rna6728, rna6728 (mRNA) Nannochloropsis gaditana

Overview
Namerna6728
Unique Namerna6728
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length858
Alignment locationCM002469.1:358321..360352 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100027g35.127.mrna
Orig protein idgnl|cribi|Naga_100027g35.127
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:358321..360352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100027g35gene6505Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23949.1cds6712Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6728rna6728-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6728 ID=rna6728|Name=rna6728|organism=Nannochloropsis gaditana|type=mRNA|length=858bp
TTTCCCTGCTTATACCCAACCCTTCGTGGTACTCAACTGCTACCTACGAC
GAAAATAAAGTTCTTGGTAGCGCATGGGATGCTGACCCTGCAGTTGAGTG
CGACGGCTCTGTGGCGACTCGGTGTGTCCTCCGCCATCAGAATCCCGGCT
TCGTCGTCGCAGCCGCTTTGTTGTCTCCGTGTCCTCGCTTGTCCTCCGTC
ATGCCCACTCTATACGACCACCTCGCACAGGTACTCTTATAGTTTTTCTG
AGGCCTCAGTCAAGATGGTTAAGTTATTCACACGCTTTGTAGAGATCGGT
CGGGTGGTGCTGGTAAATTATGGTCCTGACTACGGGAAGCTAGCGACAAT
CATCGACGTTGTGGACGGCAACAAGATATTGGTGGATGGGCCGGACTCTG
GTGTTTTGCGGCAAGTCATTCCTCTGAAGCGGGTGTCTCTGACTGATTTG
AAGGTGAAGATTCCGCGAAACGCCCGCGAGAAGACCCTAAAGAAAGCCTG
GGCAACGGAGAAGATTGTAGCACGGTGGGAGCAAACCACGTGGTGCAAGA
AACTTGTGGCAAAGGCGAAGCGCGCTGCCCTCACGGACTTCGACCGTTTC
AAACTGATGGTAGCTCGCAAGGAGAAATCTGCTATCATCAAGAAACACGT
GAAGTAAAATCGAAAGCATTGTAGTGGAAAGCGGATTAATGGAGGCACGT
CGGAGGAGGCACTACAGCTGCTAAGCTTGGGGTTCAGAGGCTCTGAAAGG
GACTGACCGCTACCGTCTCGCCGTTCTCGGAGCCAGGAGTTTCGAATAGG
GGCTGTCCGGGGGAGAGAAGGGCCAAAAGAAAAAGCAACCCTTTTGCACA
AAAAATTG
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protein sequence of rna6728

>rna6728-protein ID=rna6728-protein|Name=rna6728|organism=Nannochloropsis gaditana|type=polypeptide|length=605bp
MLRPPSSTSPCFQYHRMTNAGVDEKGVVASFWHTYRVGAYITRELANDAS
LIAFELGAGFAAIVGLGVYEGTLVSRQGMDGGAIKMSQPLRYALWTALPC
AAGHILPSGAVLRNLMKVPATTTPSLISSISESAAAGPGMLKVRNLQAGR
HVVGLATLIGTTLQVGASIQRGRQFYRAQVLDGREPPLAPPDAVRISHRP
PASAGDAPAFHVVLMADAQDKLPWWGEGGRVSRAMPHRWWTRAQWITDPR
EWMGLLPSPNIASLRYTDMRPLFLEAEVSASSRPRGLSLNLALESLRAGG
RAGSRGPRVVGGGEEGVVRVLMASGECLRSPTRRMVEESGAVDLMVDGEA
AVALAALAWMEETPYASAWSALAAQRTREEEAKISARREGSSVWKGLEQW
NAWAERLPVSEAVGRPWRWLAGTWETMGRRVRWLLKGGVTARDALEEYKV
VVLVHDADAPRLSQRLKLKELLQAAGWDVWGPGTSASRLVGDRDALVPVL
VYCQDDATTLERARFLVRAGRPPQLTCALVEDPESACPWLAGGRPIVDDR
GSDTEAKPTILSVSDVHDKIFAFIRGRVKEGKSIAEVQSELDDSTGLMPS
STRRE
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mRNA from alignment at CM002469.1:358321..360352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6728 ID=rna6728|Name=rna6728|organism=Nannochloropsis gaditana|type=mRNA|length=2032bp|location=Sequence derived from alignment at CM002469.1:358321..360352- (Nannochloropsis gaditana)
GGCTGCCTGGCCGTTGACATCTTCACTTTCAAACTTCCCATTCCTTAGTT
CATGCTCCGCCCGCCGAGTTCTACCTCACCATGTTTCCAATACCATAGGA
TGACTAATGCAGGCGTGGACGAGAAGGGTGTGGTGGCGTCCTTTTGGCAT
ACATATCGGGTTGGTGCGTACATCACTCGCGAGTTGGCCAATGATGCGAG
TCTCATCGCATTCGAGCTAGGCGCCGGGTTCGCAGCAATCGTGGGCCTGG
GAGTGTACGAGGGGACGCTTGTTTCAAGGCAAGGCATGGACGGAGGCGCA
ATAAAAATGTCTCAGCCCTTGCGATATGCCTTGTGGACAGCCTTGCCCTG
TGCGGCAGGGCATATTTTGCCCTCAGGTGCAGTGCTGCGGAACTTGATGA
AGGTCCCTGCCACGACGACGCCATCGCTCATTTCAAGTATATCAGAGTCT
GCTGCTGCAGGCCCGGGCATGCTTAAGGTGAGAAATTTGCAAGCTGGACG
GCATGTGGTAGGCTTGGCGACATTGATTGGCACGACTCTGCAAGTTGGAG
CAAGCATCCAACGAGGCCGACAGTTTTACCGGGCACAAGTCCTGGATGGT
CGTGAGCCTCCACTGGCGCCGCCAGATGCTGTGCGCATTTCACATCGCCC
TCCAGCTTCTGCAGGCGACGCTCCAGCTTTTCATGTCGTTCTAATGGCCG
ATGCACAAGATAAATTGCCTTGGTGGGGAGAGGGGGGGAGAGTGTCCAGG
GCAATGCCGCACCGATGGTGGACAAGGGCACAATGGATCACGGATCCACG
GGAGTGGATGGGCCTACTGCCATCCCCCAATATTGCATCTCTCCGATACA
CAGATATGAGACCACTCTTTTTGGAGGCGGAGGTGTCAGCATCGTCTAGG
CCGCGCGGCTTGTCCCTGAACCTAGCCCTTGAAAGCCTCCGGGCTGGTGG
GCGCGCAGGCAGCCGCGGGCCCCGGGTGGTTGGCGGCGGCGAGGAAGGAG
TAGTGAGGGTACTGATGGCCAGTGGAGAGTGTCTTCGGTCGCCTACGCGG
CGTATGGTGGAAGAGAGTGGGGCAGTGGACCTGATGGTAGATGGAGAGGC
CGCGGTGGCGCTGGCGGCATTGGCTTGGATGGAGGAGACTCCCTACGCGT
CCGCTTGGTCCGCTCTCGCTGCCCAGCGGACGCGAGAGGAGGAGGCAAAG
ATCAGCGCCCGCCGGGAAGGGAGCTCAGTCTGGAAGGGTCTTGAGCAATG
GAACGCATGGGCGGAGCGCCTTCCCGTATCGGAGGCCGTCGGGAGGCCCT
GGCGGTGGCTGGCGGGAACATGGGAGACGATGGGTCGGCGGGTGCGGTGG
CTACTTAAGGGAGGGGTGACAGCTAGGGACGCATTGGAGGAGTACAAAGT
TGTAGTGCTGGTCCATGACGCGGACGCTCCGCGGCTGAGCCAGCGTCTTA
AGCTTAAGGAGCTCCTGCAGGCAGCCGGATGGGACGTGTGGGGGCCAGGC
ACGTCCGCATCGCGTCTGGTGGGGGACCGGGACGCCCTGGTGCCCGTGCT
GGTTTACTGCCAAGATGATGCTACCACGCTGGAGCGGGCGCGATTCCTGG
TCCGCGCCGGTAGGCCCCCGCAACTGACTTGCGCCCTGGTGGAAGACCCT
GAAAGCGCGTGTCCCTGGCTGGCCGGTGGAAGGCCGATCGTCGATGACCG
CGGCAGCGACACGGAGGCTAAGCCCACCATTTTGAGTGTGAGCGACGTGC
ACGACAAGATATTTGCCTTTATACGGGGCCGCGTCAAGGAAGGGAAATCA
ATCGCAGAAGTACAATCCGAGCTTGACGACTCGACCGGCTTGATGCCCTC
CAGCACGAGGCGGGAGTAATTAATGAGTATGATATACCTACTTGTACATT
TCAGTGCGTACAACAGTGACAGACAAAATCGCCGCCGGGAAATTTGGGCG
CTGGCTTGTAAGACAAAGTTAATGAGGGGCAAAAAATGGGAGTTTGCACA
CATAGACGAAATGAACTCAGAATTTTACCCCC
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Coding sequence (CDS) from alignment at CM002469.1:358321..360352-

>rna6728 ID=rna6728|Name=rna6728|organism=Nannochloropsis gaditana|type=CDS|length=1818bp|location=Sequence derived from alignment at CM002469.1:358321..360352- (Nannochloropsis gaditana)
ATGCTCCGCCCGCCGAGTTCTACCTCACCATGTTTCCAATACCATAGGAT
GACTAATGCAGGCGTGGACGAGAAGGGTGTGGTGGCGTCCTTTTGGCATA
CATATCGGGTTGGTGCGTACATCACTCGCGAGTTGGCCAATGATGCGAGT
CTCATCGCATTCGAGCTAGGCGCCGGGTTCGCAGCAATCGTGGGCCTGGG
AGTGTACGAGGGGACGCTTGTTTCAAGGCAAGGCATGGACGGAGGCGCAA
TAAAAATGTCTCAGCCCTTGCGATATGCCTTGTGGACAGCCTTGCCCTGT
GCGGCAGGGCATATTTTGCCCTCAGGTGCAGTGCTGCGGAACTTGATGAA
GGTCCCTGCCACGACGACGCCATCGCTCATTTCAAGTATATCAGAGTCTG
CTGCTGCAGGCCCGGGCATGCTTAAGGTGAGAAATTTGCAAGCTGGACGG
CATGTGGTAGGCTTGGCGACATTGATTGGCACGACTCTGCAAGTTGGAGC
AAGCATCCAACGAGGCCGACAGTTTTACCGGGCACAAGTCCTGGATGGTC
GTGAGCCTCCACTGGCGCCGCCAGATGCTGTGCGCATTTCACATCGCCCT
CCAGCTTCTGCAGGCGACGCTCCAGCTTTTCATGTCGTTCTAATGGCCGA
TGCACAAGATAAATTGCCTTGGTGGGGAGAGGGGGGGAGAGTGTCCAGGG
CAATGCCGCACCGATGGTGGACAAGGGCACAATGGATCACGGATCCACGG
GAGTGGATGGGCCTACTGCCATCCCCCAATATTGCATCTCTCCGATACAC
AGATATGAGACCACTCTTTTTGGAGGCGGAGGTGTCAGCATCGTCTAGGC
CGCGCGGCTTGTCCCTGAACCTAGCCCTTGAAAGCCTCCGGGCTGGTGGG
CGCGCAGGCAGCCGCGGGCCCCGGGTGGTTGGCGGCGGCGAGGAAGGAGT
AGTGAGGGTACTGATGGCCAGTGGAGAGTGTCTTCGGTCGCCTACGCGGC
GTATGGTGGAAGAGAGTGGGGCAGTGGACCTGATGGTAGATGGAGAGGCC
GCGGTGGCGCTGGCGGCATTGGCTTGGATGGAGGAGACTCCCTACGCGTC
CGCTTGGTCCGCTCTCGCTGCCCAGCGGACGCGAGAGGAGGAGGCAAAGA
TCAGCGCCCGCCGGGAAGGGAGCTCAGTCTGGAAGGGTCTTGAGCAATGG
AACGCATGGGCGGAGCGCCTTCCCGTATCGGAGGCCGTCGGGAGGCCCTG
GCGGTGGCTGGCGGGAACATGGGAGACGATGGGTCGGCGGGTGCGGTGGC
TACTTAAGGGAGGGGTGACAGCTAGGGACGCATTGGAGGAGTACAAAGTT
GTAGTGCTGGTCCATGACGCGGACGCTCCGCGGCTGAGCCAGCGTCTTAA
GCTTAAGGAGCTCCTGCAGGCAGCCGGATGGGACGTGTGGGGGCCAGGCA
CGTCCGCATCGCGTCTGGTGGGGGACCGGGACGCCCTGGTGCCCGTGCTG
GTTTACTGCCAAGATGATGCTACCACGCTGGAGCGGGCGCGATTCCTGGT
CCGCGCCGGTAGGCCCCCGCAACTGACTTGCGCCCTGGTGGAAGACCCTG
AAAGCGCGTGTCCCTGGCTGGCCGGTGGAAGGCCGATCGTCGATGACCGC
GGCAGCGACACGGAGGCTAAGCCCACCATTTTGAGTGTGAGCGACGTGCA
CGACAAGATATTTGCCTTTATACGGGGCCGCGTCAAGGAAGGGAAATCAA
TCGCAGAAGTACAATCCGAGCTTGACGACTCGACCGGCTTGATGCCCTCC
AGCACGAGGCGGGAGTAA
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Synonyms
Publications