rna6809, rna6809 (mRNA) Nannochloropsis gaditana

Overview
Namerna6809
Unique Namerna6809
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length586
Alignment locationCM002469.1:558610..559435 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101009g4.10314.mrna
Orig protein idgnl|cribi|Naga_101009g4.10314
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:558610..559435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101009g4gene6583Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6809rna6809-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23880.1cds6793Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6809 ID=rna6809|Name=rna6809|organism=Nannochloropsis gaditana|type=mRNA|length=586bp
TCGAGGACTTCAATCCCCGGGCAAAGGCGTCGTCCGGGGCGCCACCCCCA
CAGCACCAAGGGCAGGATGACTTCTTCTTCCCTCCCTCAGGCAGCCCGCA
GAACGGAGGCTATAAAGCTGTCGCGCCTCCCACCCCTCCCACCACCACCC
CCTCTTTCCCGGCCTCTTTCTCCACCTCCTTCCCTGCCCCGGCGCCTGCC
TCCACTCCCTTCGTTGCCCCCACCTCCGCCCCTCCCCTCGATCCTTTCCA
GCCTTCCCCTCCCTCCTCCCAGACCCCGGCTCCCCTGCAGCCCCCTCCCT
CCTTCCAGCCCTCCCCCGCGTCCTCCACCCTTCCTCACGCCCCAGCCCCA
CCGCCGCGTCCTCAGGAGCCCGCCTTGGCGGACTTTGGAGACTTCGTACC
TCCCTCCCACCCTCCTGCCCCCCCTCCTACCCTCCCTCCCAAGCCCTCCG
TGCCCGACTGGGGCGCCCTGGTCGACTTGGGGCAACTCAAGCTAGAAGAA
ACGAAGCAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCC
TTTCTCCCACGGGTACGAACACGCCACCTTCAACGA
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protein sequence of rna6809

>rna6809-protein ID=rna6809-protein|Name=rna6809|organism=Nannochloropsis gaditana|type=polypeptide|length=108bp
VGESFRHVRRPPPSTRQPCHNTTNNSHRRQRRNRTRRRLSRLSDRPVPFQ
DFDAEGGVVERKRVAEGGVVERKRGAAWWRPGAIPVLREKSGWESGVGRA
RRLMVVSV
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mRNA from alignment at CM002469.1:558610..559435+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6809 ID=rna6809|Name=rna6809|organism=Nannochloropsis gaditana|type=mRNA|length=826bp|location=Sequence derived from alignment at CM002469.1:558610..559435+ (Nannochloropsis gaditana)
GTCGGGGAATCCTTTCGGCATGTTCgacgcccccctccgtccacgcGCCA
GCCATGCCACAACACCACCAACAACAGCCACCGCCGCCAACGCCGCAACC
GCACGCGGCGCCGGCTGTCTCGGCTTTCGGATCGCCCAGTCCCTTTCCAG
GATTTTgatgcggaaggaggggttgTGGAACGAAAAAGAgttgcggaggg
aggggttgtgGAACGAAAAAGAGGTGCGGCATGGTGGCGCCCAGGGGCTA
TCCCTGTGCTTCGGGAAAAAAGCGGATGGGAAAGTGGAGTCGGACGGGCC
CGGAGGCTGATGGTGGTGAGCgtgtagagggagggaaggagggaaggaga
gagagagggagagaggaagctcGGTGAATGGTTGGGGGGATGATGAttct
ggaggaagcgacgggaaagagaaagagaaagagaagtaGGGTTCTGTGGA
CGTGTCATGGTTTGTCAGGGTCCCGTCCGAAGAGGGATGGTTGATGAAAA
TGAAGGGGCCTGAGATGTtggggggaagatgaggagggatgggaggttGG
GGGCGGACGGAGTCCTTGCTCGGCCTGTCTAGGCTCTTGGGCGGTTTTGT
AGGtaagatggagggggaaggaggtgttAAGGCCGcgggcgatggggagg
gagggtatgAAGATTAGTATTACGATGctgggaaggcagggaggaaggta
cgaagggaggtggacggtAAAGGCCGGTGAGAGACAGCGTGAATTCATTC
CGCATGGTAGGAACTGCAGGAACATGAGGATGTGGTATTTGCAAGGAAAA
aagtaggaggaggagcaggcccgaGA
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Coding sequence (CDS) from alignment at CM002469.1:558610..559435+

>rna6809 ID=rna6809|Name=rna6809|organism=Nannochloropsis gaditana|type=CDS|length=327bp|location=Sequence derived from alignment at CM002469.1:558610..559435+ (Nannochloropsis gaditana)
GTCGGGGAATCCTTTCGGCATGTTCgacgcccccctccgtccacgcGCCA
GCCATGCCACAACACCACCAACAACAGCCACCGCCGCCAACGCCGCAACC
GCACGCGGCGCCGGCTGTCTCGGCTTTCGGATCGCCCAGTCCCTTTCCAG
GATTTTgatgcggaaggaggggttgTGGAACGAAAAAGAgttgcggaggg
aggggttgtgGAACGAAAAAGAGGTGCGGCATGGTGGCGCCCAGGGGCTA
TCCCTGTGCTTCGGGAAAAAAGCGGATGGGAAAGTGGAGTCGGACGGGCC
CGGAGGCTGATGGTGGTGAGCgtgtag
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Synonyms
Publications