rna6749, rna6749 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6749
Unique Name	rna6749
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2423
Alignment location	CM002469.1:411408..413832 +

Link to JBrowse

Properties


Property Name	Value
Product	histone-lysine n-methyltransferase setd3 isoform a
Orig transcript id	gnl\|cribi\|Naga_100082g25.9348.mrna
Orig protein id	gnl\|cribi\|Naga_100082g25.9348
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:411408..413832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100082g25	gene6525	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6749	rna6749-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23916.1	cds6733	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:411408..413832+
coding sequence from alignment at CM002469.1:411408..413832+

mRNA sequence

>rna6749 ID=rna6749|Name=rna6749|organism=Nannochloropsis gaditana|type=mRNA|length=2423bp
AAAGTACCTTCGTTCACAAGTAAGAAGGAAGCTCTTGCTTTTATTAAAGT
GCATTGCCGAGTAGGCAGCAACCCGGACCATAGCCACTATCAACACATGT
TTTCCCTTTTAACAAGCTGGGAAGATCTTAATAAATATTTGGTAGCAAAG
ATTTTGTATTACGATAAACTCCTGGGCAAAGTATCGAAAGGACCATCGAC
CTCATCAGTGGGCGTGGACCTAAGCCAGAATGTTTGGCTGAGAAGTCCGC
CGGAAGACTTTGTAGGGCTTGATGTCAAAGGGGTTGTAGCTGCGCTCGAT
CAGAGGCTTAATCTCTCATTGCACCGCGTCCTCTCTTCGCCTTCTACGAT
AAACACTCTCAAGTACCTCTTTGAGCACATGCGCTGCGGCATCTTCGTGA
AGATTAAGGCCGGGCAGCTGGTGATGTTTGTACCTTTTGCAAACGACTCC
TATACAAATACGTGGGCAAGCGAGATGGAGTTCGATTCGGCGGACGGCAC
CATGGAGACGTACTATCAGGAAAAAATGAAAGGTGGCTTTCGCAAAGAGA
ACATACTCCCCAATGTGGCGGAGTGGTGGGCGAATGGGAACATGATCGAC
AACGAGAAGGTGAGGGCAGGGACGGACAAGCGCTTCGGCCAAGTCTGGGG
GGACTTCTTCCTCTGCCAGCTGAAGGAGATGCTGCAAGCTGTCTGTCAGG
AGCGCAAAGTTGCCGACTGCGAGTTTTTCATCAACAAACGGGACTATCCT
CAACTCAAAACGCATCTGAGAAAGGCGAGGACCCTGACGGACGAGCCAAG
GCCTCAGGACAGCCCAGCGCCCGTGACTGCAGTCGAGCCGTATGGTTTCA
TTTTCGGAAAGGATGATCGAGATGCGAACCAGGATGTGCCCTTGGGGAGA
CACGCGTACAGCTCCTATGCTCCCATAGCCTCCCTGTATGTCTCTTCTCG
CTTCGCCGACATCCCCTGGCCGACCACCGAGGACTGGGAAGCGGCGACGG
GGAGGGTATATCCGCATACCTTCATGCACCGGTTTGACGCGGAGACAGAC
GAGCTGGTGGTGGAGAATGAACCGCGCGACCTCTTCACCGAGGCAAATTT
CCAGAAATTTAGTCAGGTGCCATGGGACGACAAGACTCCCACAGCCTTCT
TCCGAGGGACAGCCACGGGTGGAGGCACGACAATTGAGACGAATCAGCGC
CTCAGGCTCGCCCATCTTAGCTATCTCTGGAGCCAAGACGGGTTCTACAA
CGGGCGGGAGAATGAGGATTTCTCCGCACCATACTTGGACGCTAAGCTCA
CGGGCTGGAATATGCGGGATAAAAAGATTGCCTCGGAGCCCATGACCTTC
ATTAAAAAAAAGGACTTCGCCTTCAAGGTGGGGAAAAGTAATTTTGTCCC
CATCTACGAGCAGGCGCGCTTTAAATACCTCGTCTACGTAGAGGGCCACT
GCGCCGCGTGCCGCTACTCCTTCCTTATGCGACTGGGGTCTGTCATCCTG
AGAGTAGACTCGCAGTGTGTGGCCGATCAAATGTGGTATTTCCCTCTCCT
GAGACCCTTTGTGGACCATGTGCCCGTCAAGAGCGACTTGTCGGACCTGG
ATGAGCAGATAAAATGGTGCCGCGACCACGACTCCGAGTGCCGGCAGATC
GCTGCCAACGCTCGCCGTCTTTACGACACCTACTGCTCGAAGGAAGGAAT
ATTGGACTACTTGCAGCTTGTGACTCATAAAATTGCGGCGCGGTGGCATA
GGGTGCCTTCCTGGTGGCAGCCGTCTCCCCTGGGGTGCCAGCGCCCACGA
GGTCCTCGGGGTGGGGGGGATGACCGTTGTAGCTGTCGACGATGCAACGA
AGACCGAAAGAGAACTCATCAGGCTGGAGATTGGAAAGCTCGTCAACATG
AAGAGCGCAAAATCCGAGCCGTTGAACGCCGTGCGTCAAAAATGGCATCT
CGCAAGAAGTCTCGTGGTGCCAGGGGGGCAGAGGCGGGCCAGGATACGTC
CACTGAAACCATGTCTGGAAGCACCACCACGGGCGATGTCGAAGATGACG
AAGATGACCTGGAAGCATTGTTGGCATGAAAAATAATACATGAAGGGGAA
AAAAGAGCGAGACGCATGAAAGCTGTAGCGAAATAATGATTTCTTTTGTC
GTAGCTCGTGCTTATTGCGAAGAAGATTACAGGCTGTGGGTTTCGTCATG
GTCTAATAGATTCCAATTTTGTCTCAATTGCGTAAGTGTAGGCGTAGTGA
GAGTTATCTCAATGGAGAGTGTTGTCTTCATCTCGACGTTTTTCCCCGTT
TCGAGGATGCACCAGGGAAAGTGAGAACAAATGGGGGGTAAATAATGGCG
TGCGCCAGCCAAAATGGCTATAAGACGCCAAAACTTTGAATAAATGCTTC
CCGAAAAGGTTTTACTGTCCTCG

protein sequence of rna6749

>rna6749-protein ID=rna6749-protein|Name=rna6749|organism=Nannochloropsis gaditana|type=polypeptide|length=440bp
MSEAEGYGIMAVEDLKAGELILQVPLSICVHIESLHLSVLHDIVKAEPHL
MAFDSKDELLALLLMAERRAGSQSFWWPYLSLMPREYDTPLYWEEEERKY
LAGTNVGLLTSMMEQRILRDWHEIHAKLVLKYPSVLGGLTVEDYRWALST
IWSRAVGVERGDSHSYLRCLAPALDMCNHSPAAASCLEDLIKYDAQMDAL
RLQQISPVSRGQECYLFYGPYSNAKLLYSYGFMAAQNPFRGVDFWVKVPS
DFPLAEWKQEQLLAHDLTKEQPYDFRGTLLGNGVSVALMATIRLIHLAPE
EFEDVEKVFHGEVVSLRNEEASLRGLVRLLQEKVQTFTPVEEDLGALAKL
ERVMTSTPIFGDEDAQIRRLGVPREKQAQEAECSADEEDRIRFERQKATL
RRNFIRRAYAYKVVVEDKLIFQETLACLSHRLQELVCGGS

mRNA from alignment at CM002469.1:411408..413832+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6749 ID=rna6749|Name=rna6749|organism=Nannochloropsis gaditana|type=mRNA|length=2425bp|location=Sequence derived from alignment at CM002469.1:411408..413832+ (Nannochloropsis gaditana)
AGGCTCCCGCTTGTAGGGGGCGAAGAGGCAGCAAGACGCTGGCGGCGAGG
TCGACGACGCAGTGGCGCTCGCTCTTGTAGTCGGCGGGGAGACAAGGAAA
CCTCTTTTTCGGCACAAAACATCACACTTCTTGTGAATGATATGTCACAT
TTATCATGGATTTACAATGCAGCCGTCGCGCCCCAAACACCGCCATCTCC
GGCTAGTCTGGCTAGTTCACGCTCTGTTTCCCGGTCAAGGAGGTGCGCCG
CATGGAGGGCAACGATTTGACCACGGGACTACACTTTCCTATCTTCGACA
TTTTCCATAGCATATTGAATCCACTGTCAAACCAGCTTaaaggggaaagg
gtagCTGCATCCCAGGACTCGGAGGAACGCTGTGTTAGTGCGTGCTGCTG
AAAGGTGGGTTCCTAGGCGAGACAGACGAtaaggtggaggcccttgccTC
CGTTAATGAAAGCCTAGAATGAACGCAGGCCCCGGCCAAGTCGACAGGAT
TCTGGATGCGTTTACAGGCTGGTTCTTGAAAAATGGCGGTGCTTTGCACA
AGGTAAGTCGGAAAAATGTTTGGCAAACTAGATCACATTACAAGCTTGCT
ACTCAGCGTCCGTACTCTGTCCATAGTACAATCACGAAGATTTGAGGTCA
CGCGAGGTTTCATAATGAATTGCAACACCACGCGTTTTTTTCGTGCATGT
CGCTTATTCTTTTCCTCACCGCGACATGATGCAGGTCCACGTGGCCCTCA
TGAGCGAGGCCGAAGGCTACGGGATAATGGCGGTTGAAGACCTGAAGGCA
GGGGAACTGATACTGCAGGTCCCCCTGTCCATATGTGTACATATCGAAAG
TCTTCACCTCTCAGTATTGCATGACATCGTGAAAGCAGAGCCGCACCTTA
TGGCATTCGATTCGAAGGATGAATTGCTTGCACTTTTGCTGATGGCAGAA
CGACGGGCGGGCAGCCAATCATTTTGGTGGCCCTACCTTAGTTTGATGCC
ACGCGAATACGACACACCGCTttactgggaggaggaggagcgaaaaTATT
TGGCCGGTACAAACGTGGGATTACTGACTTCAATGATGGAGCAACGTATT
TTGCGTGACTGGCACGAGATCCACGCAAAGTTAGTTCTCAAGTACCCGTC
AGTGTTGGGAGGCCTCACCGTCGAGGACTACAGGTGGGCTCTTTCGACCA
TATGGAGCCGGGCAGTGGGCGTAGAGCGGGGTGACAGCCATTCTTACTTA
CGGTGCTTGGCACCAGCTCTAGATATGTGCAACCACAGCCCCGCGGCGGC
TTCGTGTCTTGAAGACTTGATCAAATATGATGCTCAGATGGATGCCTTAC
GCCTTCAACAAATCAGTCCAGTATCAAGGGGACAAGAGTGTTACCTGTTT
TACGGACCGTACAGCAACGCCAAGCTTCTTTACAGCTACGGCTTTATGGC
AGCCCAAAACCCCTTTCGCGGTGTCGATTTCTGGGTAAAAGTTCCTTCAG
ATTTTCCACTCGCAGAATGGAAACAAGAGCAGCTACTCGCACATGATTTA
ACAAAAGAGCAGCCTTACGACTTTCGAGGAACGCTGCTTGGAAACGGGGT
ATCGGTCGCCTTGATGGCCACGATCCGTTTGATCCATCTGGCTCCGGAGG
AATTTGAAGATGTGGAGAAGGTTTTTCATGGAGAAGTTGTGAGTCTACGG
AACGAAGAGGCATCTTTAAGAGGGCTTGTTAGGCTGTTGCAAGAAAAGGT
GCAGACCTTTACACCGGTCGAAGAGGATTTGGGTGCCCTTGCGAAACTAG
AGCGTGTTATGACATCCACCCCGATTTTTGGGGACGAGGATGCTCAGATC
CGCAGACTCGGAGTGCCCAGAGAAAAACAAGCCCAGGAGGCAGAATGTAG
CGCGGACGAAGAAGATAGAATACGCTTTGAACGGCAAAAAGCCACCCTTC
GGAGAAATTTTATTCGTCGCGCTTATGCATATAAGGTGGTGGTAGAGGAC
AAGTTGATTTTCCAGGAAACACTTGCATGCTTATCGCATCGCCTTCAGGA
GCTGGTTTGTGGGGGATCATAAAATGATTGCGACATACGTACTGCAGAAA
TTTCCCACGCAAATATACCATCGTATAATCAGGAAGTTTTTTGATGGGTA
ATTCACATTAGCGACAGGCGTTTTGACCTCAAAGTTATATTCCAATTTGT
CGTCACATTATTTGATCAACCACGACATGAGTGAAATTGTGGGTACTTTC
TTTGAATGCTATTCTGGTTTCCTTAAGCATTTAAAACATGAGATATGACG
ACTACAGGGAGAAAGTTGTCTAGTAATGGAGATTTGATTCCACAAACTCC
CGAGCTTTGCTCTTTACCCGCTCAACAGACTGGATGTCTCCATGTACTAG
CTCCAATTGCACGTATTTTTTCATA

Coding sequence (CDS) from alignment at CM002469.1:411408..413832+

>rna6749 ID=rna6749|Name=rna6749|organism=Nannochloropsis gaditana|type=CDS|length=1323bp|location=Sequence derived from alignment at CM002469.1:411408..413832+ (Nannochloropsis gaditana)
ATGAGCGAGGCCGAAGGCTACGGGATAATGGCGGTTGAAGACCTGAAGGC
AGGGGAACTGATACTGCAGGTCCCCCTGTCCATATGTGTACATATCGAAA
GTCTTCACCTCTCAGTATTGCATGACATCGTGAAAGCAGAGCCGCACCTT
ATGGCATTCGATTCGAAGGATGAATTGCTTGCACTTTTGCTGATGGCAGA
ACGACGGGCGGGCAGCCAATCATTTTGGTGGCCCTACCTTAGTTTGATGC
CACGCGAATACGACACACCGCTttactgggaggaggaggagcgaaaaTAT
TTGGCCGGTACAAACGTGGGATTACTGACTTCAATGATGGAGCAACGTAT
TTTGCGTGACTGGCACGAGATCCACGCAAAGTTAGTTCTCAAGTACCCGT
CAGTGTTGGGAGGCCTCACCGTCGAGGACTACAGGTGGGCTCTTTCGACC
ATATGGAGCCGGGCAGTGGGCGTAGAGCGGGGTGACAGCCATTCTTACTT
ACGGTGCTTGGCACCAGCTCTAGATATGTGCAACCACAGCCCCGCGGCGG
CTTCGTGTCTTGAAGACTTGATCAAATATGATGCTCAGATGGATGCCTTA
CGCCTTCAACAAATCAGTCCAGTATCAAGGGGACAAGAGTGTTACCTGTT
TTACGGACCGTACAGCAACGCCAAGCTTCTTTACAGCTACGGCTTTATGG
CAGCCCAAAACCCCTTTCGCGGTGTCGATTTCTGGGTAAAAGTTCCTTCA
GATTTTCCACTCGCAGAATGGAAACAAGAGCAGCTACTCGCACATGATTT
AACAAAAGAGCAGCCTTACGACTTTCGAGGAACGCTGCTTGGAAACGGGG
TATCGGTCGCCTTGATGGCCACGATCCGTTTGATCCATCTGGCTCCGGAG
GAATTTGAAGATGTGGAGAAGGTTTTTCATGGAGAAGTTGTGAGTCTACG
GAACGAAGAGGCATCTTTAAGAGGGCTTGTTAGGCTGTTGCAAGAAAAGG
TGCAGACCTTTACACCGGTCGAAGAGGATTTGGGTGCCCTTGCGAAACTA
GAGCGTGTTATGACATCCACCCCGATTTTTGGGGACGAGGATGCTCAGAT
CCGCAGACTCGGAGTGCCCAGAGAAAAACAAGCCCAGGAGGCAGAATGTA
GCGCGGACGAAGAAGATAGAATACGCTTTGAACGGCAAAAAGCCACCCTT
CGGAGAAATTTTATTCGTCGCGCTTATGCATATAAGGTGGTGGTAGAGGA
CAAGTTGATTTTCCAGGAAACACTTGCATGCTTATCGCATCGCCTTCAGG
AGCTGGTTTGTGGGGGATCATAA

Synonyms

Publications