rna6755, rna6755 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6755
Unique Name	rna6755
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1250
Alignment location	CM002469.1:429217..431516 -

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Properties


Property Name	Value
Product	auxin efflux carrier-like protein
Orig transcript id	gnl\|cribi\|Naga_100082g19.9351.mrna
Orig protein id	gnl\|cribi\|Naga_100082g19.9351
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:429217..431516 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100082g19	gene6531	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6755	rna6755-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23919.1	cds6739	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:429217..431516-
coding sequence from alignment at CM002469.1:429217..431516-

mRNA sequence

>rna6755 ID=rna6755|Name=rna6755|organism=Nannochloropsis gaditana|type=mRNA|length=1250bp
CTAGGTATGGCACAAGCAAGGGATGTTTCGCATCGTCCGCTGGGGTTGCT
GCTGACCACCGCTGTGAGCGTCTGTTCCACTATGATTCTCATGTCATCGA
GAAGCGTGAGGGCAAGCAGGGGCGCATTTGTTAAACAAGGCCTCTGGGGC
ATGCCGCATTCTAGTCACACCGGATCCCGCACGCCTCATAAGAAGGGGAT
CGAGAAGTTGAGGTTTTCAGTCTTTCATGGGAACAATTACAGAGGAGCTT
CTTTCCCCTGGTCGACGCGCTCCGGCGTGTTGGCGTCTTCACGAGCGTCA
CCTCGACTTGTGGCACGAGCCCCGGCCATGGCATCACCATCCGATGAGCA
CGCTGAGGAAGGAAAGAGAAGGAGCATGCTGACAGTCCAGGACTTTGCAG
CCCAGCTGGAGCCATTTGGGGTCACGGGCGTGCGTTTCGGGGAGGATGGG
GAGGACGACGAGCTGGCAGTGTGCTGCCCGGAGTCGAGGAGACTGATGGA
CTGCACCGTGGACATGTACGCCACCGTGAATAGCACCAATTACTGCGTGG
CCTTGCCCATCTTCAGTCCGGTGGCGCTGTGTTACCACAAGGGGGCGCGC
CTCATCCCCGTTGAGAATGAGTGCGAGCTAATGGACAGGCTCTACGACTT
CCTGGCGCCCACCCTGGAGCAGGAGGACCTTTTCCTCATCCGCAGCCCCG
TGTGCTTGACCCTGGACGGGGACCTGGGCGACCTGGGCGAGGAGGGGGAG
TTCTCGGAGGAGGAGCTGGCGGGCTGGGAGGAATTTGATAGCGAGGACGA
TCCCTGGGAGGACGGAGATGAGGAGGAAGAGGAGGAGGAGGAGGATAGCA
TGGCCGGGACCTTCGATGATGAGGTCGAAAAGATGACAAATCCCAAGTAC
TGGGACGACGAGCAGGCAAGCGATGTACGAGAGGCGTACGGAGAAGACTG
GGAAAAAATTGCAGCTTTTACATATGATGGCGTAGACTATACCATGGTCA
AAATTCTCGAGCCTGTCCTTGTGCTCGCGAAGGAGGATCCGGACTTTAAA
GGCATCACCAAGTGGGTACTACCAAGCGAGGATGAGGCCGAGGAAATAGC
GCCAATCATGGAGGGTATCATCAAGATAAAGCTTGGTATTGATGATCAAG
ATGCAGAAGATGAAACGCGGGGGGGGGACGATGAAGAGGACAGAATTTGA
AGGCAACAGAAAGTACAGACAGATGACGAGAGACTGTTATAATTATTTTT

protein sequence of rna6755

>rna6755-protein ID=rna6755-protein|Name=rna6755|organism=Nannochloropsis gaditana|type=polypeptide|length=469bp
MLLFYGIFEQQGRQDAPVSMSSFVPSPAHQQRIPRSPLCRDRFVVENKVM
PFAKFAAQRIIDVHARTHLKSGIMYAEQSSALLSVRGGSVANLDPVVVKA
SLTAVGELLVACGIGAWFTRRGILGREAIANLSSIVYHILLPSLLVVNVA
KTVYTTPLRTLLPLPLFGTMQILLCSCIAWVVTFLMGADVNSAKGRQLRV
LQTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISFYLLGWTPIFWTYG
YSLLVPAEAPTAQSIAEKESVVTLADRIKYFIRHPPATIKRILSPPIVGS
LGGLCVGVSPLAKLFLGPRAPLGILTNAVQTIGSAYTSMGLLVLAGSLAL
PLPTPSPLEEVSGAESKSIHPYLQIASVCLVRFCLCPALCLSIILRAMST
GWVKLDRLMVFVLFLQSCMPSAQNSVLMVQLSGRQADATRLARMLLYIYS
LSCIPISILLTLFLQNFSL

mRNA from alignment at CM002469.1:429217..431516-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6755 ID=rna6755|Name=rna6755|organism=Nannochloropsis gaditana|type=mRNA|length=2300bp|location=Sequence derived from alignment at CM002469.1:429217..431516- (Nannochloropsis gaditana)
CTTGCATGGTGATTCCCGACGAGCAGCTCATTACCGCAATAGAGTGGCGC
ATCCATAATCCCTTGAATTCTTACCTCGTCATTCATCGATACTGTACCCG
TACGTACGTCATGTTCAGGAGCATATACCAAGGCACAAAGGCAACAAAAA
CCATCGCTGCTCAACTTACTTGATACAACTGCTGCAATTTTCGCCCAACT
TTATCTGATAACGCGATGGCTTTCGCGTGGATGGGCTTAGTGCTCTTATT
CTTGCCTGGGTTGTCTCTTGCGGGGTCCTCTCGATGGAGCCTGGTAAGTG
CTTTTGCTAGCTGAGATGAACTGACGGAAGTGCGGAGCTCTATTGTGAGC
GCCGGAAAATCATACACGAGTGTCTTAATACAGATTGTTCTCCCACTCCG
AGGAATTTGGTGGTAATTTAGCATAAAATGTGACGAGGGGTTTGCTGAGG
CCTTTCTGCCGTACCAGTCTTCACGACTCCGCTACAATCAACTCGGTTGA
CTGCTCTTGCTTGATGTAATCAAGGTCTCACTGGAATGTTTTGCAAATTT
TCAATGCCCTCCATTGCTCAAAGCGAGATGTTATTATTTTATGGCATCTT
TGAACAGCAAGGAAGACAAGATGCTCCAGTGTCGATGTCAAGCTTCGTGC
CGTCCCCAGCGCATCAACAGAGGATCCCACGGAGTCCACTATGCCGAGAT
CGGTTTGTTGTAGAAAACAAAGTCATGCCTTTTGCCAAATTCGCAGCTCA
GCGTATTATTGACGTCCATGCCCGAACGCATCTGAAAAGTGGTATAATGT
ATGCCGAGCAATCTTCTGCCCTGCTCTCCGTCCGCGGCGGGTCTGTAGCT
AATCTTGATCCAGTTGTGGTAAAGGCCTCCCTGACCGCCGTAGGGGAGCT
ATTAGTTGCGTGTGGTATTGGCGCTTGGTTTACGCGTCGAGGCATTCTAG
GACGCGAAGCAATTGCGAACCTCAGCTCCATTGTCTACCATATCTTGCTG
CCGTCTCTACTCGTCGTCAACGTGGCCAAGACGGTTTACACTACGCCCCT
GAGGACCCTACTCCCTTTGCCTCTCTTCGGCACCATGCAGATCCTACTCT
GTAGCTGCATTGCCTGGGTTGTGACCTTCTTGATGGGCGCAGATGTCAAC
AGGTGAGCGCCCAGGCGTTGCGCGGACTTCTTTCTCTCTGTGGGTGCTCG
GACTCTGACGAGTATTCTGTAATTTAATCAGTCTTTCACATCGCTTGCGG
GTAATCTCAACCAAACAGCGCAAAAGGTCGACAATTAAGAGTCCTTCAAA
CTTTCGGAAACGGTGGTGTCGCTCCGATCTTGTTCGCGACCGTCTTGCTC
CGCAATCACCCCGACCCAAGCGTCCTGCCTTTGGCCATATCCTACATCAG
CTTTTACCTCCTGGGATGGACACCTATATTCTGGACCTATGGATACAGCC
TTCTAGTTCCCGCGGAAGCGCCGACTGCGCAATCCATCGCGGAAAAGGAA
TCTGTGGTCACTTTGGCCGACAGAATCAAATATTTCATACGTCATCCTCC
TGCTACAATCAAACGCATTTTGTCACCGCCAATTGTGGGAAGCTTGGGCG
GGCTTTGCGTAGGGGTGAGTCCGCTGGCCAAGCTTTTTTTGGGCCCTAGA
GCCCCTCTGGGAATTCTCACGAACGCCGTGCAGACCATCGGTTCAGCCTA
CACGAGCATGGGCCTTTTGGTCCTGGCCGGCAGCCTGGCCTTGCCCTTGC
CGACGCCGTCGCCGTTGGAGGAGGTCTCAGGGGCTGAGAGTAAAAGCATC
CACCCTTATCTTCAGATAGCCAGTGTCTGCCTTGTTCGATTTTGTCTTTG
CCCCGCGCTCTGCTTGTCCATCATCTTGCGTGCCATGTCCACTGGGTGGG
TGAAGCTCGACAGGCTCATGGTCTTTGTCCTCTTCCTCCAGTCTTGCATG
CCCAGTGCACAGAATTCTGTCTTGATGGTGCAGTTGAGTGGAAGACAAGC
TGATGCTACTAGGCTAGCACGGATGCTGCTTTACATTTATTCGCTTTCAT
GTATTCCCATCTCAATATTGCTTACGCTTTTCTTACAAAATTTTAGCCTC
TAAGCGAAGTTTAAGCTATTTATGCAATCTCAAACTTCTTGGAAAAGAAA
CATCATATGCTAATTACCGAAAGTAATCCGGATTTCTGTGAAGCAGCTCT
TACGTCTTCACAAAACTTTTTTTTTTTAAAGATATACATAAAGCAGTACA
TCAGCTACCACTCCTAGAAAGTACAACCGTGCAAACATGATGCCACATCA

Coding sequence (CDS) from alignment at CM002469.1:429217..431516-

>rna6755 ID=rna6755|Name=rna6755|organism=Nannochloropsis gaditana|type=CDS|length=2820bp|location=Sequence derived from alignment at CM002469.1:429217..431516- (Nannochloropsis gaditana)
CGCAAAAGGTCGACAATTAAGAGTCCTTCAAACTTTCGGAAACGGTGGTG
TCGCTCCGATCTTGTTCGCGACCGTCTTGCTCCGCAATCACCCCGACCCA
AGCGTCCTGCCTTTGGCCATATCCTACATCAGCTTTTACCTCCTGGGATG
GACACCTATATTCTGGACCTATGGATACAGCCTTCTAGTTCCCGCGGAAG
CGCCGACTGCGCAATCCATCGCGGAAAAGGAATCTGTGGTCACTTTGGCC
GACAGAATCAAATATTTCATACGTCATCCTCCTGCTACAATCAAACGCAT
TTTGTCACCGCCAATTGTGGGAAGCTTGGGCGGGCTTTGCGTAGGGGTGA
GTCCGCTGGCCAAGCTTTTTTTGGGCCCTAGAGCCCCTCTGGGAATTCTC
ACGAACGCCGTGCAGACCATCGGTTCAGCCTACACGAGCATGGGCCTTTT
GGTCCTGGCCGGCAGCCTGGCCTTGCCCTTGCCGACGCCGTCGCCGTTGG
AGGAGGTCTCAGGGGCTGAGAGTAAAAGCATCCACCCTTATCTTCAGATA
GCCAGTGTCTGCCTTGTTCGATTTTGTCTTTGCCCCGCGCTCTGCTTGTC
CATCATCTTGCGTGCCATGTCCACTGGGTGGGTGAAGCTCGACAGGCTCA
TGGTCTTTGTCCTCTTCCTCCAGTCTTGCATGCCCAGTGCACAGAATTCT
GTCTTGATGGTGCAGTTGAGTGGAAGACAAGCTGATGCTACTAGGCTAGC
ACGGATGCTGCTTTACATTTATTCGCTTTCATGTATTCCCATCTCAATAT
TGCTTACGCTTTTCTTACAAAATTTTAGCCTCTAAATGTTATTATTTTAT
GGCATCTTTGAACAGCAAGGAAGACAAGATGCTCCAGTGTCGATGTCAAG
CTTCGTGCCGTCCCCAGCGCATCAACAGAGGATCCCACGGAGTCCACTAT
GCCGAGATCGGTTTGTTGTAGAAAACAAAGTCATGCCTTTTGCCAAATTC
GCAGCTCAGCGTATTATTGACGTCCATGCCCGAACGCATCTGAAAAGTGG
TATAATGTATGCCGAGCAATCTTCTGCCCTGCTCTCCGTCCGCGGCGGGT
CTGTAGCTAATCTTGATCCAGTTGTGGTAAAGGCCTCCCTGACCGCCGTA
GGGGAGCTATTAGTTGCGTGTGGTATTGGCGCTTGGTTTACGCGTCGAGG
CATTCTAGGACGCGAAGCAATTGCGAACCTCAGCTCCATTGTCTACCATA
TCTTGCTGCCGTCTCTACTCGTCGTCAACGTGGCCAAGACGGTTTACACT
ACGCCCCTGAGGACCCTACTCCCTTTGCCTCTCTTCGGCACCATGCAGAT
CCTACTCTGTAGCTGCATTGCCTGGGTTGTGACCTTCTTGATGGGCGCAG
ATGTCAACAGCGCAAAAGGTCGACAATTAAGAGTCCTTCAAACTTTCGGA
AACGGTGGTGTCGCTCCGATCTTGTTCGCGACCGTCTTGCTCCGCAATCA
CCCCGACCCAAGCGTCCTGCCTTTGGCCATATCCTACATCAGCTTTTACC
TCCTGGGATGGACACCTATATTCTGGACCTATGGATACAGCCTTCTAGTT
CCCGCGGAAGCGCCGACTGCGCAATCCATCGCGGAAAAGGAATCTGTGGT
CACTTTGGCCGACAGAATCAAATATTTCATACGTCATCCTCCTGCTACAA
TCAAACGCATTTTGTCACCGCCAATTGTGGGAAGCTTGGGCGGGCTTTGC
GTAGGGGTGAGTCCGCTGGCCAAGCTTTTTTTGGGCCCTAGAGCCCCTCT
GGGAATTCTCACGAACGCCGTGCAGACCATCGGTTCAGCCTACACGAGCA
TGGGCCTTTTGGTCCTGGCCGGCAGCCTGGCCTTGCCCTTGCCGACGCCG
TCGCCGTTGGAGGAGGTCTCAGGGGCTGAGAGTAAAAGCATCCACCCTTA
TCTTCAGATAGCCAGTGTCTGCCTTGTTCGATTTTGTCTTTGCCCCGCGC
TCTGCTTGTCCATCATCTTGCGTGCCATGTCCACTGGGTGGGTGAAGCTC
GACAGGCTCATGGTCTTTGTCCTCTTCCTCCAGTCTTGCATGCCCAGTGC
ACAGAATTCTGTCTTGATGGTGCAGTTGAGTGGAAGACAAGCTGATGCTA
CTAGGCTAGCACGGATGCTGCTTTACATTTATTCGCTTTCATGTATTCCC
ATCTCAATATTGCTTACGCTTTTCTTACAAAATTTTAGCCTCTAAATGTT
ATTATTTTATGGCATCTTTGAACAGCAAGGAAGACAAGATGCTCCAGTGT
CGATGTCAAGCTTCGTGCCGTCCCCAGCGCATCAACAGAGGATCCCACGG
AGTCCACTATGCCGAGATCGGTTTGTTGTAGAAAACAAAGTCATGCCTTT
TGCCAAATTCGCAGCTCAGCGTATTATTGACGTCCATGCCCGAACGCATC
TGAAAAGTGGTATAATGTATGCCGAGCAATCTTCTGCCCTGCTCTCCGTC
CGCGGCGGGTCTGTAGCTAATCTTGATCCAGTTGTGGTAAAGGCCTCCCT
GACCGCCGTAGGGGAGCTATTAGTTGCGTGTGGTATTGGCGCTTGGTTTA
CGCGTCGAGGCATTCTAGGACGCGAAGCAATTGCGAACCTCAGCTCCATT
GTCTACCATATCTTGCTGCCGTCTCTACTCGTCGTCAACGTGGCCAAGAC
GGTTTACACTACGCCCCTGAGGACCCTACTCCCTTTGCCTCTCTTCGGCA
CCATGCAGATCCTACTCTGTAGCTGCATTGCCTGGGTTGTGACCTTCTTG
ATGGGCGCAGATGTCAACAG

Synonyms

Publications