rna6720, rna6720 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6720
Unique Name	rna6720
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3541
Alignment location	CM002469.1:339952..341226 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100027g26.149.mrna
Orig protein id	gnl\|cribi\|Naga_100027g26.149
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:339952..341226 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100027g26	gene6497	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23971.1	cds6704	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6720	rna6720-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:339952..341226-
coding sequence from alignment at CM002469.1:339952..341226-

mRNA sequence

>rna6720 ID=rna6720|Name=rna6720|organism=Nannochloropsis gaditana|type=mRNA|length=3541bp
TAGGTTTTGGCTCTTGGATGACGAGGATCATGCCCCATTCTTCTCCGGAG
CTCTTTATACCTGCCAGCCCTGCCGCGGACGCACCGCCATCGACCGATGT
GGACATATCATCCATGAGTCAGCTTCGCAAAAATTCTGGGCAAACACAAT
TTTCGAAGAGACCGAATTATATAGAGGCGTCAAACGCACCGCTGGCGCAG
AGGATCATTTCCCGTGATTCGCAAAACGAGGACGAAAACGGTTCAGAGAA
AAGCAAGCAGCCGCTCTCCTTCGCACACTGGACCCGACAAGCATTGGTGC
ACGTTTTGGTTCAACACAATGTCGAGCTGCGCCGGGAAGCAGAACTGCCC
CATGGCTATCTGGTCCACATCTGTAACACTTACTTCGCCAATAAGCCCGC
CCCTCTAATTCCCGAACCGTGGCCTGTGGAACTGCAGGTCTCAGCAGAGA
CTGCGGCCTGCTCGATCCAACGGGCTTGGATCCGACACGTAGCTACCCGG
CGAAAGAGGAGTATGCTGGCCCACCAAACCTCAGACCGAGCGCTCCGAGC
GGAGGGCATCCTCTCCCCTCCAGGATCCTCTGACGCAAAGGCGCTGCACG
CTGCCGCCGACTGTCCCACTCCATTAGCAGCGGGCCGCGAGCTTGAACAA
CCGTGGTATCCCCCCGACTTAGAACTTGCGCGAGACTATGCAGAATGGAA
CCATCCACGCATGGGAGGTCCTGGAGGTCCACTATTTCCGCTTTGTAAAA
CCTCGACAGGCCGGTATTGCGTGCTGGGGGGGTGCGGGGAGCAGCTAGAC
CTCTGGGATGAAGGACAGGTATCTGAATTGTCCATCTACGGCTCAAGTAT
CAGCAACTTCTTCAAATTCGAGAAGTGGTGCGCTTGGACCTCTTTGTGTC
TCTTTTTCATATATCTTCCTGTGTTTATGCTTAACACATTCGGGAGTGGG
GAGCCGGCGCATGGGACGGGGCGCCTTGTGTCCCTGGCACGGACTACCTT
GGGCAACCTCTTTCAGACGCTGGAGAGCGGGCAAGGGACGGCGGTCCTGC
CGATATGCGAGAGCCTCACACGTCAGTACCCGTCCGCAATAAATTGCACG
TTGAGTGAGGCGCAAACTGCTATGATGTTCACGCATACCGAGCTCGCTGC
TTGTATCTTCTTGTACGTCGCCCTGTCTTGGCTGCAGCTATTCCAGAAAA
AGGAATCCAAGTATTTAGACAGATACACGGTGACAGCAGGAAACTACACG
GTCCAGATCACCAACATTCCGGCCAACGTGACAGAGGCGGACATCAAAGT
TCATTTTGCTCGCACACTTAATTTGCCAGTGACGCAGGTGACTTTAGGCT
ACAACAACGCACCAAAAATTGAAAAGCACAAGCTGCGAGGCTCCCTCATG
AAGAGGCGTCATCTTGTTGTTAATCGGTGCCGGTACCTTAAACAACAGCT
AGCATGTAATGGGGTTGGCGATAATGATCGCGCGCGCAACTGTTACCAGA
AAATTGCAGATAGCTTGGAAACGGCTACGCACTGGTGGTGGAGGCGTGAG
CTACAGGGCCTGAAACAGGAAAACGCGCGACTGCTAGCGCGCCTCTCAGC
GTTGAACGCCAAACTCGGGGCTACACACGAGGAGATTAGACCGCTCTGTG
CATTTGTGACTTTTTATTCTGAGGCTGCACGCAATGAGGCACTTCGTGCG
TACGGATTAAGCCCCCTCCATTTCCTGTGCATGCCTCACGGTTTGCGTTT
GGCAGGCCATCGGCTTCGAGTAACGCCAGCCCCGGAGCCCAGCTTAATTC
TTTGGGAAAACTTGCAGTATGGACAAATGGCTCGAGTCAGACGCCAACTT
CTGACGACAATGCTGGCCGGACTGCTCATCAGTCTGCCTCTCATTTTTGC
ATTCGTCGCCCGCTACTATCAGGATCAAGGTCGACGGCAGCAGGAAGGGG
GACAAGAAGGGTCAGGAAACGGTGGAAGAGATACCCACCACGCTGAGGGC
TTAGCCGCCTTCTGGACCGTCGTGGCGACTTTTTTAACTATTGGTATTAA
CTATTTGATTCAGTTGGTGCTACAATGGATGACAGAATTCGAAAAAGCGC
ATACCGTGGACATCCAACAGTTTGGACGAAGCATGCAACTCTTTGTCCTT
AAGTCCGTCAACATGGCCGGCATCGTACTCGTTGTGAACTTCAAGGTGAT
CCAGAAATCATTGCATATTAAGATAAATGAACCCGGGAATTTTGTAAAAG
AGTGGTACTATACGACAGGCTGCAACCTGCTTCTCATAATGTTTATAAAC
GTTGTCAGCCCTCTGCTTCCAAGCCTTAAATCCTATTGTGCGCAATGGCA
TGCTCAGCGGAAAGCGGCGCGTGGTCAATTTACAGGATCCATTACCCAGA
GTGCCGCGAACAATGTCTTCATGGGCCCGGAATTCGCTATTGCTATCCGA
TACTCTTCAATATTGGTCACTTTCTTCGTCTGCTTTGTGTATGCCACCGC
CATGCCTCTTCTTCTTCTCATCGGAGCGGCGTCGTTCTACGTGGGTTACT
GGGTGGACAAATTCCTTTTTTTAAGGTTCAATCGTATTCCGCTTGAGTAC
GGCAAGGTGCTTTCGAAAGGTGCGATTAAGGTAATCCAGGTAGCTTTACT
CCTTCATGTCATCATTTCTATTTGGGCATTAAGCCAGGATGAGTTGTTTT
CCTCGTCCACTGACACCAACTCGCCCTTGGGGCGAGCGGTGAGATCGGGC
ACGGCTTGGATGCATAGATCAATTGCACGACGTTTACAAAAGGCACACAT
ACAGCCTCTCGTCATCTTGTTCCTGGTGTTGGCCATTGTCATGATAGGGC
GAGCACTCCTGAAGTCTGTTTTTACCATTCTTTGCTCTCTCTTCCGCGTA
TTTGCAAATTGTAACCGGACATGTCACACCCAAAACGACGATGAGCATAT
TGAAAAGGGGGGCTGTAAGTGCTCCTTCTTTGGGGAGGTCAATGGGTTAG
ATGAGTTTGCGAGTATCGACGTGACGTATCCGCGGGCGATCGAGCGAGGG
CTGATCAAGGGTTTGCACACGTACAATATCCTAGCAAATCCTCGTTACAA
ATCTGCTTTTCGGATCAGTGACAGGTTTGCAAAGCAGCATCGCCATGTTG
AGTCTATTCGTGGCAGCTTTGAGGCACATAGTGATGGAGAGGAAAGCGAT
GGGCAGATAGATGAAGACGAGGAGGGAGGGGTGGTTGCTGCGGAAGATAA
GTATTTGGAGTACGAATGCCACGCTAATGCCGTACCAAACGGACTGCTTC
TCGTAAGCCCTCTGCCCAATGCGCCCCCCCCTCCGCCTACTCCACACGGC
TAAGCGTCGTTGAGGTAGTGCCGCGTGCACAAACCTACAGAGAGATCAAG
TCCCTGGTGAAAAAGATATCGGTGTAAATGGAGATGTTCCCTATCATGTG
CAAAGCCATGAGACGAGCAACAGAGTCGCTGTACATGTCGAGAAAGGACG
ACACCCCAATATCGCAAAATAATATACCATATTCTTGTCGC

protein sequence of rna6720

>rna6720-protein ID=rna6720-protein|Name=rna6720|organism=Nannochloropsis gaditana|type=polypeptide|length=141bp
MASPKRKSIIMMAYSDCVWKKYADGGQIILRQRVTGGSTAARSLNSPLFE
VYHTRLAHYRRKSRLTRRPFNEERCYFQCAFANEKIFYFIFDLRAVKHPH
SRLCLRAAVPSHLNFHRGQYKQFSLPGGRNKIQKLEYNIKY

mRNA from alignment at CM002469.1:339952..341226-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6720 ID=rna6720|Name=rna6720|organism=Nannochloropsis gaditana|type=mRNA|length=1275bp|location=Sequence derived from alignment at CM002469.1:339952..341226- (Nannochloropsis gaditana)
GCCACCGCCTCTGCACGGATATCTGGCTACTTACCAAGTTCATTGATCTG
TTCTTTGAGCAGCAATCCCTCCTTCGAACGTCGTCCGCCTCTCTCAGCGT
TTTTGCTACCCTTTGAATGTGCTCTACTCCGTTCTCGCCCAACGCACACA
CGTTTATTCCCTTCAAACGCCCTGAAGTGGAATTGCCTCTCAACAAAACC
GTGGTGCTTTCGGGCATCATACTGTGTGAAATGAGCAAATGAGAAACATA
GAACACAAACGAGAAGCAAAGAATCGATGCAGGGTTCACATGATTCGCTA
TAAGTCTTCTTCTGTTTCTCTAATGTCTGTCCGTCATCATGGGGCTTCTT
TGCGTCCAATCTACGCATCAAGGCTCGTTTCGAGTTTTAGTAACTTAACG
TTTGCCGCGAAACAGAGTCCCTTGTCATAGGACTACAGGGCTTCTGATCT
CCTCAACTTAAATGAAGTGATTCAATTAGTCGAAGGTTTGCAAAATTCAT
CACGTTGATGGATAAATGGCGTGAGCACCGCTGGGAGCTTGTACATAGCA
AATTAATGCTGAAGGTCGAAATATAATACATTGCTAAGCGATCATGTCTA
TCTAAATGTCTATCTAAATGTAGCCATTTCTTTGTAATTCATAGTGGTGG
TCCTATGCCTTTTCTCGAACGCACTTTTCGCAGGATATATGAAGGCAGTG
AAGAACAAGAGTGGTCTTTCAATGGATTAAATCTGAGGTCATGGCGTCGC
CCAAAAGAAAATCTATAATTATGATGGCTTACTCCGATTGTGTATGGAAA
AAGTATGCGGATGGAGGGCAAATTATCCTGAGGCAGAGGGTTACCGGGGG
TAGCACGGCTGCACGGTCACTCAATAGTCCACTCTTCGAAGTATACCACA
CAAGGCTTGCTCACTATCGAAGGAAGAGTCGGCTTACTCGCAGACCATTT
AACGAAGAGCGATGCTATTTTCAGTGTGCATTTGCGAATGAGAAAATCTT
TTATTTTATATTTGACCTTCGAGCGGTAAAGCACCCTCATTCCAGACTGT
GCCTTAGGGCTGCCGTGCCATCACATTTAAACTTTCACAGGGGTCAATAC
AAGCAGTTTTCTTTACCTGGGGGCCGAAACAAGATTCAGAAATTAGAATA
TAACATAAAATATTAATGAGGAATCCGACACACATGACCTCCCAACTACA
AAGTGTACTGTAGATATGCCAATTCTGTGCATTCTGTGCTAAAAAAGAAG
ACACGCGGATAGACTTGTTGTCCTC

Coding sequence (CDS) from alignment at CM002469.1:339952..341226-

>rna6720 ID=rna6720|Name=rna6720|organism=Nannochloropsis gaditana|type=CDS|length=426bp|location=Sequence derived from alignment at CM002469.1:339952..341226- (Nannochloropsis gaditana)
ATGGCGTCGCCCAAAAGAAAATCTATAATTATGATGGCTTACTCCGATTG
TGTATGGAAAAAGTATGCGGATGGAGGGCAAATTATCCTGAGGCAGAGGG
TTACCGGGGGTAGCACGGCTGCACGGTCACTCAATAGTCCACTCTTCGAA
GTATACCACACAAGGCTTGCTCACTATCGAAGGAAGAGTCGGCTTACTCG
CAGACCATTTAACGAAGAGCGATGCTATTTTCAGTGTGCATTTGCGAATG
AGAAAATCTTTTATTTTATATTTGACCTTCGAGCGGTAAAGCACCCTCAT
TCCAGACTGTGCCTTAGGGCTGCCGTGCCATCACATTTAAACTTTCACAG
GGGTCAATACAAGCAGTTTTCTTTACCTGGGGGCCGAAACAAGATTCAGA
AATTAGAATATAACATAAAATATTAA

Synonyms

Publications