rna6738, rna6738 (mRNA) Nannochloropsis gaditana

Overview
Namerna6738
Unique Namerna6738
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length561
Alignment locationCM002469.1:385293..387215 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100027g47.169.mrna
Orig protein idgnl|cribi|Naga_100027g47.169
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:385293..387215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100027g47gene6515Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6738rna6738-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23991.1cds6722Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6738 ID=rna6738|Name=rna6738|organism=Nannochloropsis gaditana|type=mRNA|length=561bp
ATGGCTGAATCCAGAGAAGGTGTAAGTGAGGAACTACAGATGGTGGAACA
TAAATTAGGCGAGCATCAGCGTCGATTGGGTGCTTTGATGGCCGGGGGAA
AAAAGTTGTGGGACCACTGGGCGAGCGAAGCATTTCCCTGGTCAAACAAA
GTGCTGAAATTGGAAGATGGGGTTTTCGGTATCTCTGTACCGTGGCGGTG
TCATCAAAAGGAAATCATAAACGCCACAATGGCTTGCGCGGATACATTTG
TGATCATGCGCACAGATGGCGGAAAGAGTCTCTGTTCCCAGCTGCCTGCG
TCAATGCCAGGAAAGGGTGTCGGCATTGTCATATCTCCCCTTCTTTCACT
TATATCTGACCAAGTGTATAGCCTTGAAACAATTGCTCCCGGAGGAAGTG
CCATGTTGGCTGGAAGTGCGACGAGTGAAGAATCTGGGCAAGTATTTCGT
CGAATGGAAGACCCGCGACGTTCCCTGAGACTTGTTTATGTGACGCTGGA
AAAGATAATCAAGAGCAAGCTCTTTGTTTCCACACTGGAAGCCTTAAACG
ATGCACAATGA
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protein sequence of rna6738

>rna6738-protein ID=rna6738-protein|Name=rna6738|organism=Nannochloropsis gaditana|type=polypeptide|length=400bp
MLMNASVTGYMALITCQSHKMDIQCSQMRAVRSIYPINGCLGSLAAFKVQ
QGCGPLFQQMATCKKCCGQARPQHALQHRSLAAMAPEVKRFQLAKQAYAA
RVAAVRKEYIAEVQQKKEQEEAKLRAETARIKEAKRQRLLVKAEERKKNL
STFLEAQKEQRQRFQRYLAAMQEVREAYVEEVRDKQKHLIDALSAESTLW
ITSENMDEKITDDLFDVAGRCTFTPTRRSRDWHFMALPRVPDFSAYSDED
LFDEKEDVHFLTEKSPWGHDEKSTINIPEEHEFYASGPAERVPRVVTDDD
TMSSSTDGNIYFKDAAYRPSLIAAIFQGAYADFKPSQVPDKEVKLIRELA
ERYEEQLQTILHSSQDDVNAEARGTSKSPTSTIADRGGFDPKVFSKEIDG
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mRNA from alignment at CM002469.1:385293..387215-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6738 ID=rna6738|Name=rna6738|organism=Nannochloropsis gaditana|type=mRNA|length=1923bp|location=Sequence derived from alignment at CM002469.1:385293..387215- (Nannochloropsis gaditana)
AAGCCCTCGAGAGAGTCACACAGCAAACAATCGGCGCTGGCCTTGCCTGT
CCGGGCGAGGAGGTTGCTGGCGATGGCTCATCATGGCTGGTTGCGTGTGA
TGCAATTGGTACCCTCGATTCGCACGTCGTCTTCACGTCACAAATAAGCC
AACGCATACGAATACAAGCGAGCCATACGTGCCCGACACAAGCTTCGAGT
TGTTGTGGAGACATTCGATCTCTTCAATGCTCATGAATGCCTCAGTGACC
GGTTACATGGCTCTAATTACTTGTCAATCTCACAAAATGGATATACAGTG
TTCGCAAATGCGCGCTGTCCGGTCAATTTATCCCATTAATGGATGCCTTG
GCAGTTTAGCCGCTTTCAAAGTGCAGCAAGGTTGTGGTCCATTATTTCAA
CAAATGGCTACCTGCAAGAAGGTACGTCAACCTCGTAACCTTAATTTCCT
TGCAGGCTTCGCCCACGTTCGTTTCTTTGCTGTGTTGGTAATCTAGCGCT
TGAATCACTTTTTTGATGAATGCTGTCTGAATTTTCCATGCACATTATTT
GAGTCATGAAGTCATACCATTCGGTACACGCATACATGATCTCACGGAAT
GTGCGTGAAAAGCCTTGCGGTAGAGTCCATAGGACTATTACGACGATGGA
TTGTCAATCGCCTTTCCTACCCCTGGGTGGCTGATAAACGAGCGTGCTTG
TTCATAATTTTCAATTCTTTGATTCTTACGTGAATGCTTTAAGACTCCGT
CATGAAAAGGGATTTATCTTGACTTGCGGATTGTTCGCACAGTTCTAATA
TGGTGTACCTAAGTTTGCTCCTTATCTATGTTGCGTCTCTCCAGTGTTGT
GGACAAGCTCGACCTCAGCATGCGCTGCAACATCGGTCCTTAGCAGCCAT
GGCACCGGAGGTGAAGCGCTTCCAGCTGGCCAAGCAAGCCTATGCAGCGC
GAGTGGCAGCAGTGCGAAAGGAGTACATCGCCGAAGTACAGCAGAAGAAG
GAGCAAGAGGAGGCAAAGCTGCGGGCTGAGACGGCACGCATTAAGGAGGC
TAAGCGACAACGTCTTTTGGTAAAGGCAGAAGAGCGAAAGAAAAACCTAT
CGACCTTCCTTGAGGCTCAAAAAGAGCAACGTCAGCGATTCCAGCGCTAT
CTCGCGGCCATGCAAGAAGTCCGAGAGGCGTACGTGGAGGAGGTCCGAGA
CAAACAAAAGCACCTGATCGATGCGCTGTCGGCCGAGTCGACTCTTTGGA
TCACCAGCGAGAATATGGACGAGAAGATCACGGACGACCTTTTCGACGTT
GCCGGGCGATGTACCTTCACCCCCACACGCCGCAGCCGTGATTGGCACTT
TATGGCCTTACCCAGAGTACCAGACTTTTCTGCCTATTCCGATGAGGACC
TGTTTGACGAGAAAGAGGACGTGCATTTCCTCACAGAGAAGAGTCCCTGG
GGTCACGACGAGAAGTCAACGATTAATATACCCGAGGAGCACGAATTTTA
TGCTTCAGGTCCAGCCGAACGCGTGCCTCGCGTTGTCACAGATGACGATA
CGATGTCCTCTTCTACAGATGGAAATATATACTTCAAGGATGCGGCCTAC
CGTCCCAGCCTAATAGCTGCGATATTTCAAGGAGCCTATGCAGACTTTAA
GCCTTCGCAAGTGCCAGACAAGGAGGTGAAGCTCATCCGAGAACTGGCCG
AAAGATACGAAGAACAGCTTCAAACCATCCTCCACAGTTCTCAAGACGAC
GTTAACGCGGAGGCGAGGGGCACCAGCAAAAGTCCCACTTCAACGATAGC
AGACCGAGGCGGTTTCGATCCAAAGGTTTTTTCGAAGGAGATAGACGGAT
GAGTAGCGGATAGCTGAGAAAGCAGCCACTAGTATGTGTCACAAATCAAA
GAAGAAACAGAAATGATTGGGTC
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Coding sequence (CDS) from alignment at CM002469.1:385293..387215-

>rna6738 ID=rna6738|Name=rna6738|organism=Nannochloropsis gaditana|type=CDS|length=2406bp|location=Sequence derived from alignment at CM002469.1:385293..387215- (Nannochloropsis gaditana)
TGTTGTGGACAAGCTCGACCTCAGCATGCGCTGCAACATCGGTCCTTAGC
AGCCATGGCACCGGAGGTGAAGCGCTTCCAGCTGGCCAAGCAAGCCTATG
CAGCGCGAGTGGCAGCAGTGCGAAAGGAGTACATCGCCGAAGTACAGCAG
AAGAAGGAGCAAGAGGAGGCAAAGCTGCGGGCTGAGACGGCACGCATTAA
GGAGGCTAAGCGACAACGTCTTTTGGTAAAGGCAGAAGAGCGAAAGAAAA
ACCTATCGACCTTCCTTGAGGCTCAAAAAGAGCAACGTCAGCGATTCCAG
CGCTATCTCGCGGCCATGCAAGAAGTCCGAGAGGCGTACGTGGAGGAGGT
CCGAGACAAACAAAAGCACCTGATCGATGCGCTGTCGGCCGAGTCGACTC
TTTGGATCACCAGCGAGAATATGGACGAGAAGATCACGGACGACCTTTTC
GACGTTGCCGGGCGATGTACCTTCACCCCCACACGCCGCAGCCGTGATTG
GCACTTTATGGCCTTACCCAGAGTACCAGACTTTTCTGCCTATTCCGATG
AGGACCTGTTTGACGAGAAAGAGGACGTGCATTTCCTCACAGAGAAGAGT
CCCTGGGGTCACGACGAGAAGTCAACGATTAATATACCCGAGGAGCACGA
ATTTTATGCTTCAGGTCCAGCCGAACGCGTGCCTCGCGTTGTCACAGATG
ACGATACGATGTCCTCTTCTACAGATGGAAATATATACTTCAAGGATGCG
GCCTACCGTCCCAGCCTAATAGCTGCGATATTTCAAGGAGCCTATGCAGA
CTTTAAGCCTTCGCAAGTGCCAGACAAGGAGGTGAAGCTCATCCGAGAAC
TGGCCGAAAGATACGAAGAACAGCTTCAAACCATCCTCCACAGTTCTCAA
GACGACGTTAACGCGGAGGCGAGGGGCACCAGCAAAAGTCCCACTTCAAC
GATAGCAGACCGAGGCGGTTTCGATCCAAAGGTTTTTTCGAAGGAGATAG
ACGGATGAATGCTCATGAATGCCTCAGTGACCGGTTACATGGCTCTAATT
ACTTGTCAATCTCACAAAATGGATATACAGTGTTCGCAAATGCGCGCTGT
CCGGTCAATTTATCCCATTAATGGATGCCTTGGCAGTTTAGCCGCTTTCA
AAGTGCAGCAAGGTTGTGGTCCATTATTTCAACAAATGGCTACCTGCAAG
AAGTGTTGTGGACAAGCTCGACCTCAGCATGCGCTGCAACATCGGTCCTT
AGCAGCCATGGCACCGGAGGTGAAGCGCTTCCAGCTGGCCAAGCAAGCCT
ATGCAGCGCGAGTGGCAGCAGTGCGAAAGGAGTACATCGCCGAAGTACAG
CAGAAGAAGGAGCAAGAGGAGGCAAAGCTGCGGGCTGAGACGGCACGCAT
TAAGGAGGCTAAGCGACAACGTCTTTTGGTAAAGGCAGAAGAGCGAAAGA
AAAACCTATCGACCTTCCTTGAGGCTCAAAAAGAGCAACGTCAGCGATTC
CAGCGCTATCTCGCGGCCATGCAAGAAGTCCGAGAGGCGTACGTGGAGGA
GGTCCGAGACAAACAAAAGCACCTGATCGATGCGCTGTCGGCCGAGTCGA
CTCTTTGGATCACCAGCGAGAATATGGACGAGAAGATCACGGACGACCTT
TTCGACGTTGCCGGGCGATGTACCTTCACCCCCACACGCCGCAGCCGTGA
TTGGCACTTTATGGCCTTACCCAGAGTACCAGACTTTTCTGCCTATTCCG
ATGAGGACCTGTTTGACGAGAAAGAGGACGTGCATTTCCTCACAGAGAAG
AGTCCCTGGGGTCACGACGAGAAGTCAACGATTAATATACCCGAGGAGCA
CGAATTTTATGCTTCAGGTCCAGCCGAACGCGTGCCTCGCGTTGTCACAG
ATGACGATACGATGTCCTCTTCTACAGATGGAAATATATACTTCAAGGAT
GCGGCCTACCGTCCCAGCCTAATAGCTGCGATATTTCAAGGAGCCTATGC
AGACTTTAAGCCTTCGCAAGTGCCAGACAAGGAGGTGAAGCTCATCCGAG
AACTGGCCGAAAGATACGAAGAACAGCTTCAAACCATCCTCCACAGTTCT
CAAGACGACGTTAACGCGGAGGCGAGGGGCACCAGCAAAAGTCCCACTTC
AACGATAGCAGACCGAGGCGGTTTCGATCCAAAGGTTTTTTCGAAGGAGA
TAGACGGATGAATGCTCATGAATGCCTCAGTGACCGGTTACATGGCTCTA
ATTACTTGTCAATCTCACAAAATGGATATACAGTGTTCGCAAATGCGCGC
TGTCCGGTCAATTTATCCCATTAATGGATGCCTTGGCAGTTTAGCCGCTT
TCAAAGTGCAGCAAGGTTGTGGTCCATTATTTCAACAAATGGCTACCTGC
AAGAAG
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Synonyms
Publications