rna6741, rna6741 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6741
Unique Name	rna6741
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2293
Alignment location	CM002469.1:389576..391978 +

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Properties


Property Name	Value
Product	holliday junction resolvase
Orig transcript id	gnl\|cribi\|Naga_100027g49.160.mrna
Orig protein id	gnl\|cribi\|Naga_100027g49.160
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:389576..391978 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100027g49	gene6517	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6741	rna6741-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23982.1	cds6725	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:389576..391978+
coding sequence from alignment at CM002469.1:389576..391978+

mRNA sequence

>rna6741 ID=rna6741|Name=rna6741|organism=Nannochloropsis gaditana|type=mRNA|length=2293bp
AAAATGAGTGGATGTCTGCCTTTTGATTCCTGGAAGGTGATTACGGCGTA
GTTTTCTTTCAACTGGAGAATTATATGGGATGAAATGTCATCAACTGTGG
AATAAAAGATGTATGATTCCATTTTAATGCGTAATAAATTTGCACTTATA
CGAAATGTTGCCATTTTGGCGCGAAGGAACTTGCTTCCTTGTACGCCTCG
TTTCCTGTTAGTGCTGTCAGCTAACCGGCCGATGGATATTTCCCCTACTC
TTACACTTCTGCTGATTAAATAAATTCTTACGGCCATCAACTCAAATGAT
GTGCAGGGCCGGAGATTGAGGAAGAGATTTGGAGCATCAACAATGGGCGT
TTAATCTGCAGGAGACTTGACCATATCTGCTTATGCCTTATGCCATATGC
TGTCTGCATATTTTCTTGGTCTGCCTGCTCTTCTTCTCAGTTATAAGCCC
AGGGTTTCCATTCTGGGTTCCCCGACACCCGCGTTCTTGTCGCCATGAGC
TTCGTTTAACTTATGAAAGACTTTGGGAGCCGTCATCTCCCCCTTCCCAA
ACGGCAGCTTCATTGGATCGAAACCTCTCAACGGCTGTGTTGGACTTGTT
GGGCAGCCGTACATTGGGACTTGATTGGGGTCACAAGAAGATTGGTGTAG
CATTGACAGCGGGCTTCAGCCAACGACCTCTGGGTACAATCATCAACGTA
GCGGGTCACAGCAACAACGCAACACGACATCGCCCCACCATTGATCAATT
GTTGGGTATCTTGCGTGCAGAAGGGGCCATTCGAATTGTGATAGGATATC
CACTCTTCCGCGACGGAACTTTAAGCCCTCAGGCAAACGCGACTAAGGTA
TTTGCCCGTATGGTCGCAGATCGCGCCTTGGAAACGGGTGTTATGGCGTC
GGATAGAACCCCATTTGTGTATTTATGGGACGAGCGCTTGACCTCGCAGG
CCGCAAAAGTGAACATAAAGACAAAATCGTTCTTGCACAGCTCTGATGAC
GTGGATTCTCAAGCAGCTTGTCTTATCTTGGAAGACTTTTACAGACATAA
AGGTTACAAAGCGGAGGTAGTGTGGCCAAATCCCTCAATCTTAGGCGAGA
AAACCACCATGGGAGCGACAAATGGGACTCCGCCAGCTGAAAGACGTCCT
TTATCAGGGAGACGCAGAAATGATGACGTTGTCTTTTCACCCAATGTCGC
ATTCACAAGTCGAGCCAATTTCTCGTACGACGAATGGAGACGGGCTGAAC
TTTTGCGCTACGGCCGAGAGTTTCCTGTTGTGTCCCCATCCCATTCTAAA
GACAGCGAAAATGGTGCAGGTACCGGAAAGAAGAAAAAGAAGAGGAAGAA
AAAGAAATAATTGCGTTTTTCTTGCGACACCAGGTGGAGGTGCGGTAGTG
GCAGAGGTGTAAAGCAGGATAAAAGGAACCTGCGGGAAGGTCTCTCCGCT
TTGCTCTAATGAATTGCACATCCTTTGGAAGCAATTATAATAAATGTTAC
CATGTTACCTGGGACTCCTGAATGTTGACGGATTTGTGTATGTGTTGTTT
TGTGAGTATAGATTCTATGATAACCTTTCGTGAGGAAAAAATCAAAAACA
TGCAGATCTGGATCACTCTTCTTTCCGAATTATATCCCTCAGCTTCACGT
GGAAGCGGCTTTACAATCTGATACGTGTGTGTCTTGGAAAGATGCTCCGA
GGGTTTTGCATGGACAGATCTCTGTTACAGGAAGCCTTGCCCTGCGCCCT
GATTACTTCATGACGGACATCCTGTTCTGTGTGAAGCAAAGTCTTCCATC
AGGGTATCCCACGCACAAGAGGAAAAGACTTCACCATCTATCAGACAAAA
GGAGAGAGAGAGGTAACGGAAACAACGTCATTGGGATAAGAAATGGCGTT
GCCCAAAAAAATATCTCTGGCCCCGCCCATACTTTTACACACCAGATGGG
TAGTGGCTCTGGGTGAAGCAGAGGGTATGTGGCCGTCATAATTGATTGAT
TCTCTGTTTTGACTGGGATTCGAGGAGCGTCTCGAAGCTTGTTACACTGT
TTTTTTCCAATGAGCTTTAGACCGGTCAAAAGCCAACGAAGCTGTTTGGC
GTGGCCCATCACGCTTGTCGATTTTTGTACGACCACGTGGGTAAAAAGAT
GATTAAAGTCCGAGGCTTTCCATCATGTTGCTGATTAAAGACAGATACTA
TTTAATTTTTTGGATACCGTACGTGTGTGCAATTCATGCCCCTCTGGTTC
TGTAGAATGAACAGGATCATACTGTTAAAATAGTTACGTGTTG

protein sequence of rna6741

>rna6741-protein ID=rna6741-protein|Name=rna6741|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
MPYAICCLHIFLVCLLFFSVISPGFPFWVPRHPRSCRHELRLTYERLWEP
SSPPSQTAASLDRNLSTAVLDLLGSRTLGLDWGHKKIGVALTAGFSQRPL
GTIINVAGHSNNATRHRPTIDQLLGILRAEGAIRIVIGYPLFRDGTLSPQ
ANATKVFARMVADRALETGVMASDRTPFVYLWDERLTSQAAKVNIKTKSF
LHSSDDVDSQAACLILEDFYRHKGYKAEVVWPNPSILGEKTTMGATNGTP
PAERRPLSGRRRNDDVVFSPNVAFTSRANFSYDEWRRAELLRYGREFPVV
SPSHSKDSENGAGTGKKKKKRKKKK

mRNA from alignment at CM002469.1:389576..391978+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6741 ID=rna6741|Name=rna6741|organism=Nannochloropsis gaditana|type=mRNA|length=2403bp|location=Sequence derived from alignment at CM002469.1:389576..391978+ (Nannochloropsis gaditana)
AAAATGAGTGGATGTCTGCCTTTTGATTCCTGGAAGGTGATTACGGCGTA
GTTTTCTTTCAACTGGAGAATTATATGGGATGAAATGTCATCAACTGTGG
AATAAAAGATGTATGATTCCATTTTAATGCGTAATAAATTTGCACTTATA
CGAAATGTTGccattttggcgcgaaggaaCTTGCTTCCTTGTACGCCTCG
TTTCCTGTTAGTGCTGTCAGCTAACCGGCCGATGGATATTTCCCCTACTC
TTACACTTCTGCTGATTAAATAAATTCTTACGGCCATCAACTCAAATGAT
GTGCAGGGCCGGAGATTGAGGAAGAGATTTGGAGCATCAACAATGGGCGT
TTAATCTGCAGGAGACTTGACCATATCTGCTTATGCCTTATGCCATATGC
TGTCTGCATATTTTCTTGGTCTgcctgctcttcttctcagTTATAAGCCC
AGGGTTTCCATTCTGGGTTCCCCGACACCCGCGTTCTTGTCGCCATGAGC
TTCGTTTAACTTATGAAAGACTTTGGGAGCCgtcatctcccccttcccaa
aCGGCAGCTTCATTGGATCGAAACCTCTCAACGGCTGTGTTGGACTTGTT
GGGCAGCCGTACATTGGGACTTGATTGGGGTCACAAGAAGATTGGTGTAG
CATTGACAGCGGGCTTCAGCCAACGACCTCTGGGTACAATCATCAACGTA
GCGGGTCACAGCAACAACGCAACACGACATCGCCCCACCATTGATCAATT
GTTGGGTATCTTGCGTGCAGAAGGGGCCATTCGAATTGTGATAGGATATC
CACTCTTCCGCGACGGAACTTTAAGCCCTCAGGCAAACGCGACTAAGGTA
TTTGCCCGTATGGTCGCAGATCGCGCCTTGGAAACGGGTGTTATGGCGTC
GGATAGAACCCCATTTGTGTATTTATGGGACGAGCGCTTGACCTCGCAGG
CCGCAAAAGTGAACATAAAGACAAAATCGTTCTTGCACAGCTCTGATGAC
GTGGATTCTCAAGCAGCTTGTCTTATCTTGGAAGACTTTTACAGACATAA
AGGTTACAAAGCGGAGGTAGTGTGGCCAAATCCCTCAATCTTAGGCGAGA
AAACCACCATGGGAGCGACAAATGGGACTCCGCCAGCTGAAAGACGTCCT
TTATCAGGGAGACGCAGAAATGATGACGTTGTCTTTTCACCCAATGTCGC
ATTCACAAGTCGAGCCAATTTCTCGTACGACGAATGGAGACGGGCTGAAC
TTTTGCGCTACGGCCGAGAGTTTCCTGTTGTGTCCCCATCCCATTCTAAA
GACAGCGAAAATGGTGCAGGTAccggaaagaagaaaaagaagaggaagaa
aaagaaataatTGCGTTTTTCTTGCGACACCAGGTGGAGGTGCGGTAGTG
GCAGAGGTGTAAAGCAGGATAAAAGGAACCTGCGGGAAGGTCTCTCCGCT
TTGCTCTAATGAATTGCACATCCTTTGGAAGCAATTATAATAAATGTTAC
CATGTTACCTGGGACTCCTGAATGTTGACGGATTTGTGTATGTGTTGTTT
TGTGAGTATAGATTCTATGATAACCTTTCGTGaggaaaaaatcaaaaacA
TGCAGATCTGGATCACTCTTCTTTCCGAATTATATCCCTCAGCTTCACGT
GGAAGCGGCTTTACAATCTGATACGTGTGTGTCTTGGAAAGATGCTCCGA
GGGTTTTGCATGGACAGGTCAGATTGTTGACATAAATACGTTGGGTGTAT
TTGGTAATGAAGCGCTGCAGATACGCATCTAGGCGGTGATTTAATTAATT
GCATCATCACCCTTCATTCAATGTTAGATCTCTGTTACAGGAAGCCTTGC
CCTGCGCCCTGATTACTTCATGACGGACATCCTGTTCTGTGTGAAGCAAA
GTCTTCCATCAGGGTATCCCACGCACAAGAGGAAAAGACTTCACCATCTA
TCAGacaaaaggagagagagaggtaaCGGAAACAACGTCATTGGGATAAG
AAATGGCGTTGCCCAAAAAAATATCTCTGGCCCCGCCCATACTTTTACAC
ACCAGATGGGTAGTGGCTCTGGGTGAAGCAGAGGGTATGTGGCCGTCATA
ATTGATTGATTCTCTGTTTTGACTGGGATTCGAGGAGCGTCTCGAAGCTT
GTTACACTGTTTTTTTCCAATGAGCTTTAGACCGGTCAAAAGCCAACGAA
GCTGTTTGGCGTGGCCCATCACGCTTGTCGATTTTTGTACGACCACGTGG
GTAAAAAGATGATTAAAGTCCGAGGCTTTCCATCATGTTGCTGATTAAAG
ACAGATACTATTTAATTTTTTGGATACCGTACGTGTGTGCAATTCATGCC
CCTCTGGTTCTGTAGAATGAACAGGATCATACTGTTAAAATAGTTACGTG
TTG

Coding sequence (CDS) from alignment at CM002469.1:389576..391978+

>rna6741 ID=rna6741|Name=rna6741|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002469.1:389576..391978+ (Nannochloropsis gaditana)
ATGCCTTATGCCATATGCTGTCTGCATATTTTCTTGGTCTgcctgctctt
cttctcagTTATAAGCCCAGGGTTTCCATTCTGGGTTCCCCGACACCCGC
GTTCTTGTCGCCATGAGCTTCGTTTAACTTATGAAAGACTTTGGGAGCCg
tcatctcccccttcccaaaCGGCAGCTTCATTGGATCGAAACCTCTCAAC
GGCTGTGTTGGACTTGTTGGGCAGCCGTACATTGGGACTTGATTGGGGTC
ACAAGAAGATTGGTGTAGCATTGACAGCGGGCTTCAGCCAACGACCTCTG
GGTACAATCATCAACGTAGCGGGTCACAGCAACAACGCAACACGACATCG
CCCCACCATTGATCAATTGTTGGGTATCTTGCGTGCAGAAGGGGCCATTC
GAATTGTGATAGGATATCCACTCTTCCGCGACGGAACTTTAAGCCCTCAG
GCAAACGCGACTAAGGTATTTGCCCGTATGGTCGCAGATCGCGCCTTGGA
AACGGGTGTTATGGCGTCGGATAGAACCCCATTTGTGTATTTATGGGACG
AGCGCTTGACCTCGCAGGCCGCAAAAGTGAACATAAAGACAAAATCGTTC
TTGCACAGCTCTGATGACGTGGATTCTCAAGCAGCTTGTCTTATCTTGGA
AGACTTTTACAGACATAAAGGTTACAAAGCGGAGGTAGTGTGGCCAAATC
CCTCAATCTTAGGCGAGAAAACCACCATGGGAGCGACAAATGGGACTCCG
CCAGCTGAAAGACGTCCTTTATCAGGGAGACGCAGAAATGATGACGTTGT
CTTTTCACCCAATGTCGCATTCACAAGTCGAGCCAATTTCTCGTACGACG
AATGGAGACGGGCTGAACTTTTGCGCTACGGCCGAGAGTTTCCTGTTGTG
TCCCCATCCCATTCTAAAGACAGCGAAAATGGTGCAGGTAccggaaagaa
gaaaaagaagaggaagaaaaagaaataa

Synonyms

Publications