rna6814, rna6814 (mRNA) Nannochloropsis gaditana

Overview
Namerna6814
Unique Namerna6814
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1301
Alignment locationCM002469.1:564356..566325 -

Link to JBrowse

Properties
Property NameValue
Productprotein phosphatase 1e
Orig transcript idgnl|cribi|Naga_101082g1.4084.mrna
Orig protein idgnl|cribi|Naga_101082g1.4084
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:564356..566325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101082g1gene6588Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23875.1cds6798Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6814rna6814-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6814 ID=rna6814|Name=rna6814|organism=Nannochloropsis gaditana|type=mRNA|length=1301bp
GCTTGCTTCCCATTTCCATCTTCCCATCCTACAGAAAAAGGAGAACAGGT
GGTACTTTGATGGGCGCTAGAAAATCGAGGCACGGAAGCTGTCTTTCTGC
CCTCTCGACTTCTTTCAGCTGCTCATCTTCTCCTCCGAGGCTGTGGTCAC
CCCCTCTCCCTCTCCTTCTTCTCTTCATCCTCCTTATTTTAAGCCACAAC
CATCCCGTCGATTCATTCTCCTGGCCAAATCCGCTGGCGAGTTTTTCCCA
AAAAAATAGAGAATGTGTCCGTTCCGTCCGTGCAGTGGCCTTCTCCACCT
GCTCTTACCCCGCGAATAATCCCATCGAGGACCGATACATCGTGGTTGAC
GACCAGATCCCCTCACTCTTTGCATCAGCGTCTTCTTCATCCCTTCCCTA
CTTTCATGCGGCAGTCTTTGATGGCCATGGTGGCGCAGAGGTAGCAGAGA
TGGTCCGAAATACTTTAGTCGGGAAGGTAAAGGAAACCATTGCCAAATTG
CCGCGTCACGCCCAGAAAGATGAGACCGTGGTACGTGCCAGACGCAGAGC
GCAAAATGCACTTCGCGAGCGGGTGATTGTTGCACCTGTGTGGTATAGCG
TGTCGTCCAAGGTCGGTCCGTGAAGCCCTCTTTCCCCTTCTCCCCTGCAG
ATCACGAACGCCCTCATCAATGCCTTCATCCAAGTGGAGAGCCTGTGGAT
CGAAAGCGTGCTGGCCCTGGAAAACGAGCTGACGCAGCGGAAAAAGGCCA
CGGTCGGTGCCTGTGCCCTCTACACCCTGATCAAAGACAATATTCTGTAC
GTGGCGAACGCCGGCGACTGTCGTGCAGTGATGGGCAAGCTCCGGCACCC
CGCCAAGCCCGCCTCCGCCCCTCCCTCCCTCATCCCTTCTCCGCACCCGT
CCTCCACGGCCGTCTACGAGGCCATACCCATGTCTCTCGACCACAACGCA
CGGGAGGAGCGCGAACACGCCCGCTTGCGGAAAGCGCACCCGGGGGAGGA
TGAGGACATTGTCCTCTGCTACCACGGGGGGCGGGCCTGCTATGTGAAGG
GGAGGCTGCAGCCGTCCCGAGCCTTTGGAGACATTCACTTGAAGCTGGAT
GGTCAGAAGGGAGGGAGGGAGGGAGGGAGGATGGATGCTTTCATTGGATT
TTGACCGCTCGAGCCTCGTGGGGAGGGGGAAGCGAGAGGGAGGGAGGGAG
GAAAAAGCGAAGACGTGCGGTTTCGGACCTCAACCCCCCTCCCTCCCTCC
CTTCTATCCCAGGAGCTCGAACATCTCCCCCACCTCACCACGCTGGATAT
G
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protein sequence of rna6814

>rna6814-protein ID=rna6814-protein|Name=rna6814|organism=Nannochloropsis gaditana|type=polypeptide|length=453bp
MQPPGTETPGFSPCGSGGAGREGGEEGLGGMAFEMSMEEVLEVGRGVLGG
PRREGAGGRPRGTQGSVRLEKGGREEGEGRVRGRRRPRRALGMSYGAVSL
QGARANQEDQYTAIPDLAGVASGETGAAQGLPKEGQGEQAEMEAFYAIYD
GHCGIGAARYAQQRTHHYLMADPLFVSSPEAAMVNVCRRLDKEVLEMCEQ
EGLYCGTTAILTFFRGRTVYVGNVGDCAAILCRDGKAFPLSSAQTPGRKD
ERERIERANGWVTEEMELFIGQLHRMDLADPSIAEAVDKKVAVNTIHRVC
GNLSVSRSIGDPDFKGFSPHPGEEGLGGTEAGEAGEEDSIFAFPPGHSGV
FHGDLVIADPETRQITVSEADAFLLVACDGFWDVVDEEEAVAQATGLLAG
GLGVSDVAAQLGNLALRLGSSDNVTVVLVVFEHWEEEGEEGAQEEQPGPG
EAR
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mRNA from alignment at CM002469.1:564356..566325-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6814 ID=rna6814|Name=rna6814|organism=Nannochloropsis gaditana|type=mRNA|length=1970bp|location=Sequence derived from alignment at CM002469.1:564356..566325- (Nannochloropsis gaditana)
ATGCAACCGCCTGGGACGGAGACTCCTGGCTTCAGCCCCTGTGGGAGTGG
TGGGGCCGGGAGGGAGGGAGGGGAGGAGGGACTAGGCGGGATGGCGTTCG
AGATGAGCATGGAGGAGGTGCTGGAGGTGGGGAGAGGGGTGCTGGGCGGG
CCCAGGAGGGAGGGAGCGGGAGGAAGGCCGAGAGGGACACAAGGGAGCGT
GCGGCTCGAGAAGGGAGGGAGGGAGGAAGGGGAAGGGCGGGTACGGGGGC
GGCGGCGGCCCCGGAGGGCGTTGGGCATGTCCTACGGCGCCGTGTCCCTC
CAGGGAGCGCGGGCGAACCAGGAAGACCAGTACACGGCCATCCCGGACCT
GGCGGGGGTCGCATCGGGGGAGACGGGGGCCGCGCAGGGGCTGCCGAAGG
AGGGGCAGGGGGAGCAGGCGGAGATGGAGGCGTTCTACGCGATCTATGAC
GGACATTGTGGGATCGGCGCGGCCCGGTACGCACAGCAGCGGACGCATCA
CTACCTGATGGCCGACCCCCTCTTCGTGTCCTCCCCCGAGGCGGCCATGG
TGAACGTGTGTCGGCGCCTGGACAAGGAAGTGCTGGAGATGTGTGAACAA
GAAGGCTTGTACTGCGGGACGACGGCCATTTTGACTTTTTTCCGGGGCCG
GACCGTGTATGTGGGCAACGTGGGAGATTGTGCCGCCATATTGTGTCGGG
ACGGGAAGGCTTTTCCCCTGTCAAGCGCCCAGACGCCCGGGCGGAAGGAC
GAGCGGGAGAGGATCGAGCGGGCCAACGGGTGGGTGACGGAGGAGATGGA
GTTGTTCATCGGACAGCTGCACCGGATGGACTTGGCTGATCCGAGCATCG
CCGAGGCGGTGGACAAAAAGGTGGCGGTCAACACCATCCATCGTGTCTGC
GGGAACTTGAGCGTTTCGCGGAGCATAGGCGACCCGGATTTCAAGGGATT
CAGCCCCCACCCCGGCGAGGAGGGCCTGGGGGGAACCGAGGCGGGGGAGG
CGGGGGAGGAGGACTCGATATTCGCCTTTCCCCCTGGTCATTCGGGTGTC
TTTCACGGGGACCTGGTGATTGCGGACCCCGAGACCCGACAGATCACCGT
GAGTGAGGCCGATGCGTTCCTGCTCGTGGCCTGCGATGGGTTCTGGGACG
TGGTGGATGAGGAGGAGGCGGTGGCGCAGGCCACTGGCCTACTAGCAGGC
GGCTTGGGCGTGTCGGACGTGGCGGCACAGCTGGGAAATTTGGCTCTGCG
GTTGGGGAGCTCGGATAATGTGACTGTGGTGCTGGTCGTCTTTGAGCATT
GGGAGGAGGAGGGGGAGGAAGGGGCACAGGAGGAGCAACCGGGGCCGGGC
GAGGCGAGATAGGGCGAAGAAAAGGTTCTTGGTTGCCCTGGCGGAGGACA
ATTGGAGGGGACGCACGTGCGTGTCGAGATGGAATGATGGATCGCTTCCT
CCACTGGCGGGAGGTAGCGGAATCGAAAACACGTGGGTAGTGTGGTGACG
TTGAGCGAGGAGAAAGGGATGAGGTGTCGTCGGGCCGATCTCCGTCCCCT
GCCACGGGATGGCCACGAGCAAGTGACAACAAGCGTAGTTTAAAGAAATG
ACATCAATACGTTTTGTGACCTGAGACGTAACCAAGAATGACTGCACGAC
AGTTACGATGGACCTACATTTCACGTCGTGCCATCTCTGCGCGGGCCTTC
CTAGCCTCTCGGTTTTGAGCCTATCACCGATGGTCGAAAGGCCAAGCAAG
AATGCTCCATACTTGATAAAATTCTAAAAGCAGGCATGGAATTATTTTTG
AATGACCGCCTAAAATCGTGATCGTGTGCCTATACAATCTCTCACGCCCG
GCTTTTCGTCCACTGATTAGACACCTGCCAGAGCCTAGATGTCGGTTAGA
TCGTATTCGCCTCCAAAAGGCATGGATAAGTGCATTATGCTTGGACAAAG
TGAAATATATCATTCATGCC
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Coding sequence (CDS) from alignment at CM002469.1:564356..566325-

>rna6814 ID=rna6814|Name=rna6814|organism=Nannochloropsis gaditana|type=CDS|length=1362bp|location=Sequence derived from alignment at CM002469.1:564356..566325- (Nannochloropsis gaditana)
ATGCAACCGCCTGGGACGGAGACTCCTGGCTTCAGCCCCTGTGGGAGTGG
TGGGGCCGGGAGGGAGGGAGGGGAGGAGGGACTAGGCGGGATGGCGTTCG
AGATGAGCATGGAGGAGGTGCTGGAGGTGGGGAGAGGGGTGCTGGGCGGG
CCCAGGAGGGAGGGAGCGGGAGGAAGGCCGAGAGGGACACAAGGGAGCGT
GCGGCTCGAGAAGGGAGGGAGGGAGGAAGGGGAAGGGCGGGTACGGGGGC
GGCGGCGGCCCCGGAGGGCGTTGGGCATGTCCTACGGCGCCGTGTCCCTC
CAGGGAGCGCGGGCGAACCAGGAAGACCAGTACACGGCCATCCCGGACCT
GGCGGGGGTCGCATCGGGGGAGACGGGGGCCGCGCAGGGGCTGCCGAAGG
AGGGGCAGGGGGAGCAGGCGGAGATGGAGGCGTTCTACGCGATCTATGAC
GGACATTGTGGGATCGGCGCGGCCCGGTACGCACAGCAGCGGACGCATCA
CTACCTGATGGCCGACCCCCTCTTCGTGTCCTCCCCCGAGGCGGCCATGG
TGAACGTGTGTCGGCGCCTGGACAAGGAAGTGCTGGAGATGTGTGAACAA
GAAGGCTTGTACTGCGGGACGACGGCCATTTTGACTTTTTTCCGGGGCCG
GACCGTGTATGTGGGCAACGTGGGAGATTGTGCCGCCATATTGTGTCGGG
ACGGGAAGGCTTTTCCCCTGTCAAGCGCCCAGACGCCCGGGCGGAAGGAC
GAGCGGGAGAGGATCGAGCGGGCCAACGGGTGGGTGACGGAGGAGATGGA
GTTGTTCATCGGACAGCTGCACCGGATGGACTTGGCTGATCCGAGCATCG
CCGAGGCGGTGGACAAAAAGGTGGCGGTCAACACCATCCATCGTGTCTGC
GGGAACTTGAGCGTTTCGCGGAGCATAGGCGACCCGGATTTCAAGGGATT
CAGCCCCCACCCCGGCGAGGAGGGCCTGGGGGGAACCGAGGCGGGGGAGG
CGGGGGAGGAGGACTCGATATTCGCCTTTCCCCCTGGTCATTCGGGTGTC
TTTCACGGGGACCTGGTGATTGCGGACCCCGAGACCCGACAGATCACCGT
GAGTGAGGCCGATGCGTTCCTGCTCGTGGCCTGCGATGGGTTCTGGGACG
TGGTGGATGAGGAGGAGGCGGTGGCGCAGGCCACTGGCCTACTAGCAGGC
GGCTTGGGCGTGTCGGACGTGGCGGCACAGCTGGGAAATTTGGCTCTGCG
GTTGGGGAGCTCGGATAATGTGACTGTGGTGCTGGTCGTCTTTGAGCATT
GGGAGGAGGAGGGGGAGGAAGGGGCACAGGAGGAGCAACCGGGGCCGGGC
GAGGCGAGATAG
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Synonyms
Publications