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Properties
| Property Name | Value |
|---|
| Product | auxin efflux carrier-like protein |
| Orig transcript id | gnl|cribi|Naga_100082g19.9352.mrna |
| Orig protein id | gnl|cribi|Naga_100082g19.9352 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:429217..431516 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6756 ID=rna6756|Name=rna6756|organism=Nannochloropsis gaditana|type=mRNA|length=1904bp
CTTGCATGGTGATTCCCGACGAGCAGCTCATTACCGCAATAGAGTGGCGC
ATCCATAATCCCTTGAATTCTTACCTCGTCATTCATCGATACTGTACCCG
TACGTACGTCATGTTCAGGAGCATATACCAAGGCACAAAGGCAACAAAAA
CCATCGCTGCTCAACTTACTTGATACAACTGCTGCAATTTTCGCCCAACT
TTATCTGATAACGCGATGGCTTTCGCGTGGATGGGCTTAGTGCTCTTATT
CTTGCCTGGGTTGTCTCTTGCGGGGTCCTCTCGATGGAGCCTGCGAGATG
TTATTATTTTATGGCATCTTTGAACAGCAAGGAAGACAAGATGCTCCAGT
GTCGATGTCAAGCTTCGTGCCGTCCCCAGCGCATCAACAGAGGATCCCAC
GGAGTCCACTATGCCGAGATCGGTTTGTTGTAGAAAACAAAGTCATGCCT
TTTGCCAAATTCGCAGCTCAGCGTATTATTGACGTCCATGCCCGAACGCA
TCTGAAAAGTGGTATAATGTATGCCGAGCAATCTTCTGCCCTGCTCTCCG
TCCGCGGCGGGTCTGTAGCTAATCTTGATCCAGTTGTGGTAAAGGCCTCC
CTGACCGCCGTAGGGGAGCTATTAGTTGCGTGTGGTATTGGCGCTTGGTT
TACGCGTCGAGGCATTCTAGGACGCGAAGCAATTGCGAACCTCAGCTCCA
TTGTCTACCATATCTTGCTGCCGTCTCTACTCGTCGTCAACGTGGCCAAG
ACGGTTTACACTACGCCCCTGAGGACCCTACTCCCTTTGCCTCTCTTCGG
CACCATGCAGATCCTACTCTGTAGCTGCATTGCCTGGGTTGTGACCTTCT
TGATGGGCGCAGATGTCAACAGCGCAAAAGGTCGACAATTAAGAGTCCTT
CAAACTTTCGGAAACGGTGGTGTCGCTCCGATCTTGTTCGCGACCGTCTT
GCTCCGCAATCACCCCGACCCAAGCGTCCTGCCTTTGGCCATATCCTACA
TCAGCTTTTACCTCCTGGGATGGACACCTATATTCTGGACCTATGGATAC
AGCCTTCTAGTTCCCGCGGAAGCGCCGACTGCGCAATCCATCGCGGAAAA
GGAATCTGTGGTCACTTTGGCCGACAGAATCAAATATTTCATACGTCATC
CTCCTGCTACAATCAAACGCATTTTGTCACCGCCAATTGTGGGAAGCTTG
GGCGGGCTTTGCGTAGGGGTGAGTCCGCTGGCCAAGCTTTTTTTGGGCCC
TAGAGCCCCTCTGGGAATTCTCACGAACGCCGTGCAGACCATCGGTTCAG
CCTACACGAGCATGGGCCTTTTGGTCCTGGCCGGCAGCCTGGCCTTGCCC
TTGCCGACGCCGTCGCCGTTGGAGGAGGTCTCAGGGGCTGAGAGTAAAAG
CATCCACCCTTATCTTCAGATAGCCAGTGTCTGCCTTGTTCGATTTTGTC
TTTGCCCCGCGCTCTGCTTGTCCATCATCTTGCGTGCCATGTCCACTGGG
TGGGTGAAGCTCGACAGGCTCATGGTCTTTGTCCTCTTCCTCCAGTCTTG
CATGCCCAGTGCACAGAATTCTGTCTTGATGGTGCAGTTGAGTGGAAGAC
AAGCTGATGCTACTAGGCTAGCACGGATGCTGCTTTACATTTATTCGCTT
TCATGTATTCCCATCTCAATATTGCTTACGCTTTTCTTACAAAATTTTAG
CCTCTAAGCGAAGTTTAAGCTATTTATGCAATCTCAAACTTCTTGGAAAA
GAAACATCATATGCTAATTACCGAAAGTAATCCGGATTTCTGTGAAGCAG
CTCTTACGTCTTCACAAAACTTTTTTTTTTTAAAGATATACATAAAGCAG
TACATCAGCTACCACTCCTAGAAAGTACAACCGTGCAAACATGATGCCAC
ATCA back to topprotein sequence of rna6756 >rna6756-protein ID=rna6756-protein|Name=rna6756|organism=Nannochloropsis gaditana|type=polypeptide|length=483bp
MFCKFSMPSIAQSEMLLFYGIFEQQGRQDAPVSMSSFVPSPAHQQRIPRS
PLCRDRFVVENKVMPFAKFAAQRIIDVHARTHLKSGIMYAEQSSALLSVR
GGSVANLDPVVVKASLTAVGELLVACGIGAWFTRRGILGREAIANLSSIV
YHILLPSLLVVNVAKTVYTTPLRTLLPLPLFGTMQILLCSCIAWVVTFLM
GADVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHPDPSVLPLAISYIS
FYLLGWTPIFWTYGYSLLVPAEAPTAQSIAEKESVVTLADRIKYFIRHPP
ATIKRILSPPIVGSLGGLCVGVSPLAKLFLGPRAPLGILTNAVQTIGSAY
TSMGLLVLAGSLALPLPTPSPLEEVSGAESKSIHPYLQIASVCLVRFCLC
PALCLSIILRAMSTGWVKLDRLMVFVLFLQSCMPSAQNSVLMVQLSGRQA
DATRLARMLLYIYSLSCIPISILLTLFLQNFSL back to topmRNA from alignment at CM002469.1:429217..431516- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6756 ID=rna6756|Name=rna6756|organism=Nannochloropsis gaditana|type=mRNA|length=2300bp|location=Sequence derived from alignment at CM002469.1:429217..431516- (Nannochloropsis gaditana)
CTTGCATGGTGATTCCCGACGAGCAGCTCATTACCGCAATAGAGTGGCGC
ATCCATAATCCCTTGAATTCTTACCTCGTCATTCATCGATACTGTACCCG
TACGTACGTCATGTTCAGGAGCATATACCAAGGCACAAAGGCAACAAAAA
CCATCGCTGCTCAACTTACTTGATACAACTGCTGCAATTTTCGCCCAACT
TTATCTGATAACGCGATGGCTTTCGCGTGGATGGGCTTAGTGCTCTTATT
CTTGCCTGGGTTGTCTCTTGCGGGGTCCTCTCGATGGAGCCTGGTAAGTG
CTTTTGCTAGCTGAGATGAACTGACGGAAGTGCGGAGCTCTATTGTGAGC
GCCGGAAAATCATACACGAGTGTCTTAATACAGATTGTTCTCCCACTCCG
AGGAATTTGGTGGTAATTTAGCATAAAATGTGACGAGGGGTTTGCTGAGG
CCTTTCTGCCGTACCAGTCTTCACGACTCCGCTACAATCAACTCGGTTGA
CTGCTCTTGCTTGATGTAATCAAGGTCTCACTGGAATGTTTTGCAAATTT
TCAATGCCCTCCATTGCTCAAAGCGAGATGTTATTATTTTATGGCATCTT
TGAACAGCAAGGAAGACAAGATGCTCCAGTGTCGATGTCAAGCTTCGTGC
CGTCCCCAGCGCATCAACAGAGGATCCCACGGAGTCCACTATGCCGAGAT
CGGTTTGTTGTAGAAAACAAAGTCATGCCTTTTGCCAAATTCGCAGCTCA
GCGTATTATTGACGTCCATGCCCGAACGCATCTGAAAAGTGGTATAATGT
ATGCCGAGCAATCTTCTGCCCTGCTCTCCGTCCGCGGCGGGTCTGTAGCT
AATCTTGATCCAGTTGTGGTAAAGGCCTCCCTGACCGCCGTAGGGGAGCT
ATTAGTTGCGTGTGGTATTGGCGCTTGGTTTACGCGTCGAGGCATTCTAG
GACGCGAAGCAATTGCGAACCTCAGCTCCATTGTCTACCATATCTTGCTG
CCGTCTCTACTCGTCGTCAACGTGGCCAAGACGGTTTACACTACGCCCCT
GAGGACCCTACTCCCTTTGCCTCTCTTCGGCACCATGCAGATCCTACTCT
GTAGCTGCATTGCCTGGGTTGTGACCTTCTTGATGGGCGCAGATGTCAAC
AGGTGAGCGCCCAGGCGTTGCGCGGACTTCTTTCTCTCTGTGGGTGCTCG
GACTCTGACGAGTATTCTGTAATTTAATCAGTCTTTCACATCGCTTGCGG
GTAATCTCAACCAAACAGCGCAAAAGGTCGACAATTAAGAGTCCTTCAAA
CTTTCGGAAACGGTGGTGTCGCTCCGATCTTGTTCGCGACCGTCTTGCTC
CGCAATCACCCCGACCCAAGCGTCCTGCCTTTGGCCATATCCTACATCAG
CTTTTACCTCCTGGGATGGACACCTATATTCTGGACCTATGGATACAGCC
TTCTAGTTCCCGCGGAAGCGCCGACTGCGCAATCCATCGCGGAAAAGGAA
TCTGTGGTCACTTTGGCCGACAGAATCAAATATTTCATACGTCATCCTCC
TGCTACAATCAAACGCATTTTGTCACCGCCAATTGTGGGAAGCTTGGGCG
GGCTTTGCGTAGGGGTGAGTCCGCTGGCCAAGCTTTTTTTGGGCCCTAGA
GCCCCTCTGGGAATTCTCACGAACGCCGTGCAGACCATCGGTTCAGCCTA
CACGAGCATGGGCCTTTTGGTCCTGGCCGGCAGCCTGGCCTTGCCCTTGC
CGACGCCGTCGCCGTTGGAGGAGGTCTCAGGGGCTGAGAGTAAAAGCATC
CACCCTTATCTTCAGATAGCCAGTGTCTGCCTTGTTCGATTTTGTCTTTG
CCCCGCGCTCTGCTTGTCCATCATCTTGCGTGCCATGTCCACTGGGTGGG
TGAAGCTCGACAGGCTCATGGTCTTTGTCCTCTTCCTCCAGTCTTGCATG
CCCAGTGCACAGAATTCTGTCTTGATGGTGCAGTTGAGTGGAAGACAAGC
TGATGCTACTAGGCTAGCACGGATGCTGCTTTACATTTATTCGCTTTCAT
GTATTCCCATCTCAATATTGCTTACGCTTTTCTTACAAAATTTTAGCCTC
TAAGCGAAGTTTAAGCTATTTATGCAATCTCAAACTTCTTGGAAAAGAAA
CATCATATGCTAATTACCGAAAGTAATCCGGATTTCTGTGAAGCAGCTCT
TACGTCTTCACAAAACTTTTTTTTTTTAAAGATATACATAAAGCAGTACA
TCAGCTACCACTCCTAGAAAGTACAACCGTGCAAACATGATGCCACATCA
back to topCoding sequence (CDS) from alignment at CM002469.1:429217..431516- >rna6756 ID=rna6756|Name=rna6756|organism=Nannochloropsis gaditana|type=CDS|length=2904bp|location=Sequence derived from alignment at CM002469.1:429217..431516- (Nannochloropsis gaditana)
CGCAAAAGGTCGACAATTAAGAGTCCTTCAAACTTTCGGAAACGGTGGTG
TCGCTCCGATCTTGTTCGCGACCGTCTTGCTCCGCAATCACCCCGACCCA
AGCGTCCTGCCTTTGGCCATATCCTACATCAGCTTTTACCTCCTGGGATG
GACACCTATATTCTGGACCTATGGATACAGCCTTCTAGTTCCCGCGGAAG
CGCCGACTGCGCAATCCATCGCGGAAAAGGAATCTGTGGTCACTTTGGCC
GACAGAATCAAATATTTCATACGTCATCCTCCTGCTACAATCAAACGCAT
TTTGTCACCGCCAATTGTGGGAAGCTTGGGCGGGCTTTGCGTAGGGGTGA
GTCCGCTGGCCAAGCTTTTTTTGGGCCCTAGAGCCCCTCTGGGAATTCTC
ACGAACGCCGTGCAGACCATCGGTTCAGCCTACACGAGCATGGGCCTTTT
GGTCCTGGCCGGCAGCCTGGCCTTGCCCTTGCCGACGCCGTCGCCGTTGG
AGGAGGTCTCAGGGGCTGAGAGTAAAAGCATCCACCCTTATCTTCAGATA
GCCAGTGTCTGCCTTGTTCGATTTTGTCTTTGCCCCGCGCTCTGCTTGTC
CATCATCTTGCGTGCCATGTCCACTGGGTGGGTGAAGCTCGACAGGCTCA
TGGTCTTTGTCCTCTTCCTCCAGTCTTGCATGCCCAGTGCACAGAATTCT
GTCTTGATGGTGCAGTTGAGTGGAAGACAAGCTGATGCTACTAGGCTAGC
ACGGATGCTGCTTTACATTTATTCGCTTTCATGTATTCCCATCTCAATAT
TGCTTACGCTTTTCTTACAAAATTTTAGCCTCTAAATGTTTTGCAAATTT
TCAATGCCCTCCATTGCTCAAAGCGAGATGTTATTATTTTATGGCATCTT
TGAACAGCAAGGAAGACAAGATGCTCCAGTGTCGATGTCAAGCTTCGTGC
CGTCCCCAGCGCATCAACAGAGGATCCCACGGAGTCCACTATGCCGAGAT
CGGTTTGTTGTAGAAAACAAAGTCATGCCTTTTGCCAAATTCGCAGCTCA
GCGTATTATTGACGTCCATGCCCGAACGCATCTGAAAAGTGGTATAATGT
ATGCCGAGCAATCTTCTGCCCTGCTCTCCGTCCGCGGCGGGTCTGTAGCT
AATCTTGATCCAGTTGTGGTAAAGGCCTCCCTGACCGCCGTAGGGGAGCT
ATTAGTTGCGTGTGGTATTGGCGCTTGGTTTACGCGTCGAGGCATTCTAG
GACGCGAAGCAATTGCGAACCTCAGCTCCATTGTCTACCATATCTTGCTG
CCGTCTCTACTCGTCGTCAACGTGGCCAAGACGGTTTACACTACGCCCCT
GAGGACCCTACTCCCTTTGCCTCTCTTCGGCACCATGCAGATCCTACTCT
GTAGCTGCATTGCCTGGGTTGTGACCTTCTTGATGGGCGCAGATGTCAAC
AGCGCAAAAGGTCGACAATTAAGAGTCCTTCAAACTTTCGGAAACGGTGG
TGTCGCTCCGATCTTGTTCGCGACCGTCTTGCTCCGCAATCACCCCGACC
CAAGCGTCCTGCCTTTGGCCATATCCTACATCAGCTTTTACCTCCTGGGA
TGGACACCTATATTCTGGACCTATGGATACAGCCTTCTAGTTCCCGCGGA
AGCGCCGACTGCGCAATCCATCGCGGAAAAGGAATCTGTGGTCACTTTGG
CCGACAGAATCAAATATTTCATACGTCATCCTCCTGCTACAATCAAACGC
ATTTTGTCACCGCCAATTGTGGGAAGCTTGGGCGGGCTTTGCGTAGGGGT
GAGTCCGCTGGCCAAGCTTTTTTTGGGCCCTAGAGCCCCTCTGGGAATTC
TCACGAACGCCGTGCAGACCATCGGTTCAGCCTACACGAGCATGGGCCTT
TTGGTCCTGGCCGGCAGCCTGGCCTTGCCCTTGCCGACGCCGTCGCCGTT
GGAGGAGGTCTCAGGGGCTGAGAGTAAAAGCATCCACCCTTATCTTCAGA
TAGCCAGTGTCTGCCTTGTTCGATTTTGTCTTTGCCCCGCGCTCTGCTTG
TCCATCATCTTGCGTGCCATGTCCACTGGGTGGGTGAAGCTCGACAGGCT
CATGGTCTTTGTCCTCTTCCTCCAGTCTTGCATGCCCAGTGCACAGAATT
CTGTCTTGATGGTGCAGTTGAGTGGAAGACAAGCTGATGCTACTAGGCTA
GCACGGATGCTGCTTTACATTTATTCGCTTTCATGTATTCCCATCTCAAT
ATTGCTTACGCTTTTCTTACAAAATTTTAGCCTCTAAATGTTTTGCAAAT
TTTCAATGCCCTCCATTGCTCAAAGCGAGATGTTATTATTTTATGGCATC
TTTGAACAGCAAGGAAGACAAGATGCTCCAGTGTCGATGTCAAGCTTCGT
GCCGTCCCCAGCGCATCAACAGAGGATCCCACGGAGTCCACTATGCCGAG
ATCGGTTTGTTGTAGAAAACAAAGTCATGCCTTTTGCCAAATTCGCAGCT
CAGCGTATTATTGACGTCCATGCCCGAACGCATCTGAAAAGTGGTATAAT
GTATGCCGAGCAATCTTCTGCCCTGCTCTCCGTCCGCGGCGGGTCTGTAG
CTAATCTTGATCCAGTTGTGGTAAAGGCCTCCCTGACCGCCGTAGGGGAG
CTATTAGTTGCGTGTGGTATTGGCGCTTGGTTTACGCGTCGAGGCATTCT
AGGACGCGAAGCAATTGCGAACCTCAGCTCCATTGTCTACCATATCTTGC
TGCCGTCTCTACTCGTCGTCAACGTGGCCAAGACGGTTTACACTACGCCC
CTGAGGACCCTACTCCCTTTGCCTCTCTTCGGCACCATGCAGATCCTACT
CTGTAGCTGCATTGCCTGGGTTGTGACCTTCTTGATGGGCGCAGATGTCA
ACAG back to top
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