rna6808, rna6808 (mRNA) Nannochloropsis gaditana

Overview
Namerna6808
Unique Namerna6808
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length519
Alignment locationCM002469.1:557924..558509 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103065g1.4584.mrna
Orig protein idgnl|cribi|Naga_103065g1.4584
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:557924..558509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103065g1gene6582Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6808rna6808-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23881.1cds6792Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6808 ID=rna6808|Name=rna6808|organism=Nannochloropsis gaditana|type=mRNA|length=519bp
ATGCGCTTACGCCATTACTGCCGGGATAAATTCTTTCTTGTGGTCGGGCG
GGGCGGACCCTCAACCTTCGTCAGCGGAAAGACACATTCCTGTTCTTGGA
CTCTGCCTGTTGCCGGTGCACTTGCCAATAAAGTTTTCACGAGGCAAACT
CTACGAGACCCCAACATTGGAAATATGAATCTTAACATTAATTTAGAAAG
TCTGAAAAATATGGTGGACGAGGCCAAAAATCAGATAGTGCCGCGGACCG
AGATGGAAAAGCGGATGCACGAAGCCCTTTCGAACAAAAACTGGGGCGCT
TCCTCCACTTTGATGAACCAAATTGCGTCGGACACGTACGACTACGAGAA
GTACCACCAAGTATTGAAGGCGATATGGTCCGCGCTTGATCTGCCGGGAC
GAAGCTGGCGGTCGATATTCAAGGCCTTGACCCTGCTGGATCACCTGGTG
AAGAATGGCGCGGAGAGGGTGGTCGAAGAGGTGAGGGAGGGAGGAAAGGA
GGGAGGACACGTGAAGTAG
back to top

protein sequence of rna6808

>rna6808-protein ID=rna6808-protein|Name=rna6808|organism=Nannochloropsis gaditana|type=polypeptide|length=142bp
MTSSSLPQAARRTEAIKLSRLPPLPPPPPLSRPLSPPPSLPRRLPPLPSL
PPPPPLPSILSSLPLPPPRPRLPCSPLPPSSPPPRPPPFLTPQPHRRVLR
SPPWRTLETSYLPPTLLPPLLPSLPSPPCPTGAPWSTWGNSS
back to top

mRNA from alignment at CM002469.1:557924..558509+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6808 ID=rna6808|Name=rna6808|organism=Nannochloropsis gaditana|type=mRNA|length=586bp|location=Sequence derived from alignment at CM002469.1:557924..558509+ (Nannochloropsis gaditana)
TCGAGGACTTCAATCCCCGGGCAAAGGCGTCGTCCGGGGCGCCACCCCCA
CAGCACCAAGGGCAGGAtgacttcttcttccctccctcaggcagCCCGCA
GAACGGAGGCTATAAAGCTGTcgcgcctcccacccctcccaccaccaccc
cctctttcccggcctctttctccacctccttccctgccccggcgcctgcc
tccactcccttcgttgcccccacctccgcccctcccctcgatCCTTTcca
gccttcccctccctcctcccagacccCGGCTCCCCTgcagccccctccct
ccttccagccctcccccgcgtcctccacccttcctcacGCCCCAGCCCCA
CCGCCGCGTCCTCAGGAGCCCGCCTTGGCGGACTTTGGAGACTtcgtacc
tccctcccaccctcctgccccccctcctaccctccctcccaagccctccg
TGCCCGACTGGGGCGCCCTGGTCGACTTGGGGCAACTCAAGCTAGAAGAA
ACgaagcagcaacagcaacagcagcaacagcagcaacagcagcaacagcc
tTTCTCCCACGGGTACGAACACGCCACCTTCAACGA
back to top

Coding sequence (CDS) from alignment at CM002469.1:557924..558509+

>rna6808 ID=rna6808|Name=rna6808|organism=Nannochloropsis gaditana|type=CDS|length=429bp|location=Sequence derived from alignment at CM002469.1:557924..558509+ (Nannochloropsis gaditana)
AtgacttcttcttccctccctcaggcagCCCGCAGAACGGAGGCTATAAA
GCTGTcgcgcctcccacccctcccaccaccaccccctctttcccggcctc
tttctccacctccttccctgccccggcgcctgcctccactcccttcgttg
cccccacctccgcccctcccctcgatCCTTTccagccttcccctccctcc
tcccagacccCGGCTCCCCTgcagccccctccctccttccagccctcccc
cgcgtcctccacccttcctcacGCCCCAGCCCCACCGCCGCGTCCTCAGG
AGCCCGCCTTGGCGGACTTTGGAGACTtcgtacctccctcccaccctcct
gccccccctcctaccctccctcccaagccctccgTGCCCGACTGGGGCGC
CCTGGTCGACTTGGGGCAACTCAAGCTAG
back to top
Synonyms
Publications