rna6781, rna6781 (mRNA) Nannochloropsis gaditana

Overview
Namerna6781
Unique Namerna6781
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length207
Alignment locationCM002469.1:487706..489380 -

Link to JBrowse

Properties
Property NameValue
Product4-hydroxyphenylpyruvate dioxygenase
Orig transcript idgnl|cribi|Naga_100113g9.9964.mrna
Orig protein idgnl|cribi|Naga_100113g9.9964
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:487706..489380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100113g9gene6555Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6781rna6781-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23898.1cds6765Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6781 ID=rna6781|Name=rna6781|organism=Nannochloropsis gaditana|type=mRNA|length=207bp
ATGCGTCTAGCCACATGTTCAACGAAGTTCGGTACGCCCGCCAATGATCT
GAGGATAGGGCGAGAGTCCTTTCCACAAGAACAAGCAGCGGTAGACTTCA
AATGGCCACCACCACATGTTGAACAAATACTAAAACCCTATGGCGAAAAG
CGAATGCGAGCACCTCAGATTTCTGAAACGTGCGTAGCTATATTCTCGTT
CATCTAA
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protein sequence of rna6781

>rna6781-protein ID=rna6781-protein|Name=rna6781|organism=Nannochloropsis gaditana|type=polypeptide|length=525bp
MAKRRPHLVMPLSSAASAALPLTLFLLLAGPALSYLSHVPPIVSKSRVFA
AKQNHHSQLVRQRTPTALTFSTATSSDERGHITRTELVGAAKFVRQNPKS
DRFKVLSFHHVEIYCGDATNTYRRFQLGLGMNLVAKSDLSTGNPLFASYC
LRSQRLQMVFSAPYSMNKVAAEEGSSMGKGEIVERRSSPNPGFEASHATQ
FFNRHGVAVRALGLEVEDARQAYQECVANGGQGVLEPVRLDPSPGLGRDG
YLVMSEVQAYGDVVLRFVSRHGGYAGSFLPGYQEETSAAYTTGAKVERSL
DYGLERIDHAVGNVWELNEAVSYLEKMTGFHPFAEFVAKDVGTVDSGLNS
VVLANNAEDVLIPLNEPTYGTKRKSQIQTYLECNNGPGLQHLALATRDIF
TTMRKMRAVSEMGGFTFMAPPPPSYYRALPERLGGSLTASQLAQIEELGL
LADKDDQGVLLQIFTVPVGDRPTLFLEIIQRIGCESPDPNHSEQTKQRGG
CGGFGKGNFAALFKSIEEYEKTLDV
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mRNA from alignment at CM002469.1:487706..489380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6781 ID=rna6781|Name=rna6781|organism=Nannochloropsis gaditana|type=mRNA|length=1675bp|location=Sequence derived from alignment at CM002469.1:487706..489380- (Nannochloropsis gaditana)
ATGGCCAAAAGAAGACCCCATCTGGTCATGCCCTTATCCTCTGCAGCCAG
CGCCGCGCTTCCTCTGACGTTGTTCCTCCTTCTTGCCGGGCCAGCCCTCT
CGTACCTGTCACATGTGCCCCCGATTGTAAGCAAATCACGCGTTTTTGCG
GCTAAACAAAATCATCATAGCCAGCTCGTACGGCAACGTACCCCAACGGC
TCTGACGTTCAGCACGGCAACCTCATCGGACGAGAGGGGCCACATCACTC
GTACTGAACTCGTGGGAGCGGCCAAGTTTGTACGACAGAACCCTAAATCA
GACCGTTTCAAAGTCTTGAGCTTTCATCACGTGGAAATCTACTGTGGGGA
CGCCACTAACACCTATCGTCGTTTCCAGTTGGGCCTGGGTATGAACCTGG
TGGCCAAGTCGGACTTGTCTACTGGTAATCCGCTTTTCGCAAGTTATTGC
CTGCGGTCCCAGAGGCTGCAGATGGTCTTTAGTGCACCGTACTCCATGAA
TAAGGTGGCAGCAGAAGAAGGGTCGTCGATGGGGAAGGGAGAGATTGTAG
AGAGAAGAAGCAGCCCGAACCCAGGTTTTGAGGCCTCGCACGCCACGCAG
TTCTTCAACAGGCACGGAGTGGCTGTGCGGGCCTTGGGGCTGGAAGTGGA
GGACGCGAGACAAGCGTACCAGGAATGTGTTGCTAACGGCGGACAAGGAG
TGCTAGAGCCTGTCCGACTGGATCCCTCCCCGGGCTTGGGGCGGGACGGG
TACTTGGTGATGTCGGAGGTGCAGGCCTACGGAGACGTTGTCCTGCGCTT
TGTCTCGAGACATGGGGGCTACGCGGGCAGCTTCCTTCCGGGCTATCAGG
AGGAGACAAGTGCGGCTTACACAACGGGTGCCAAGGTGGAAAGGTCTCTT
GACTATGGTCTCGAACGCATCGACCACGCGGTAGGAAACGTCTGGGAGCT
GAACGAGGCTGTGTCGTACTTGGAAAAAATGACGGGCTTCCACCCTTTTG
CGGAATTCGTCGCGAAAGACGTGGGCACTGTCGATTCTGGATTGAACTCC
GTCGTCCTTGCCAACAACGCGGAAGATGTCCTGATCCCCTTGAATGAGCC
CACGTACGGGACCAAGCGGAAGTCTCAGATTCAAACCTACTTAGAGTGCA
ACAACGGCCCCGGATTGCAGCACTTGGCCTTAGCCACGCGCGACATATTC
ACAACAATGCGAAAGATGCGGGCAGTCTCAGAAATGGGCGGCTTCACATT
CATGGCCCCGCCGCCTCCATCGTACTACCGGGCCTTGCCGGAAAGACTGG
GCGGGAGCTTGACGGCCTCGCAGCTGGCACAGATAGAGGAGTTGGGGCTG
CTGGCCGATAAAGACGACCAGGGCGTGTTATTACAGGTAGGGTAGGAGGT
AGGAGGGCATGCAAGGTATTGGAACCGACTGTCGAAAGTCATAATCAGGG
TTCATTGACCTTTCCTCTTCCCTTTTTCCACAGATTTTCACCGTGCCCGT
AGGGGATCGACCAACGCTTTTTCTGGAGATCATTCAACGCATCGGTTGTG
AGTCTCCAGATCCCAATCATTCGGAACAAACGAAACAGAGGGGAGGTTGC
GGTGGGTTTGGGAAGGGAAATTTCGCCGCCCTTTTCAAATCCATAGAGGA
GTATGAAAAAACGCTGGATGTTTAG
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Coding sequence (CDS) from alignment at CM002469.1:487706..489380-

>rna6781 ID=rna6781|Name=rna6781|organism=Nannochloropsis gaditana|type=CDS|length=3156bp|location=Sequence derived from alignment at CM002469.1:487706..489380- (Nannochloropsis gaditana)
ATTTTCACCGTGCCCGTAGGGGATCGACCAACGCTTTTTCTGGAGATCAT
TCAACGCATCGGTTGTGAGTCTCCAGATCCCAATCATTCGGAACAAACGA
AACAGAGGGGAGGTTGCGGTGGGTTTGGGAAGGGAAATTTCGCCGCCCTT
TTCAAATCCATAGAGGAGTATGAAAAAACGCTGGATGTTTAGATGGCCAA
AAGAAGACCCCATCTGGTCATGCCCTTATCCTCTGCAGCCAGCGCCGCGC
TTCCTCTGACGTTGTTCCTCCTTCTTGCCGGGCCAGCCCTCTCGTACCTG
TCACATGTGCCCCCGATTGTAAGCAAATCACGCGTTTTTGCGGCTAAACA
AAATCATCATAGCCAGCTCGTACGGCAACGTACCCCAACGGCTCTGACGT
TCAGCACGGCAACCTCATCGGACGAGAGGGGCCACATCACTCGTACTGAA
CTCGTGGGAGCGGCCAAGTTTGTACGACAGAACCCTAAATCAGACCGTTT
CAAAGTCTTGAGCTTTCATCACGTGGAAATCTACTGTGGGGACGCCACTA
ACACCTATCGTCGTTTCCAGTTGGGCCTGGGTATGAACCTGGTGGCCAAG
TCGGACTTGTCTACTGGTAATCCGCTTTTCGCAAGTTATTGCCTGCGGTC
CCAGAGGCTGCAGATGGTCTTTAGTGCACCGTACTCCATGAATAAGGTGG
CAGCAGAAGAAGGGTCGTCGATGGGGAAGGGAGAGATTGTAGAGAGAAGA
AGCAGCCCGAACCCAGGTTTTGAGGCCTCGCACGCCACGCAGTTCTTCAA
CAGGCACGGAGTGGCTGTGCGGGCCTTGGGGCTGGAAGTGGAGGACGCGA
GACAAGCGTACCAGGAATGTGTTGCTAACGGCGGACAAGGAGTGCTAGAG
CCTGTCCGACTGGATCCCTCCCCGGGCTTGGGGCGGGACGGGTACTTGGT
GATGTCGGAGGTGCAGGCCTACGGAGACGTTGTCCTGCGCTTTGTCTCGA
GACATGGGGGCTACGCGGGCAGCTTCCTTCCGGGCTATCAGGAGGAGACA
AGTGCGGCTTACACAACGGGTGCCAAGGTGGAAAGGTCTCTTGACTATGG
TCTCGAACGCATCGACCACGCGGTAGGAAACGTCTGGGAGCTGAACGAGG
CTGTGTCGTACTTGGAAAAAATGACGGGCTTCCACCCTTTTGCGGAATTC
GTCGCGAAAGACGTGGGCACTGTCGATTCTGGATTGAACTCCGTCGTCCT
TGCCAACAACGCGGAAGATGTCCTGATCCCCTTGAATGAGCCCACGTACG
GGACCAAGCGGAAGTCTCAGATTCAAACCTACTTAGAGTGCAACAACGGC
CCCGGATTGCAGCACTTGGCCTTAGCCACGCGCGACATATTCACAACAAT
GCGAAAGATGCGGGCAGTCTCAGAAATGGGCGGCTTCACATTCATGGCCC
CGCCGCCTCCATCGTACTACCGGGCCTTGCCGGAAAGACTGGGCGGGAGC
TTGACGGCCTCGCAGCTGGCACAGATAGAGGAGTTGGGGCTGCTGGCCGA
TAAAGACGACCAGGGCGTGTTATTACAGATTTTCACCGTGCCCGTAGGGG
ATCGACCAACGCTTTTTCTGGAGATCATTCAACGCATCGGTTGTGAGTCT
CCAGATCCCAATCATTCGGAACAAACGAAACAGAGGGGAGGTTGCGGTGG
GTTTGGGAAGGGAAATTTCGCCGCCCTTTTCAAATCCATAGAGGAGTATG
AAAAAACGCTGGATGTTTAGATGGCCAAAAGAAGACCCCATCTGGTCATG
CCCTTATCCTCTGCAGCCAGCGCCGCGCTTCCTCTGACGTTGTTCCTCCT
TCTTGCCGGGCCAGCCCTCTCGTACCTGTCACATGTGCCCCCGATTGTAA
GCAAATCACGCGTTTTTGCGGCTAAACAAAATCATCATAGCCAGCTCGTA
CGGCAACGTACCCCAACGGCTCTGACGTTCAGCACGGCAACCTCATCGGA
CGAGAGGGGCCACATCACTCGTACTGAACTCGTGGGAGCGGCCAAGTTTG
TACGACAGAACCCTAAATCAGACCGTTTCAAAGTCTTGAGCTTTCATCAC
GTGGAAATCTACTGTGGGGACGCCACTAACACCTATCGTCGTTTCCAGTT
GGGCCTGGGTATGAACCTGGTGGCCAAGTCGGACTTGTCTACTGGTAATC
CGCTTTTCGCAAGTTATTGCCTGCGGTCCCAGAGGCTGCAGATGGTCTTT
AGTGCACCGTACTCCATGAATAAGGTGGCAGCAGAAGAAGGGTCGTCGAT
GGGGAAGGGAGAGATTGTAGAGAGAAGAAGCAGCCCGAACCCAGGTTTTG
AGGCCTCGCACGCCACGCAGTTCTTCAACAGGCACGGAGTGGCTGTGCGG
GCCTTGGGGCTGGAAGTGGAGGACGCGAGACAAGCGTACCAGGAATGTGT
TGCTAACGGCGGACAAGGAGTGCTAGAGCCTGTCCGACTGGATCCCTCCC
CGGGCTTGGGGCGGGACGGGTACTTGGTGATGTCGGAGGTGCAGGCCTAC
GGAGACGTTGTCCTGCGCTTTGTCTCGAGACATGGGGGCTACGCGGGCAG
CTTCCTTCCGGGCTATCAGGAGGAGACAAGTGCGGCTTACACAACGGGTG
CCAAGGTGGAAAGGTCTCTTGACTATGGTCTCGAACGCATCGACCACGCG
GTAGGAAACGTCTGGGAGCTGAACGAGGCTGTGTCGTACTTGGAAAAAAT
GACGGGCTTCCACCCTTTTGCGGAATTCGTCGCGAAAGACGTGGGCACTG
TCGATTCTGGATTGAACTCCGTCGTCCTTGCCAACAACGCGGAAGATGTC
CTGATCCCCTTGAATGAGCCCACGTACGGGACCAAGCGGAAGTCTCAGAT
TCAAACCTACTTAGAGTGCAACAACGGCCCCGGATTGCAGCACTTGGCCT
TAGCCACGCGCGACATATTCACAACAATGCGAAAGATGCGGGCAGTCTCA
GAAATGGGCGGCTTCACATTCATGGCCCCGCCGCCTCCATCGTACTACCG
GGCCTTGCCGGAAAGACTGGGCGGGAGCTTGACGGCCTCGCAGCTGGCAC
AGATAGAGGAGTTGGGGCTGCTGGCCGATAAAGACGACCAGGGCGTGTTA
TTACAG
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Synonyms
Publications