rna6716, rna6716 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6716
Unique Name	rna6716
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1102
Alignment location	CM002469.1:326135..329684 +

Link to JBrowse

Properties


Property Name	Value
Product	pstvd rna-biding virp1
Orig transcript id	gnl\|cribi\|Naga_100027g22.121.mrna
Orig protein id	gnl\|cribi\|Naga_100027g22.121
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:326135..329684 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100027g22	gene6493	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6716	rna6716-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23943.1	cds6700	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:326135..329684+
coding sequence from alignment at CM002469.1:326135..329684+

mRNA sequence

>rna6716 ID=rna6716|Name=rna6716|organism=Nannochloropsis gaditana|type=mRNA|length=1102bp
GTGCCGAGGAGGGGAAAACCTGGAGAAAATTTTGATGTCGGTGGGATGGA
TGAGAGAGAGAGGGCTGATTATTCACTGAGGAGGAAGAGGTCATTTTTGG
GAAGTAGTACTCCAGGAGACCCAAAAACGCATGGACGCTTCGGCCTGCCT
GGTTTCCCGTTCCAACCCTCAGAATTGAGTCAAACTTCCCGTTGCATGCG
CCGCAGTGTGGCATGATTGTAAATGGAAGGACTTGGCTGTGGACGGCCTG
AGGCTGTCTCCACGTCGGCTTCAGTCAGGGAGCGACGAACTCTAAACCAG
GCCCGGCCACACCCCTACTTCCAAGCACCGCATTCCCCGCACTCAAAACG
ATTCATCGTCGGCAATCAATTGCAACGTGTTCCTATACTTCACTTGTGTA
CGGCCATATCAGAGTGGGCTCGTCGAGTGCCATCTCCCAGACTGACTTCG
TACTTCTTTTCCCTCTCCTTCAAACAAAGCGACGCGATTCCCTTTTCCGC
AACTATGGCAACCACTGAGCCTAAGGTTGCTGCCAAGGATGACGCGGCTC
CATTGCTGGATGTTCTTGAGGAAGACGACGAATTTGAGGAATTTGCGGAT
CCAGATTGGGACGCGGTTGTTGACGAGGCGCAAGACGAGCAGCAGTGGCA
GGTAAGCTTATTCCGATTCAGCCTTCGGCAAGGTGCACGTGTGACGGTGC
CTGCGCTATCCGAATCAGATACCTTGTCGAGTCAATGAAAGTCTAGCGTT
CTGAGACGAATGCAAGCGTGGGCTTCGACGTTCTCACTCCGGGGATGTCG
AGGGCATCGATGGCCCTTTTGATCCAGGCATGTTCTTCACGCCGTCTCTC
CCACATCGATTGAACGCATGCGCGGGACAGGACGATTGGGATGACGATAA
AGCGGACGACGAGTTCTCCAAGCATCTGCGTCAAGAACTCGAGAAACATG
GAGGCTGATTCGGGAGTTGGCTTGGCGTTGCGGGGAGCCCGTACCAGGGA
CCACAGGAGCTCGCGGGCGATGTCTGCCCGCATGGCTGCAGTTGACTTAA
GCTTGTTCCATACAAAGAAAAAATAAGCAAAAATGACATATGAGTCTCGA
CT

protein sequence of rna6716

>rna6716-protein ID=rna6716-protein|Name=rna6716|organism=Nannochloropsis gaditana|type=polypeptide|length=600bp
MGGNGANRVISEKMARRCWQMLKDLKDRGQQACNWFLRPVTEEEAPGYFQ
VIENPMDLATVDKKLRHKLHRDLHDFAADVRLVFTNAMRFNPAESSVYLD
AQKLMGIFNDMYRKACADLKTNQSDAGSLASSVSSGGGIGKAGAGRKKAE
PVGPRAGMAMAPQHASQAFREPGADANPLATAMVEKYKNEMNIALTQLVK
MERENTVLRAKLASAQKRSEELEREVAELRGGAAGGQGAGATSAQAAAET
EPVTKEERDRLVTYVQAIADSGNEELARNLTELIKQHHPPFGEGGNYSIN
VYAYDDETVRALLAYCEPLFETEVEGEEGEDREAGSAKEQEQALAAGDED
GAREELSGQENGHVPQQEKRDRPEEVEREGGEKRQRTSSTDMEGAGGGEA
SAILETGAERSGEGQDLEGEMEKAEVKMDDMEDEEAAAADEEEAGNDEDT
GGASTLQKWLAPGATATQEGEAGGDEDAQDGEGKVGEGGVGGSGAEGNIA
GDEGGMEKNDLWDAARQMKEEELKREKERATEEAERQQALLREEEKRKAE
LAEEEERLRKERQEKEEAEKRRVEEEAAKKAREIREAREKARLDRQREEG

mRNA from alignment at CM002469.1:326135..329684+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6716 ID=rna6716|Name=rna6716|organism=Nannochloropsis gaditana|type=mRNA|length=3550bp|location=Sequence derived from alignment at CM002469.1:326135..329684+ (Nannochloropsis gaditana)
ACTGAAGCCGACGTGGAGACAGCCTCAGGCCGTCCACAGCCAAGTCCTTC
CATTTACAATCATGCCACACTGCGGCGCATGCAACGGGAAGTTTGACTCA
ATTCTGAGGGTTGGAACGGGAAACCAGGCAGGCCGAAGCGTCCATGCGTT
TTTGGGTCTCCTGGAGTACTACTTCCCAAAAatgacctcttcctcctcag
tgAATAATcagccctctctctctcatccATCCCACCGACATCAAAATTTT
CTCCaggttttcccctcctcggcacATCCTGCCTCAATAATTATGGAGGA
TGAAGATCGCACGGTAAGCTAGGGCTTGTCGGGAAGGGTTTTGACTTCAC
GGCGCAGGGTTAGACGTCACTCATTGGCTTCCATCCCGACCTCCCTGGGA
AATTGCACGCGGACGTGCGGCACTTCCATCACCCACAGCACACCTCGTTG
GATGAGAGCGGGATCGTCTCAGGCGGAGAAAGTGTGATATCGTCCGTGAg
tcggcctccctccacactGCCGCCCGAGGGCACAGGGCCTGCCGGGGTGC
CGtcctcgaccgcctccactgcctcaGCTGCAACGAAAAGCGGCGCAGGA
CGCGCAGGAGGGCGACACAAGGAGCCGCTCGATTTGACGGATTTAAAAGA
AGGCAGAGTGGAAGGTGCGCCGTACTTAAAGGGCGAGCTACAGCGAGACG
TGCAGGGAGACCACATTTTCAAAGGCGCTTGGGCCATGAGCTATGCGGGC
TTTCATGGACCGGACGCCGTCACGAGCGAGTTCGAGCTCAAGCACAAATC
CCTTGACCCCGACGACACCGAGATATTTCCATTCGGGGGGGCGTACTCCG
GGTGGTACAAGTTGAAGGAACAAGGCGGGCGAAAGGACATGAAGcacgag
gagcgggaggtgcAGCTCGCATTTCAGCGCAATTCCGCTGGGGGCTACAA
CGTGGAAGGGCTAGGCCGAAACCAGTACGGGCAGTACAAGATCAAAGGGC
TTTTGACGGAGGTGAAGACAGACACGGCATTGTGCGAGATCTTCCGCATC
TACCAACCCGTGgcggcgcctccccctcagcctcgtgccccgcccgcccc
ccccatccactcctcagcggcggcggcggcgggaagaCGATCGTCCAATT
CAAAGAGCGTGCCATTTCCACATACAGGGACAGATGCGAGCAAATCTCAA
CCACCACCGGCGCAACGACCGGGTGTGCCGACTGCCCGCGCTGGCTCTGG
AAGTGCCGCTCCCTACGCGCCCATGGGAGACTCCTCCCATGGCTTGGGGT
CGGCGAgaggcggagctggggaGCGCGCGGCTGCCGCTAAGAAAAGAGCT
TCGTCTGGGAGCatgggtggtggtggagtgggggggggggggggttgtcG
CGCAAATCgacaggcggggcgggggcaggagggaggggtgttGGTGCGAT
GGGCGGAAACGGAGCGAACCGGGTCATCTCGGAGAAAATGGCCCGTCGAT
GCTGGCAGATGCTGAAGGACCTGAAAGATCGGGGCCAGCAGGCGTGCAAC
TGGTTTCTGCGGcccgtgacggaggaggaggcacccGGATACTTCCAAGT
GATCGAAAACCCGATGGACCTGGCGACCGTGGACAAGAAGCTCCGGCACA
AGCTGCACCGAGACTTGCACGACTTTGCCGCGGATGTCCGCTTGGTCTTC
ACGAACGCCATGCGGTTCAACCCCGCCGAGTCGTCGGTGTATCTGGATGC
CCAGAAGCTGATGGGCATCTTCAACGACATGTACCGGAAGGCCTGCGCGG
ACTTGAAGACGAACCAGAGTGATGCTGGCTCCCTAGCCTCCTCGGTAAGC
TCGGGCGGAGGCAtagggaaggcaggggctggCAGGAAAAAGGCCGAGCC
GGTGGGGCCGAGGGCAGGCATGGCGATGGCGCCGCAGCACGCTTCGCAGG
CCTTCCGGGAGCCGGGGGCGGACGCGAATCCTTTGGCGACGGCGATGGTG
GAGAAGTACAAGAACGAAATGAACATTGCCTTGACGCAGCTGGTGAagat
ggagagagagaacaCGGTCTTGCGAGCCAAGCTGGCCTCGGCCCAGAAGC
GAAGCGAAGAGCtggagcgggaggtggcTGAGCTTCGCGGCGGGGCAGCA
GGCGGGCAAGGCGCAGGGGCGACCTCGGCGCAAGCGGCGGCAGAGACGGA
GCCCGTGACCAAAGAGGAGCGGGACAGGCTTGTGACGTATGTGCAGGCCA
TCGCAGACTCGGGCAACGAGGAGCTGGCCAGGAACCTGACAGAGCTGATC
AAGCAGCACCACCCGCCCTTCGGCGAGGGTGGGAACTACTCCATCAATGT
CTACGCATATGACGACGAAACTGTCCGGGCGCTTTTGGCATACTGTGAGC
CTTTATTTGAGACGGAggtagagggagaagagggagaggacagagAGGCA
GGGTCAgcgaaggagcaggagcaagctCTTGCTGCCGGGGATGAAGACGG
TGCCCGGGAAGAACTCTCCGGCCAAGAGAACGGTCACGTCCCTCAGCAAG
AGAAGCGGGACAGGccggaggaagtggaaagagaggggggcgagaagcGC
CAGAGAACGAGCAGTACCGatatggagggggcgggcgggggagaagcttC
GGCAATTTTGGAAACGGGGGCAGAGAGGTcaggggaagggcaggatttgg
aaggggagatggagaaagcggaggtgaagatggacgacatggaggacgag
gaggcggcggcggcggatgaagaggaagcaggcaatGACGAGGACACAGG
GGGGGCCTCAACCCTTCAAAAGTGGTTAGCCCCGGGAGCCACGGCCacgc
aggaaggggaggcaggaggggatgaagatgctcaggatggagagggtaag
gtgggagaaggaggggtcggagggagtGGGGCAGAGGGCAACATTGCCGG
TGatgaggggggaatggagaAAAATGACCTGTGGGACGCTGCGAGGCaga
tgaaagaggaggaattaaagcgggagaaggagcgagctacggaagaggca
gagcggCAGCAGGCTTTgttgcgagaggaggagaagagaaaggcagaGCT
tgcagaagaagaggaacggcTGCGGAAAGAGcgccaggaaaaggaggagg
ctgaaaAACGacgcgtggaagaggaagcggcgaaGAAAGCAAGGGAGATA
CgtgaggcgagggagaaggcgcgtTTGGAtaggcagagggaggaaggctg
agGAATAAGGgctggatggggagggactTTCCTTTTAGAGCTGTTTCTTC
CCGAAAACATGACCAAGCCTTCGTCCTGGATTCATGTCAGTAGGTCAACC
TCTGTGTGTGTGCTGATTAATGTGTTGTGCAGACATGAGGGTGTTGAATT
CTCTTCAGTCTCGGCGCTCATGAAGTGATATGACAGTCGGGTACGCTTTT
ACAGCGTCGGCTCTGCCAGCAGACCGACGATTTGTGGCTGACGATGGACC
CAACGTAACGAAAAGgaattcaaaatttcaagGCACTCGAGTGTTTCAGG

Coding sequence (CDS) from alignment at CM002469.1:326135..329684+

>rna6716 ID=rna6716|Name=rna6716|organism=Nannochloropsis gaditana|type=CDS|length=1803bp|location=Sequence derived from alignment at CM002469.1:326135..329684+ (Nannochloropsis gaditana)
ATGGGCGGAAACGGAGCGAACCGGGTCATCTCGGAGAAAATGGCCCGTCG
ATGCTGGCAGATGCTGAAGGACCTGAAAGATCGGGGCCAGCAGGCGTGCA
ACTGGTTTCTGCGGcccgtgacggaggaggaggcacccGGATACTTCCAA
GTGATCGAAAACCCGATGGACCTGGCGACCGTGGACAAGAAGCTCCGGCA
CAAGCTGCACCGAGACTTGCACGACTTTGCCGCGGATGTCCGCTTGGTCT
TCACGAACGCCATGCGGTTCAACCCCGCCGAGTCGTCGGTGTATCTGGAT
GCCCAGAAGCTGATGGGCATCTTCAACGACATGTACCGGAAGGCCTGCGC
GGACTTGAAGACGAACCAGAGTGATGCTGGCTCCCTAGCCTCCTCGGTAA
GCTCGGGCGGAGGCAtagggaaggcaggggctggCAGGAAAAAGGCCGAG
CCGGTGGGGCCGAGGGCAGGCATGGCGATGGCGCCGCAGCACGCTTCGCA
GGCCTTCCGGGAGCCGGGGGCGGACGCGAATCCTTTGGCGACGGCGATGG
TGGAGAAGTACAAGAACGAAATGAACATTGCCTTGACGCAGCTGGTGAag
atggagagagagaacaCGGTCTTGCGAGCCAAGCTGGCCTCGGCCCAGAA
GCGAAGCGAAGAGCtggagcgggaggtggcTGAGCTTCGCGGCGGGGCAG
CAGGCGGGCAAGGCGCAGGGGCGACCTCGGCGCAAGCGGCGGCAGAGACG
GAGCCCGTGACCAAAGAGGAGCGGGACAGGCTTGTGACGTATGTGCAGGC
CATCGCAGACTCGGGCAACGAGGAGCTGGCCAGGAACCTGACAGAGCTGA
TCAAGCAGCACCACCCGCCCTTCGGCGAGGGTGGGAACTACTCCATCAAT
GTCTACGCATATGACGACGAAACTGTCCGGGCGCTTTTGGCATACTGTGA
GCCTTTATTTGAGACGGAggtagagggagaagagggagaggacagagAGG
CAGGGTCAgcgaaggagcaggagcaagctCTTGCTGCCGGGGATGAAGAC
GGTGCCCGGGAAGAACTCTCCGGCCAAGAGAACGGTCACGTCCCTCAGCA
AGAGAAGCGGGACAGGccggaggaagtggaaagagaggggggcgagaagc
GCCAGAGAACGAGCAGTACCGatatggagggggcgggcgggggagaagct
tCGGCAATTTTGGAAACGGGGGCAGAGAGGTcaggggaagggcaggattt
ggaaggggagatggagaaagcggaggtgaagatggacgacatggaggacg
aggaggcggcggcggcggatgaagaggaagcaggcaatGACGAGGACACA
GGGGGGGCCTCAACCCTTCAAAAGTGGTTAGCCCCGGGAGCCACGGCCac
gcaggaaggggaggcaggaggggatgaagatgctcaggatggagagggta
aggtgggagaaggaggggtcggagggagtGGGGCAGAGGGCAACATTGCC
GGTGatgaggggggaatggagaAAAATGACCTGTGGGACGCTGCGAGGCa
gatgaaagaggaggaattaaagcgggagaaggagcgagctacggaagagg
cagagcggCAGCAGGCTTTgttgcgagaggaggagaagagaaaggcagaG
CTtgcagaagaagaggaacggcTGCGGAAAGAGcgccaggaaaaggagga
ggctgaaaAACGacgcgtggaagaggaagcggcgaaGAAAGCAAGGGAGA
TACgtgaggcgagggagaaggcgcgtTTGGAtaggcagagggaggaaggc
tga

Synonyms

Publications