rna6813, rna6813 (mRNA) Nannochloropsis gaditana

Overview
Namerna6813
Unique Namerna6813
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length725
Alignment locationCM002469.1:562705..564005 -

Link to JBrowse

Properties
Property NameValue
Productprotein phosphatase
Orig transcript idgnl|cribi|Naga_101082g2.4085.mrna
Orig protein idgnl|cribi|Naga_101082g2.4085
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:562705..564005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101082g2gene6587Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23876.1cds6797Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6813rna6813-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6813 ID=rna6813|Name=rna6813|organism=Nannochloropsis gaditana|type=mRNA|length=725bp
GATTTCGGTCCCGACGACGAAGACATCGCCTGGACCCCTCCCTACGTGAG
CGCCATCCCCGAGGTCGCCTCCATCGCCCTCAACCGCCTCGATCAGTTTC
TGGTGCTGGCCTCGGACGGCCTGTGGGACGTGTTTGAGAACGAGGAGGTG
GTGAGCCTGGTAGTGGGCTGGAGGGAGGAAGGGAGGGAGGGCAGGGCGAT
CGCGACCCTCTTGGTGGAGGCGGCCTTGGAACGGGTGGCAGACAGCCTTG
GGATGAGCGTGGAGGAGCTGGGGAGGGTGAAGGAGGGGAGGGAGCGGCGG
AGGAAGCATGACGACATCACGGTGGTGGTGGTGCTCTTGGAGGAGGAGAG
GAAAGGGGAGTGCCCCTTGGAGGGCTCGCAGGCGTGGGAGGAGGAGATCA
GCGGGGAGGTGGATGACTTTATTTACCCCGAGGAAGAGGGCGGGGCGGAG
GGCGGGGCGGAGGGCGGGATAGAGGGGGGGGAAGAGGGCCGGCCAGACCT
GATGAGTTTGGACGAGGGAAGGAAGGAATTGTAGTCCGGAGGGGAGCAAT
GCGATAGCTTTAGGGTGGGCGAGACTGGCCGAAAAGAGCGCCATTGAAAA
CTCGGTTGCGGGAAGCAGTGGAAAAGAACCACAGCAATGGAGAAAATGTG
AGTAGACGCCCTCTGGGGGGTCAAAGCAATGCCTGAAGGCCGCATGCGAG
CACAAAAACAACGTCGTTCCAGCTG
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protein sequence of rna6813

>rna6813-protein ID=rna6813-protein|Name=rna6813|organism=Nannochloropsis gaditana|type=polypeptide|length=187bp
MGARKSRHGSCLSALSTSFSCSSSPPRLWSPPLPLLLLFILLILSHNHPV
DSFSWPNPLASFSQKNRECVRSVRAVAFSTCSYPANNPIEDRYIVVDDQI
PSLFASASSSSLPYFHAAVFDGHGGAEVAEMVRNTLVGKVKETIAKLPRH
AQKDETVVRARRRAQNALRERVIVAPVWYSVSSKVGP
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mRNA from alignment at CM002469.1:562705..564005-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6813 ID=rna6813|Name=rna6813|organism=Nannochloropsis gaditana|type=mRNA|length=1301bp|location=Sequence derived from alignment at CM002469.1:562705..564005- (Nannochloropsis gaditana)
GCTTGCTTCCCATTTCCATCTTCCCATCCTACAGAAAAAGGAGAACAGGT
GGTACTTTGATGGGCGCTAGAAAATCGAGGCACGGAAGCTGTCTTTCTGC
CCTCTCGACTTCTTTCAGCTGCTCATCTTCTCCTCCGAGGCTGTGGTCAC
CCCCTCTCCCTCTCCTTCTTCTCTTCATCCTCCTTATTTTAAGCCACAAC
CATCCCGTCGATTCATTCTCCTGGCCAAATCCGCTGGCGAGTTTTTCCCA
AAAAAATAGAGAATGTGTCCGTTCCGTCCGTGCAGTGGCCTTCTCCACCT
GCTCTTACCCCGCGAATAATCCCATCGAGGACCGATACATCGTGGTTGAC
GACCAGATCCCCTCACTCTTTGCATCAGCGTCTTCTTCATCCCTTCCCTA
CTTTCATGCGGCAGTCTTTGATGGCCATGGTGGCGCAGAGGTAGCAGAGA
TGGTCCGAAATACTTTAGTCGGGAAGGTAAAGGAAACCATTGCCAAATTG
CCGCGTCACGCCCAGAAAGATGAGACCGTGGTACGTGCCAGACGCAGAGC
GCAAAATGCACTTCGCGAGCGGGTGATTGTTGCACCTGTGTGGTATAGCG
TGTCGTCCAAGGTCGGTCCGTGAAGCCCTCTTTCCCCTTCTCCCCTGCAG
ATCACGAACGCCCTCATCAATGCCTTCATCCAAGTGGAGAGCCTGTGGAT
CGAAAGCGTGCTGGCCCTGGAAAACGAGCTGACGCAGCGGAAAAAGGCCA
CGGTCGGTGCCTGTGCCCTCTACACCCTGATCAAAGACAATATTCTGTAC
GTGGCGAACGCCGGCGACTGTCGTGCAGTGATGGGCAAGCTCCGGCACCC
CGCCAAGCCCGCCTCCGCCCCTCCCTCCCTCATCCCTTCTCCGCACCCGT
CCTCCACGGCCGTCTACGAGGCCATACCCATGTCTCTCGACCACAACGCA
CGGGAGGAGCGCGAACACGCCCGCTTGCGGAAAGCGCACCCGGGGGAGGA
TGAGGACATTGTCCTCTGCTACCACGGGGGGCGGGCCTGCTATGTGAAGG
GGAGGCTGCAGCCGTCCCGAGCCTTTGGAGACATTCACTTGAAGCTGGAT
GGTCAGAAGGGAGGGAGGGAGGGAGGGAGGATGGATGCTTTCATTGGATT
TTGACCGCTCGAGCCTCGTGGGGAGGGGGAAGCGAGAGGGAGGGAGGGAG
GAAAAAGCGAAGACGTGCGGTTTCGGACCTCAACCCCCCTCCCTCCCTCC
CTTCTATCCCAGGAGCTCGAACATCTCCCCCACCTCACCACGCTGGATAT
G
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Coding sequence (CDS) from alignment at CM002469.1:562705..564005-

>rna6813 ID=rna6813|Name=rna6813|organism=Nannochloropsis gaditana|type=CDS|length=564bp|location=Sequence derived from alignment at CM002469.1:562705..564005- (Nannochloropsis gaditana)
ATGGGCGCTAGAAAATCGAGGCACGGAAGCTGTCTTTCTGCCCTCTCGAC
TTCTTTCAGCTGCTCATCTTCTCCTCCGAGGCTGTGGTCACCCCCTCTCC
CTCTCCTTCTTCTCTTCATCCTCCTTATTTTAAGCCACAACCATCCCGTC
GATTCATTCTCCTGGCCAAATCCGCTGGCGAGTTTTTCCCAAAAAAATAG
AGAATGTGTCCGTTCCGTCCGTGCAGTGGCCTTCTCCACCTGCTCTTACC
CCGCGAATAATCCCATCGAGGACCGATACATCGTGGTTGACGACCAGATC
CCCTCACTCTTTGCATCAGCGTCTTCTTCATCCCTTCCCTACTTTCATGC
GGCAGTCTTTGATGGCCATGGTGGCGCAGAGGTAGCAGAGATGGTCCGAA
ATACTTTAGTCGGGAAGGTAAAGGAAACCATTGCCAAATTGCCGCGTCAC
GCCCAGAAAGATGAGACCGTGGTACGTGCCAGACGCAGAGCGCAAAATGC
ACTTCGCGAGCGGGTGATTGTTGCACCTGTGTGGTATAGCGTGTCGTCCA
AGGTCGGTCCGTGA
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Synonyms
Publications