rna6780, rna6780 (mRNA) Nannochloropsis gaditana

Overview
Namerna6780
Unique Namerna6780
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length609
Alignment locationCM002469.1:487219..487473 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100113g8.9966.mrna
Orig protein idgnl|cribi|Naga_100113g8.9966
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:487219..487473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100113g8gene6554Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6780rna6780-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23900.1cds6764Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6780 ID=rna6780|Name=rna6780|organism=Nannochloropsis gaditana|type=mRNA|length=609bp
ATGCATCTTCTAGCCGCACTCGTGGCCCTGCCCGCCATGTGCACTGCTTT
TGTCGTTCCGCTACCGTCAGCTCCGAAGCATGCCGTACGAATGATGGCTG
ATGGTGACGCAGCTGGTGCTGAGTGGCGGGGTGGTCAAGCGGCGTCAGCT
GTATCGAAGGATCTGAAAACGCTGCTGACGAACGAGAATGTCGCGTCGAT
TTTGCCTCACCGATACCCCTTCTTGCTGGTGGATAAAGTGATTGAAATGG
AGCCGGGGAAGAAAGCTGTGGGTATCAAGCAAATAACGGCAAATGAACCG
CAGTTTACAGGTCATTTCCCAGAGCGACCAATCATGCCCGGAGTCCTTAT
GGTGGAGGCCATGGCTCAGCTCTCAGGCGTGCTCTGCTTGCAGCCTCCTG
TCTCTGACGGCAAAGGTCTCTTCTTTTTTGCCGGTATCGATGGGGTCAAA
TTTCGAAAGCCTGTGGTGCCGGGGGACACTCTGGTCATGGAGGTGGAACT
GGTCAAGTTCATGGAGTCGTTTGGCATAGCCAAGCTGAAGGGGAAGGCGT
ACGTCGATGGCGACGTGGCCGTCGAAATCAAGGAGATGACTTTTGCCCTG
TCCAAGTGA
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protein sequence of rna6780

>rna6780-protein ID=rna6780-protein|Name=rna6780|organism=Nannochloropsis gaditana|type=polypeptide|length=68bp
MRLATCSTKFGTPANDLRIGRESFPQEQAAVDFKWPPPHVEQILKPYGEK
RMRAPQISETCVAIFSFI
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mRNA from alignment at CM002469.1:487219..487473+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6780 ID=rna6780|Name=rna6780|organism=Nannochloropsis gaditana|type=mRNA|length=255bp|location=Sequence derived from alignment at CM002469.1:487219..487473+ (Nannochloropsis gaditana)
ATGCGTCTAGCCACATGTTCAACGAAGTTCGGTACGCCCGCCAATGATCT
GAGGATAGGGCGAGAGTCCTTTCCACAAGAACAAGCAGCGGTAGACTTCA
AATGGCCACCACCACATGTTGGTAAGTTTGTTTTGATGACCGTTCGCCAT
TTTCGTTGACAAACCTTAGAACAAATACTAAAACCCTATGGCGAAAAGCG
AATGCGAGCACCTCAGATTTCTGAAACGTGCGTAGCTATATTCTCGTTCA
TCTAA
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Coding sequence (CDS) from alignment at CM002469.1:487219..487473+

>rna6780 ID=rna6780|Name=rna6780|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at CM002469.1:487219..487473+ (Nannochloropsis gaditana)
ATGCGTCTAGCCACATGTTCAACGAAGTTCGGTACGCCCGCCAATGATCT
GAGGATAGGGCGAGAGTCCTTTCCACAAGAACAAGCAGCGGTAGACTTCA
AATGGCCACCACCACATGTTGAACAAATACTAAAACCCTATGGCGAAAAG
CGAATGCGAGCACCTCAGATTTCTGAAACGTGCGTAGCTATATTCTCGTT
CATCTAAATGCGTCTAGCCACATGTTCAACGAAGTTCGGTACGCCCGCCA
ATGATCTGAGGATAGGGCGAGAGTCCTTTCCACAAGAACAAGCAGCGGTA
GACTTCAAATGGCCACCACCACATGTTGAACAAATACTAAAACCCTATGG
CGAAAAGCGAATGCGAGCACCTCAGATTTCTGAAACGTGCGTAGCTATAT
TCTCGTTCATCTAA
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Synonyms
Publications