rna6810, rna6810 (mRNA) Nannochloropsis gaditana

Overview
Namerna6810
Unique Namerna6810
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length826
Alignment locationCM002469.1:559420..560536 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101009g3.10313.mrna
Orig protein idgnl|cribi|Naga_101009g3.10313
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:559420..560536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101009g3gene6584Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23879.1cds6794Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6810rna6810-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6810 ID=rna6810|Name=rna6810|organism=Nannochloropsis gaditana|type=mRNA|length=826bp
GTCGGGGAATCCTTTCGGCATGTTCGACGCCCCCCTCCGTCCACGCGCCA
GCCATGCCACAACACCACCAACAACAGCCACCGCCGCCAACGCCGCAACC
GCACGCGGCGCCGGCTGTCTCGGCTTTCGGATCGCCCAGTCCCTTTCCAG
GATTTTGATGCGGAAGGAGGGGTTGTGGAACGAAAAAGAGTTGCGGAGGG
AGGGGTTGTGGAACGAAAAAGAGGTGCGGCATGGTGGCGCCCAGGGGCTA
TCCCTGTGCTTCGGGAAAAAAGCGGATGGGAAAGTGGAGTCGGACGGGCC
CGGAGGCTGATGGTGGTGAGCGTGTAGAGGGAGGGAAGGAGGGAAGGAGA
GAGAGAGGGAGAGAGGAAGCTCGGTGAATGGTTGGGGGGATGATGATTCT
GGAGGAAGCGACGGGAAAGAGAAAGAGAAAGAGAAGTAGGGTTCTGTGGA
CGTGTCATGGTTTGTCAGGGTCCCGTCCGAAGAGGGATGGTTGATGAAAA
TGAAGGGGCCTGAGATGTTGGGGGGAAGATGAGGAGGGATGGGAGGTTGG
GGGCGGACGGAGTCCTTGCTCGGCCTGTCTAGGCTCTTGGGCGGTTTTGT
AGGTAAGATGGAGGGGGAAGGAGGTGTTAAGGCCGCGGGCGATGGGGAGG
GAGGGTATGAAGATTAGTATTACGATGCTGGGAAGGCAGGGAGGAAGGTA
CGAAGGGAGGTGGACGGTAAAGGCCGGTGAGAGACAGCGTGAATTCATTC
CGCATGGTAGGAACTGCAGGAACATGAGGATGTGGTATTTGCAAGGAAAA
AAGTAGGAGGAGGAGCAGGCCCGAGA
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protein sequence of rna6810

>rna6810-protein ID=rna6810-protein|Name=rna6810|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MQCPHKKKGLCTPPVVPSLFLLLFFLFLLLPHLPSTSAIKLFAWGGHQRQ
ELSPALSPYLQEQEEAVQAHDHPCDGRSKRGRSRDDTGNRDATCRNKEFR
GKTQTKTRTLAHVTCPYCLSATDDFFLYTPLSHSGASVPGTGAAPRGGPS
LIGRGEGKEDDSAGEMQWPAVSTLPTSMSAGELARRLYKDKPWVTRGRGG
GGGEAQEESWR
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mRNA from alignment at CM002469.1:559420..560536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6810 ID=rna6810|Name=rna6810|organism=Nannochloropsis gaditana|type=mRNA|length=1117bp|location=Sequence derived from alignment at CM002469.1:559420..560536- (Nannochloropsis gaditana)
GCGAGCGGCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
ATGACGCAATCCACCTACGGCGCACTCTCTGTCTGCAACATTTCCCTACG
CATTTATTGGAGTAACTTGCATTACATTCTGTCTTGTGCTACGTTTGGTT
GTCGCCGTCTGCGCAACGCAAAGCAACACGGAGTGCATTTTCGTGCGCAG
TGGTGTTGGCTGTCTGACTTTCTGGTTTATGACCTCCTCGTATTCTCTTT
CTAATTATTTGCACATCAAATTCCCTCTACCGACGACTAGTGATGCAGTG
CCCACACAAAAAAAAAGGTCTATGTACGCCCCCGGTTGTTCCTTCCCTCT
TCCTCCTCCTCTTTTTCCTCTTCCTCCTTTTGCCCCACCTCCCCTCGACC
TCTGCCATCAAGCTGTTCGCGTGGGGAGGGCACCAAAGACAGGAGCTTTC
GCCTGCTTTGTCTCCCTACCTTCAAGAGCAGGAGGAGGCTGTGCAAGCCC
ATGACCATCCCTGCGATGGTCGCAGTAAGCGCGGCAGGAGTCGTGATGAT
ACGGGAAATAGGGACGCTACTTGCCGAAACAAAGAATTTCGGGGGAAAAC
TCAGACCAAGACCCGGACTTTGGCGCACGTGACCTGCCCATATTGTCTCT
CTGCTACCGACGACTTCTTTCTGTACACTCCCCTATCGCATTCTGGGGCT
TCAGTTCCGGGGACGGGCGCAGCGCCCCGAGGAGGGCCAAGTCTCATCGG
TCGGGGGGAAGGGAAGGAGGATGATTCTGCGGGAGAGATGCAGTGGCCGG
CAGTCTCCACGCTGCCTACCTCCATGTCTGCAGGGGAGCTGGCGCGCCGA
CTGTACAAAGATAAACCGTGGGTGACGCGCGGTCGCGGGGGAGGGGGAGG
GGAAGCGCAAGAAGAGTCTTGGCGATGACCCAGTTGTGGATGCTAGTGTA
CAGTGGATCGGGAGCAAGTGAGGTGAGGAGGAAGAAGTCCAAGCATGGAA
TGTGAGAAGGCATCATTCGATGGCGTGCACAGAAAACTTGCGAGCAAAAT
AACAAAGAAAGGAGCCATAGGGTCTGTCGCCGCAGCCATTCCCACATCGC
GTCTCGGGCCTGCTCCT
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Coding sequence (CDS) from alignment at CM002469.1:559420..560536-

>rna6810 ID=rna6810|Name=rna6810|organism=Nannochloropsis gaditana|type=CDS|length=636bp|location=Sequence derived from alignment at CM002469.1:559420..560536- (Nannochloropsis gaditana)
ATGCAGTGCCCACACAAAAAAAAAGGTCTATGTACGCCCCCGGTTGTTCC
TTCCCTCTTCCTCCTCCTCTTTTTCCTCTTCCTCCTTTTGCCCCACCTCC
CCTCGACCTCTGCCATCAAGCTGTTCGCGTGGGGAGGGCACCAAAGACAG
GAGCTTTCGCCTGCTTTGTCTCCCTACCTTCAAGAGCAGGAGGAGGCTGT
GCAAGCCCATGACCATCCCTGCGATGGTCGCAGTAAGCGCGGCAGGAGTC
GTGATGATACGGGAAATAGGGACGCTACTTGCCGAAACAAAGAATTTCGG
GGGAAAACTCAGACCAAGACCCGGACTTTGGCGCACGTGACCTGCCCATA
TTGTCTCTCTGCTACCGACGACTTCTTTCTGTACACTCCCCTATCGCATT
CTGGGGCTTCAGTTCCGGGGACGGGCGCAGCGCCCCGAGGAGGGCCAAGT
CTCATCGGTCGGGGGGAAGGGAAGGAGGATGATTCTGCGGGAGAGATGCA
GTGGCCGGCAGTCTCCACGCTGCCTACCTCCATGTCTGCAGGGGAGCTGG
CGCGCCGACTGTACAAAGATAAACCGTGGGTGACGCGCGGTCGCGGGGGA
GGGGGAGGGGAAGCGCAAGAAGAGTCTTGGCGATGA
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Synonyms
Publications