rna675, rna675 (mRNA) Nannochloropsis gaditana

Overview
Namerna675
Unique Namerna675
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2744
Alignment locationCM002456.1:139358..143059 +

Link to JBrowse

Properties
Property NameValue
Productkinesin family member 2c
Orig transcript idgnl|cribi|Naga_100379g4.1019.mrna
Orig protein idgnl|cribi|Naga_100379g4.1019
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:139358..143059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100379g4gene648Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna675rna675-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29996.1cds675Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna675 ID=rna675|Name=rna675|organism=Nannochloropsis gaditana|type=mRNA|length=2744bp
ACTTTATAAAAGTGGCATAGTTTTCAATGCATAGCTGTGCAGTCTTCACG
CTCAAACCTTACTGTGACCTCCCTGGTACAATATCTTTCTTATGCTTTCC
TTGGTCAGGGATCCGGCTTCCGGGGGTGTTGTGGATATCATTATGCCGCG
TACATCCTCAGCACCTCACCAAGTAGAGGACGAGTCGAAGCAGCCATTGA
TGCCTGCCCAGGATAACAAGGTTAAAGACAATGTCATAGAGTCGCAGGCC
ATGTCAGAAGAGGAAACTGCGTCGGCTGGTCATAGCAACGCTGAAAGAAA
TAAAAGTCATTTATCAGAAGAGCACGGTGACAAGAAGGTCTCAGAGGGGC
ATCGCAAGCATCGCCGATACCTCACAGCGGGTGCGCAATGCTGCTCTCAA
ACATTTACGATCCTGCAAAATCTTCTAGCTGTTCCCATGACGGAAGCTCT
TGGTACCCTCACCCTTACGCTGGTAGTTGGTCTGCTCTCCCGTCCCGCCG
CAGGCGTAGACAGCCTTACGGCCGCCATTGGAGTCGCCGCCGTCTTATTG
GCCATGATCAACACAGGCGCTCCGATATCGGGCGCGCATTACAACCCGGC
GGTGACCTTCGCATTGCTTCTCATCGGACGAGTCTCCCCTTTCCGGGCCC
TGGTTTACATAGCCAGCCAAACCGTCGGGGCCATTGGGGGGGCCTACCTG
GCCCGAGGTCTGGCTGCCTCTGATCAACTAGCAGATCCATTCTTGCCGGA
GGGAGTTACCGGGGAGCTAGCCCTGGTCGAGATCAGCTTTACATACGCCT
TGGTCATGGTGGTGATCCACACCGCTTTTGCCCGAGCACAGCAACCCAAT
GCCTATGCGGGCGTGGCGATATGTGCGACGTTGGTGACAGGGGCCTCTCT
GGGGGCGGTCATGAATCCGGCGGTGTCTGCTGGGCTTTATGTGGCTGCCA
GGCACAAGGACGAGGGGGAGGGAGGGGGGGCAGGGGGAGGGGGAGGCGGG
GCTGTGGGTCCGTTGGATGTTGCCAATGGCAGGCGGTTTAATCGCGGCTT
GTGCATTTTACGTGGTCAATGCAGCAGAAGCCTCGTGCCCGTATGGAAGG
GCGTCGGCCGGTCCACACAGGAGGAGACCCTCCCAGGGAGAGAGAGCGCA
GAGGGAAGGAGGGAGAGAGGACCGAGAAGCCCTTCTTCCCGAGGCGACCT
CCTTCCCGCCCTATCCGGCTACCTCCCCACCTGCCTATGCGCGGACACTT
CTCCGGGTATCATGCCGTGCCAGGGCCTATGTGACGGAGTTCCAGGGAGC
TTTCCTCCTCACCCTAGTTCTCGCCCTCAGCAGCAGCTCCTCCACCCCTC
CCTCCCCCCTTACCTCGGCCGTTTCCAGCGGTCTTTTATTGGCCGGCCTT
GTCTTTGCCGGGGCCTACGTCAGCGGCGGCCACTTCAACCCAGCCGTTAC
CCTCGGGGTTTTTCTTTTCCGGCCTCGGAGGAAAAAAATTCCCCGGGCCC
TGGCCTACGTAACGGTGCAACTCCTCGCCGCTCTGTTCGCGGGGGGGCTG
GCTCGGTCCGCGCTCGGTCGCGGCCGTTGTAAGAAGGCCCTCCCTCACCG
CGGGGTCTCCCACGGATACCCAGGCGCGTGGGGCGCGGAAGCCGTGTTCA
CCACCCTCTTGGTCTTGACCATCCTCTCCCAGCGGTCCCCCGGGACTCAG
CAACAGGCATACTTTGGACTGGCGGTCGGGGCTGTCTTGACGGGCGGCTT
GCTCGCCTCCGCCTCCATTTCGGGGGGAGGGTTGAATCCCGCCGTCGTCA
CGGGCCTGTATGCTTGGAGTGCGGACAAGGAGCAGGGGAGGGGGCTTTGG
GTCTATTGGCTAGGCCCGATGTGTGGTTCTATAGTCGCGGTGTTGAGTGC
TTGGGCCCTGGGTACGAGCGGGCGGAGTTTACGGGAGGAAAAGGAGGGCA
GGCGGGAGGGAGCCACCGAAAAAAAGGGTGGAGACATGGAAGAAGAGAAG
GAAGACAATGAGGGGGAGGGAGGGAAGGTCGAGGGCGGGGAGGCGTCGAT
GGAAGAGGGGTGGGAAGGAAGCGTGGAGGATCGTGAGGGAAAAACAAAGC
AGTTGGGAGAGTCGCAATGACTTGATGTGAACAGCGCGCATGGACGGAAT
ATCATACAATCGTTGAGAGGGAACTTTGTGTGGACGAACGCGTAAGACCA
ATGTGATGAGATCATAACCGTGGGAGTGTCAGAAAAAGTGCAGCATATTA
CAATGGTTTGTACATAGGTCATGCACGATTTGTTGGTCGCAAATAAAAAT
GCGGAAAAGGAGCTTCTCCAGCATCGCAAAGAGCCACATTAGGTCATCCG
ATTTCATAAATTTCTTAAATCAGGGTTGAGAACTATTTTCCAAGTTCAAC
GAATGGCAGCACAGGCTGCAGTGTTTTGAACAGGCACTCCCTCAAAAAAT
TAAATATTCCACTTTTGCCGTAGAAGGTGATTTTATCATCAACGTAGTTG
TGTCAGAAAACACATTTTAACGGTTCACCGCCAGGGTTGAAAAGAAACTG
CACCATTACCACCTTGCGGAGGGGCTTGAGTTGTACTCACGCCGAAGCTT
CATACTGATATGGACAAACTGATATATTGATGTTCAGGAATTGTAATTAA
TATCTGAAGACATGTCAGGGGTCGAGGCTTTGTCAGAAATTCGCCGCCGC
ACGCTTGATAACCTCCTGTCGAACGTGTCTCAGAAAATCCCTCC
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protein sequence of rna675

>rna675-protein ID=rna675-protein|Name=rna675|organism=Nannochloropsis gaditana|type=polypeptide|length=935bp
MNVDLSSIHLNCEVNGQTLPDRLDKDGHGSEHESLLITKREDGSSSKASR
RTPSAQSLPASSELTALSTQSIEKCGPEAVTPFETAHLSSRIPSAPPSSQ
SSAPTSTSTSSPPVGPNASLHSKFSLSRNFLSAIGVRKSKTGPVTAASPY
QASISAVYARTEMEPSPMREPQRQSLNASADLSYSGSSLTSTNSSISHVR
RNSSPLHPYQALVDCILAGPVDETTIRVAVRKRPLSAAERGNKDTDIIEI
QPPRNVVIHEPKKQLDLTPVTESHYFAFDHTFGAEVPNDRVYHTVCLPLV
VSMFRGGKSTCFAYGQTGSGKTFAMMGDQGRERAGGGKGRKGQPTGEGWE
NAGLYALAARDIFQVLAHPAFASRGWTLHVSFFEIYGGKLFDLLNRRAPV
RCLEDARQHVQFLGLTEKAMVSVEDLLTTIAEGQSQRSTGSTAANADSSR
SHAVLQLSLKGHACAERSAGRSPATSGSEAKSMLQHGKRNVRVKDSNQGR
LKEPVIGSFSFIDLAGSERGADTRNTEKATRMEGAEINTSLLALKEVIRA
LDRKQNHTPFRGSKLTQVLKDSLVGARAKTAMLACIAPALSSCEHTLNTL
RYADRVKENDASAVPGPENLLAPIATPVTWDKDSRDTPAGGEHKPSSTGR
SMLTSSLSDEEERVLAVSAETGGQGMRSGRNRENANLSATVNGTGNCRWS
AVSASSLRKGQQLAFLSRTTPGRHSERSCRGREGGGERRHLHGTRTLPES
SLPELPQIPNQQGTQTALRGQQPPLCPSPAVEAGDMQRYVEHLKQLRETV
CVEREAQRWRRRQRRRQKGTERGAETIPAEEEEDNGQEEGVARRQAEKEE
KAEKAAVYRTATHVLIGAHQSAHVQLLSLLREEVGLLQTAEGDRQDLILY
LASTEKILEAQKAQAESLMAHVQRVKAAQSELLEG
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mRNA from alignment at CM002456.1:139358..143059+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna675 ID=rna675|Name=rna675|organism=Nannochloropsis gaditana|type=mRNA|length=3702bp|location=Sequence derived from alignment at CM002456.1:139358..143059+ (Nannochloropsis gaditana)
CATCCAGTGAGAAGCGGCTTCCATGCGATATTCTCGCAGACTGCTGATTG GAATTGTCAACCTTAAAGTACAGGAAGAGAATGGGAGATTTTCATGTTTG CGACTGGCTCGAGTCCGTCGGTAAGTGCTCTATACTTTTCTTGGCTTATG ATTACTTTGCGTGTCTGACCGTCACCCTCTTTCCACGATATTTCAGGCCT TGGGTACTCGATTCCTAGATTTCAAGAGCTAGGTATATGTACCCCTGAGA GATTGGCTGCGTTTCCCTTTTCTGACTATGATCGAGCTGGCGTCGTGGAT ATCAACCATCGAAGAAAGCTTTTTTTCCTGATCCAGCGCCTCAACCTGGC TCTTGAGGAACAGACGAGAAAGATTGCGAGAGGGGGTAAGATTTACGCCG TATGCGCGCACATTATTTTTCGAAACCATGCGCACTCTGACGTGTGCTCC CCGATTCTCAGCATGATTTTTTTATTTTCCATTTCGCATGTCAACACGCT CGCATACAGTTCCTACAACAAAGCGCGATGAAGACGAAGCCTTATCTGCG TCTCAGTATGCACAAGTAATGAATGTGGATCTATCATCTATTCATCTGAA TTGTGAAGTAAATGGACAGACATTGCCGGACAGATTGGATAAGGACGGAC ACGGAAGCGAGCATGAAAGCCTCCTAATCACTAAAAGAGAAGACGGTAGC TCCTCTAAAGCCTCGCGTCGGACGCCATCTGCACAGTCGTTGCCCGCATC CAGCGAGCTAACAGCGCTCTCTACCCAATCTATCGAAAAATGTGGACCCG AGGCAGTGACGCCATTCGAAACAGCAcacctttcctcccgaaTTCCCTCc gctccgccctcctcccagtcctccgccccaacctccacgtccacttcctc tcctcctgtcggCCCGAATGCCAGCTTGCACTCGAAATTCAGCCTTTCTA GAAACTTCCTTTCCGCCATAGGTGTCCGTAAGAGCAAGACCGGGCCAGTC ACGGCAGCCTCCCCGTATCAGGCTTCTATCTCTGCGGTGTACGCACGCAC AGAAATGGAACCTTCTCCCATGAGAGAGCCGCAGAGGCAGAGCCTAAATG CCAGCGCTGACCTCAGCTACAGCGGATCAAGTCTTACCAGCACCAATTCG AGCATCTCGCATGTCCGACGGAACTCCTCGCCCCTGCACCCGTACCAAGC CCTGGTGGACTGTATCCTGGCGGGGCCCGTGGACGAGACGACGATCCGGG TGGCTGTGCGGAAGCGTCCGTTGAGCGCCGCAGAACGGGGCAATAAGGAC ACAGACATCATCGAGATCCAACCTCCTCGCAACGTGGTCATACACGAGCC GAAGAAGCAGCTGGATTTGACGCCGGTGACGGAATCCCACTACTTTGCCT TTGACCACACCTTCGGCGCAGAGGTTCCTAATGACCGCGTGTATCACACG GTTTGCCTGCCTTTGGTCGTGTCCATGTTCCGTGGAGGGAAGTCCACCTG TTTTGCCTACGGACAAACGGGGTCAGGAAAGACGTTTGCGATGATGGGGG ACCAAGGCAgagagcgggcgggagggggaaagggacggaagggccAACCC ACaggggagggctgggagaACGCAGGACTCTACGCACTGGCCGCCCGGGA TATTTTTCAGGTCTTGGCCCACCCGGCCTTTGCCTCGCGTGGGTGGACGC TGCATGTGAGTTTCTTCGAGATTTATGGCGGGAAGCTCTTCGATTTGTTG AACCGGCGGGCGCCTGTCCGATgtttggaggacgcgaggcAGCATGTTCA ATTTCTGGGACTGACGGAAAAAGCGATGGTAAGCGTGGAGGATCTTTTGA CCACCATCGCGGAGGGACAGAGCCAAAGGTCGACGGGCTCCACGGCCGCG AATGCCGATTCTTCGCGCTCCCACGCAGTTTTGCAACTCAGCCTGAAAGG TCATGCCTGTGCAGAAAGATCAGCGGGCAGGTCCCCGGCGACGTCCGGCT CCGAAGCGAAGAGCATGCTGCAGCACGGCAAACGGAACGTGCGTGTGAAG GACAGCAACCAGGGAAGGCTAAAAGAGCCCGTCATTGGCAGCTTCTCGTT CATCGATTTGGCAGGTTCGGAACGCGGCGCTGACACGCGCAATACCGaga aagcgacccggatggagggggcggagatCAATACCTCGCTCTTGGCGCTG AAAGAAGTGATTCGAGCGCTGGACCGTAAACAAAACCACACGCCCTTCCG GGGTAGCAAGCTCACACAAGTCTTGAAAGACTCCCTTGTTGGTGCCAGGG CAAAGACCGCGATGCTTGCTTGCattgcccccgccctctccagTTGCGAG CACACGCTCAACACCTTGCGCTATGCGGATAGGGTCAAGGAGAACGACGC CTCCGCCGTGCCCGGTCCGGAgaacctcctcgctcccattGCCACGCCCG TGACCTGGGATAAAGATAGCCGGGACACCCCAGCCGGGGGGGAGCATAAG CCCTCTTCAACCGGGAGGTCGATGCTCACATCCTCCCTCAGcgatgaaga ggagcgcGTCCTCGCCGTTTCCGCCGAGACGGGAGGCCAGGGTatgagga gcgggaggaacaGAGAAAACGCGAACTTAAGCGCGACAGTGAATGGCACA GGCAACTGTCGCTGGTCAGCTGTCTCTGCTTCAAGCCTTAGGAAAGGCCA GCAGCTTGCGTTCTTGTCGCGCACGACCCCGGGAAGGCACTCAGAAAGGT CGTgcagaggacgagagggagggggagagcgtcGTCATCTCCATGGGACT CGCACCTTGCCAGAGTCCTCTTTGCCAGAGCTGCCGCAGATACCAAACCA ACAAGGGACGCAAACGGCGCTTCGTGGCCAACAGCCTCcgctttgcccct cccccgcggtcgaggcgggggacatGCAACGGTACGTAGAGCACTTGAAG CAGCTGCGGGAGACCGTGTGCGTGGAGCGTGAGGCGCAACGGTGGCGACG ACGGCAGCGACGGCGTCAGAAAGGGACGGAACGGGGCGCCGAAACCATCc cagcggaagaggaagaggacaatggccaggaagaaggagtcgCGCGGAGG CAagcggaaaaggaggaaaaggctgaGAAAGCAGCAGTGTATCGCACGGC CACGCACGTGCTGATCGGGGCCCACCAGAGTGCGCATGTGCAGCTATTGT CCCTCCTGCGCGAGGAGGTCGGCCTGCTGCAGACTGCAGAGGGGGACCGA CAAGACCTGATCCTGTACTTGGCTTCCACGGAGAAGATTCTAGAAGCTCA GAAGGCACAGGCGGAAAGTCTAATGGCCCACGTGCAGCGGGTTAAAGCCG CCCAGTCGGAGCTTCTGGAGGGctaggagggaaaaggagggggctggagg cgggACACGGACATTGGGGAAAGCGTACTTggaatggagagggaaaggcg aaggaggaaaggaaggttgTTCCTGGATTGTGACAACTACTGAGCCGCAA AACCAGGAGAGTCAAATCGTCGGCTATGGGCTTGAAGGAATAGTCTATCC GTTATCTACTTTGATAAGACATGAGTGACAGCATCTATGTTTCAGCCGAG CTGCCCATCCAAGCTTTACTTTAGGCGGGCATAACAATTTACCTTCTTTC GGTGTCACAGCCATCCCAACACGTACACTCCGCATCAAGTACCGCACAAA CT
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Coding sequence (CDS) from alignment at CM002456.1:139358..143059+

>rna675 ID=rna675|Name=rna675|organism=Nannochloropsis gaditana|type=CDS|length=2808bp|location=Sequence derived from alignment at CM002456.1:139358..143059+ (Nannochloropsis gaditana)
ATGAATGTGGATCTATCATCTATTCATCTGAATTGTGAAGTAAATGGACA
GACATTGCCGGACAGATTGGATAAGGACGGACACGGAAGCGAGCATGAAA
GCCTCCTAATCACTAAAAGAGAAGACGGTAGCTCCTCTAAAGCCTCGCGT
CGGACGCCATCTGCACAGTCGTTGCCCGCATCCAGCGAGCTAACAGCGCT
CTCTACCCAATCTATCGAAAAATGTGGACCCGAGGCAGTGACGCCATTCG
AAACAGCAcacctttcctcccgaaTTCCCTCcgctccgccctcctcccag
tcctccgccccaacctccacgtccacttcctctcctcctgtcggCCCGAA
TGCCAGCTTGCACTCGAAATTCAGCCTTTCTAGAAACTTCCTTTCCGCCA
TAGGTGTCCGTAAGAGCAAGACCGGGCCAGTCACGGCAGCCTCCCCGTAT
CAGGCTTCTATCTCTGCGGTGTACGCACGCACAGAAATGGAACCTTCTCC
CATGAGAGAGCCGCAGAGGCAGAGCCTAAATGCCAGCGCTGACCTCAGCT
ACAGCGGATCAAGTCTTACCAGCACCAATTCGAGCATCTCGCATGTCCGA
CGGAACTCCTCGCCCCTGCACCCGTACCAAGCCCTGGTGGACTGTATCCT
GGCGGGGCCCGTGGACGAGACGACGATCCGGGTGGCTGTGCGGAAGCGTC
CGTTGAGCGCCGCAGAACGGGGCAATAAGGACACAGACATCATCGAGATC
CAACCTCCTCGCAACGTGGTCATACACGAGCCGAAGAAGCAGCTGGATTT
GACGCCGGTGACGGAATCCCACTACTTTGCCTTTGACCACACCTTCGGCG
CAGAGGTTCCTAATGACCGCGTGTATCACACGGTTTGCCTGCCTTTGGTC
GTGTCCATGTTCCGTGGAGGGAAGTCCACCTGTTTTGCCTACGGACAAAC
GGGGTCAGGAAAGACGTTTGCGATGATGGGGGACCAAGGCAgagagcggg
cgggagggggaaagggacggaagggccAACCCACaggggagggctgggag
aACGCAGGACTCTACGCACTGGCCGCCCGGGATATTTTTCAGGTCTTGGC
CCACCCGGCCTTTGCCTCGCGTGGGTGGACGCTGCATGTGAGTTTCTTCG
AGATTTATGGCGGGAAGCTCTTCGATTTGTTGAACCGGCGGGCGCCTGTC
CGATgtttggaggacgcgaggcAGCATGTTCAATTTCTGGGACTGACGGA
AAAAGCGATGGTAAGCGTGGAGGATCTTTTGACCACCATCGCGGAGGGAC
AGAGCCAAAGGTCGACGGGCTCCACGGCCGCGAATGCCGATTCTTCGCGC
TCCCACGCAGTTTTGCAACTCAGCCTGAAAGGTCATGCCTGTGCAGAAAG
ATCAGCGGGCAGGTCCCCGGCGACGTCCGGCTCCGAAGCGAAGAGCATGC
TGCAGCACGGCAAACGGAACGTGCGTGTGAAGGACAGCAACCAGGGAAGG
CTAAAAGAGCCCGTCATTGGCAGCTTCTCGTTCATCGATTTGGCAGGTTC
GGAACGCGGCGCTGACACGCGCAATACCGagaaagcgacccggatggagg
gggcggagatCAATACCTCGCTCTTGGCGCTGAAAGAAGTGATTCGAGCG
CTGGACCGTAAACAAAACCACACGCCCTTCCGGGGTAGCAAGCTCACACA
AGTCTTGAAAGACTCCCTTGTTGGTGCCAGGGCAAAGACCGCGATGCTTG
CTTGCattgcccccgccctctccagTTGCGAGCACACGCTCAACACCTTG
CGCTATGCGGATAGGGTCAAGGAGAACGACGCCTCCGCCGTGCCCGGTCC
GGAgaacctcctcgctcccattGCCACGCCCGTGACCTGGGATAAAGATA
GCCGGGACACCCCAGCCGGGGGGGAGCATAAGCCCTCTTCAACCGGGAGG
TCGATGCTCACATCCTCCCTCAGcgatgaagaggagcgcGTCCTCGCCGT
TTCCGCCGAGACGGGAGGCCAGGGTatgaggagcgggaggaacaGAGAAA
ACGCGAACTTAAGCGCGACAGTGAATGGCACAGGCAACTGTCGCTGGTCA
GCTGTCTCTGCTTCAAGCCTTAGGAAAGGCCAGCAGCTTGCGTTCTTGTC
GCGCACGACCCCGGGAAGGCACTCAGAAAGGTCGTgcagaggacgagagg
gagggggagagcgtcGTCATCTCCATGGGACTCGCACCTTGCCAGAGTCC
TCTTTGCCAGAGCTGCCGCAGATACCAAACCAACAAGGGACGCAAACGGC
GCTTCGTGGCCAACAGCCTCcgctttgcccctcccccgcggtcgaggcgg
gggacatGCAACGGTACGTAGAGCACTTGAAGCAGCTGCGGGAGACCGTG
TGCGTGGAGCGTGAGGCGCAACGGTGGCGACGACGGCAGCGACGGCGTCA
GAAAGGGACGGAACGGGGCGCCGAAACCATCccagcggaagaggaagagg
acaatggccaggaagaaggagtcgCGCGGAGGCAagcggaaaaggaggaa
aaggctgaGAAAGCAGCAGTGTATCGCACGGCCACGCACGTGCTGATCGG
GGCCCACCAGAGTGCGCATGTGCAGCTATTGTCCCTCCTGCGCGAGGAGG
TCGGCCTGCTGCAGACTGCAGAGGGGGACCGACAAGACCTGATCCTGTAC
TTGGCTTCCACGGAGAAGATTCTAGAAGCTCAGAAGGCACAGGCGGAAAG
TCTAATGGCCCACGTGCAGCGGGTTAAAGCCGCCCAGTCGGAGCTTCTGG
AGGGctag
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Synonyms
Publications