACA
GCAAGAACAACAGCAAGAAGTTCAGTTTGAACGAAAACCGTCTGAGGAAG
AAATTAAGGCCCTTATGTCACATCGACAAGCAGCCTTGCCTGGTAATGTC
ACAACGGTTCTTTAAAAAAAAACCCTATTTCGAAATCTCATCCTCATAGA
TTTCTCTGACAAATTGGTCTTTCTTTTCATCGTCATAGCGTACCAAACAG
CAAAGGAGCAGTTCGATAGGGTGACCCTGCACAGGAAGGCAAGGTTTGAC
AGGATGCTCGAGGAGGGGGAGAAAGCCGCGTTCGCTTCCGGCGACCAATC
GCATGGGTTTATCTATGGCAAAATGGCCGTACTGAAGGAAGAGACACGAA
GGGAACAAGCAAATCGACGTCTTCTACATCGTGCCAGAGATTAGAGAGGC
GCAAGGGAGGAGAAGTGCGAACCTAAGACGTTGTTAAATGCCTCCATAGA
ACTTTTCTCTTACTCGCATATAGAGCAAGCTTCCAGACTTAACGTCCGAA
TTCATTTGCAGATTAGTTTCTCATTCATAAAGTAAATGAGCCGTTACTAG
CTACATGTGCTTTGAGTGTCAATGTGTTGTACATGACATAAGTCGTCACC
ATGGAAGTAGCCTTGGTAGCAATCTCAGGGTACGCATGTATCAAAAATGA
AATCAAAGGATTCTTTGTTGTTGCGCCACA
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Coding sequence (CDS) from alignment at CM002456.1:154991..155970-

>rna682 ID=rna682|Name=rna682|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002456.1:154991..155970- (Nannochloropsis gaditana)
CGTACCAAACAGCAAAGGAGCAGTTCGATAGGGTGACCCTGCACAGGAAG
GCAAGGTTTGACAGGATGCTCGAGGAGGGGGAGAAAGCCGCGTTCGCTTC
CGGCGACCAATCGCATGGGTTTATCTATGGCAAAATGGCCGTACTGAAGG
AAGAGACACGAAGGGAACAAGCAAATCGACGTCTTCTACATCGTGCCAGA
GATTAGATGCGCAAGCTTCTATTTTCAACGACAATCGTCGCGTTTGTGTT
AATACTCGTTCGAGGAGGAAACGCCGCAGACCTCACAGGGAACAGTTCCA
AGCTTCGGGCTGGGAAAAGCACAGCAGGAGCCGTCTCGACACAAAAGCAC
GTCGATTATAAATTGTCCGAACAACAACAAGAACAACAAGACAAACAGCA
AGAACAACAGCAAGAAGTTCAGTTTGAACGAAAACCGTCTGAGGAAGAAA
TTAAGGCCCTTATGTCACATCGACAAGCAGCCTTGCCTGCGTACCAAACA
GCAAAGGAGCAGTTCGATAGGGTGACCCTGCACAGGAAGGCAAGGTTTGA
CAGGATGCTCGAGGAGGGGGAGAAAGCCGCGTTCGCTTCCGGCGACCAAT
CGCATGGGTTTATCTATGGCAAAATGGCCGTACTGAAGGAAGAGACACGA
AGGGAACAAGCAAATCGACGTCTTCTACATCGTGCCAGAGATTAGATGCG
CAAGCTTCTATTTTCAACGACAATCGTCGCGTTTGTGTTAATACTCGTTC
GAGGAGGAAACGCCGCAGACCTCACAGGGAACAGTTCCAAGCTTCGGGCT
GGGAAAAGCACAGCAGGAGCCGTCTCGACACAAAAGCACGTCGATTATAA
ATTGTCCGAACAACAACAAGAACAACAAGACAAACAGCAAGAACAACAGC
AAGAAGTTCAGTTTGAACGAAAACCGTCTGAGGAAGAAATTAAGGCCCTT
ATGTCACATCGACAAGCAGCCTTGCCTG
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Synonyms
Publications