rna6711, rna6711 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6711
Unique Name	rna6711
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2268
Alignment location	CM002469.1:318054..319462 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100027g17.163.mrna
Orig protein id	gnl\|cribi\|Naga_100027g17.163
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:318054..319462 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100027g17	gene6489	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6711	rna6711-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23985.1	cds6695	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:318054..319462-
coding sequence from alignment at CM002469.1:318054..319462-

mRNA sequence

>rna6711 ID=rna6711|Name=rna6711|organism=Nannochloropsis gaditana|type=mRNA|length=2268bp
ATGCCGGTGGAATCGACCATTTCGTCTGCTCTTGCGGTTTCCGCATCCTA
TCCTAAATCCTTAGAGGCTTGTGCAAAATTGCCAGCAAGGCCATTTGATG
ACAGTTTCAGTGGCGAGGATGTGAGTGACTGCCACTCCCCGGGTATCAAT
CCCTGTCTCAGTAATGGATGGGAACGATTTCGACTTCGGCTTGCTCAACG
GACGGCTCGTCGAACCCTTCTGGACGCCAAATCGACGACGGTGACATCGT
CAAGCACTGTGACGGACCTGAGCTTTGGCAGCGGCGTCAGGCATCGCCAT
CATAGCAGTTCTTGGAGCCCCAACTTTGGTGAGGGGAGGGCCAGAAGGAC
GCGCTTTGCGTTCGCCTACAAGCGAGAAAAAATGTTAACGCATGAACGCC
TTCACCGATCACTATTATGTGGCCGCGTGTCTGCCCAATCTTTTCGGAGG
CAGTGCCTTCGTGCGTGGGAACACGGCCAAGCCATTACAGGCAGCTTCAG
CCAAAGTTTCGGCAACGGCATCGACGCGTTTACATACACAAAAAGAGAGT
CTACTCTCTTTTCACGCTCTAACTCTAGTCTCCCTGGTAGTACTCTTGCA
CCTGCTGCCTTTCTGTCCCGAGTCGGAGAGGCTTGGTTCCTGCGACGGTG
GCTGGCCTGCTGGCAGCGTCGGGGGCGGCGTTACCACCAGTTGCAGATTG
CGGGGCGTTTTAGTGATCGCAACATGAGCCATTTAGCGCTAGCAAATCTG
TTTCTATATCGGGGTCGACGCCGGCGAGCACGTATGGCTGAGCAGAAAGG
AGACGCCTTCCATGCGCGGCGTCTGCTCTCGTGCTGGGACTTCTTGGCAA
GAGAACGCCTCAGGCAACAAAAGATGACCCCTTTTCGTCAAAGCGCTATC
GCAGCCGATGCATCATCCCTTAATGTGACGCCTCTGAATACGTCCTACTC
AAGTTCGCTCATCGATGCATGTCCGTTCACGCGGAGCCCGGGTGCGGTAG
AGAGTATCGGGGACAAGGCCGACCTCCTCTCCACATTGTGCACGCTAAGG
CCACCGCCCGAACTGCGTCTTCTGTTGAACCGGGCTATTGCTGCCTTGGA
GAGCTATCAATCTCGGAAGTGGAGGACCAGGGTGGACGACGAGCGTGCGC
GCAGATTTCTTTGCGGCAAGACAATGATGACATGGGCCGCTCGGACTCAG
GTCCGAGCTTGGCTAGCGCAGAATGAGCGATTTGCTGCGAAGTTTTACAG
CAGCCAGCGTCTGATGAAAGCCTGTAGGTGCATTTTCCGCCGGAAGCGAT
TCATGAAATTTCAAGCTCTGTCGATGCGTATGGCACACATAGTTTTCGCC
CGCAGGCGTGCAACCATCGCCCTCTGGCGCCTGAGCTTGTTGACCCGGCA
ACGAAAGTTCCACGCGGATGCCAAGCAAGTGATGTTCCAGTCGCAGAGAC
TTCGCGCAGTGACACGAGCTATGTCTCTGCTCCACATTCCAGCAGCACGG
ACGCTCTGCTACCTGCACAGTTACACTCGCGCCCATCAGCTGAAAAGCTT
TCAACGGGCTATACGCGCCTGGCATAAACGAGCTGTAGCACGGAGGCTTC
AGCGAAAAGCACAGGAGAAAGTCATGGCAAGAGCTCAAGATGAAAGGGTC
CTTGGTCTCAAGCTTCAGCGCTGGCATAGATGGATGACCTGTCAGCAATG
TCAGAGAGAGGCATGGAGAAGGGGGAGGTCGCACTTCAATTCTCGACTTG
TGCGTGAGAGCTTGCGTTTCTGGGCCCGGCAAGCCAAGCTCAAGGTCTGT
ACCTCCTCAATGGGGCGCCGCAGGCTTTTAAGTCGCCATCTCCTTGCCTG
GGCGAAGACAGTGAGTCGCCAAGGAGAGTTGCGGGCCATGGAGCTCGCCT
TGGCATGCCGGCATGAATTACTCGTGCAGCAACGTGTGTTCGACAAATGG
TACGCTAGCGCATGGCGCCAAGCACAAATACGCAAAGCTTGTCTAGCTGT
TGCCGCAGAGCACCATGCCCATGAAATGAGAGAAATCCTGCAACAATGGC
GGCGCAATGCGAAACTACAAATTTATGTAAAAGAGCGATTGCTTGCGTGC
ATGTACGAATGTCTGACTTCTTGGATGCTTTCCATTCAATCGAAGCGGAT
GGAGCGATGTGTTTGGATGGAAGGTAAAGTGCACAACGAGCAGCAACAGA
AGCGCTGGGCGTTGAGGCGCTGGAGCGCTAGGTGGAGACTCAACGAAAAA
AAGCCCGATGGCAACTGA

protein sequence of rna6711

>rna6711-protein ID=rna6711-protein|Name=rna6711|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MCQSGRLLEVLRSALCFRDSGSHIRRYVVHHAVQQYVEEQQAQQEQLLEP
GSISQAGAEDMETEGMRGAKRAALQAYESRAEDDEDELYVLKGTFSLAKC
LALPPGKFIRRCTRGPSIDIFANAKQPWGYRDVLSKEWGEVVRESSPHFD
RRAYIPTLNIDTESTDGRASLGRGLYRWGHPCSSMTKARWGYERPRPMCG
MRAEEEGTTGELYGDSHTKKW

mRNA from alignment at CM002469.1:318054..319462-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6711 ID=rna6711|Name=rna6711|organism=Nannochloropsis gaditana|type=mRNA|length=1409bp|location=Sequence derived from alignment at CM002469.1:318054..319462- (Nannochloropsis gaditana)
ATGTGCCAGAGCGGCCGACTGTTGGAAGTGCTGCGGAGCGCCCTCTGCTT
TCGGGACTCGGGCTCGCACATTCGCCGGTACGTCGTGCACCATGCCGTGC
AGCAGTATGTGGAGGAGCAGCAGGCGCAGCAAGAGCAGCTGCTTGAGCCT
GGAAGCATTTCGCAGGCAGGCGCGGAGGACATGGAAACGGAAGGGATGCG
GGGGGCGAAGCGGGCGGCCCTCCAGGCCTACGAGAGCCGGGCTGAGGACG
ACGAGGACGAGCTCTACGTCTTGAAGGGCACTTTTTCTTTGGCCAAGTGC
CTCGCCCTGCCCCCCGGAAAATTCATCCGTCGGTACCTGGGCGTCGTCCA
GGGCCTGCCCTGCTTCCTCGACTTGGAGAGGTCCCTGCTGGAGGGCGCCT
CGATGGGCACGGATGGGGGCCGTGCTGCGGGGGGGCGGGAGGGTCCAGTC
CCACCGCGGAGGGAGACCCTCGGCCTCTTCTTGGGGATCTGCAATTCGGG
CAACGAGCGGGGGTTGAGTGAGGGAGGGGCGGGCGCCGGTAGCAGCAGCT
GTGCTAGCAAGAGTGGAGGCAGGAGTAGGCTCAGCCCGGCAGTGGTGCCG
TTGGGATGCCTGGTTCGATATGACATCACTGTCGGTAGCTGTACGCGCGG
TCCGAGCATTGACATCTTTGCCAACGCCAAGCAGCCTTGGGGCTACCGAG
ACGTGCTCTCGAAGGAATGGGGGGAAGTGGTGCGAGAGAGCAGTCCACAC
TTCGACCGACGAGGTCGAATGGAGGTGGTGGCCAGATTGCGATTCCTCAG
GGACGGACGCGTGCTCCCCTTTTTTGAAGACGGGCAGGAAGAGGAGGACG
AGGAGAGCTCTGACGATGAGGAGGAGGGCCATTTCGAGGAGGACATAAGC
GAGGATGGGGGGGAAGAGACGGAGGGGGGCGAGGAGGAAGAGGAGGATTC
CGATCAAGAGGAGGAAGCGTTCATGGGGGTTATTTTGGAGGGAGGGGGGC
TGAGCGAAACGACATCAGGGGATGGAATTGTGGCTGAATCAGGGGTAGAA
ATTTCTCCGAAAGGGGGCAGCCGGCTGTCGCTCCCTTGGTCCTTGGGGGC
CTGGGATGACTCGAATCAGACTAGCAGTGAGACGTGAACGATTAAAGAGT
AAGCATTAAGCGAAGAAAATTATCTCTTTGGCTGAGAACAAGTACTTAAG
CATATATACCCACATTGAACATCGACACGGAGAGTACGGACGGACGCGCT
TCTCTGGGAAGAGGGTTGTATAGGTGGGGTCATCCCTGCAGCAGCATGAC
TAAAGCTCGGTGGGGGTATGAAAGACCAAGACCAATGTGCGGAATGAGGG
CAGAAGAAGAGGGAACAACCGGCGAACTGTACGGAGATTCCCACACCAAG
AAATGGTGA

Coding sequence (CDS) from alignment at CM002469.1:318054..319462-

>rna6711 ID=rna6711|Name=rna6711|organism=Nannochloropsis gaditana|type=CDS|length=1998bp|location=Sequence derived from alignment at CM002469.1:318054..319462- (Nannochloropsis gaditana)
CATATATACCCACATTGAACATCGACACGGAGAGTACGGACGGACGCGCT
TCTCTGGGAAGAGGGTTGTATAGGTGGGGTCATCCCTGCAGCAGCATGAC
TAAAGCTCGGTGGGGGTATGAAAGACCAAGACCAATGTGCGGAATGAGGG
CAGAAGAAGAGGGAACAACCGGCGAACTGTACGGAGATTCCCACACCAAG
AAATGGTGACTGTACGCGCGGTCCGAGCATTGACATCTTTGCCAACGCCA
AGCAGCCTTGGGGCTACCGAGACGTGCTCTCGAAGGAATGGGGGGAAGTG
GTGCGAGAGAGCAGTCCACACTTCGACCGACGAGATGTGCCAGAGCGGCC
GACTGTTGGAAGTGCTGCGGAGCGCCCTCTGCTTTCGGGACTCGGGCTCG
CACATTCGCCGGTACGTCGTGCACCATGCCGTGCAGCAGTATGTGGAGGA
GCAGCAGGCGCAGCAAGAGCAGCTGCTTGAGCCTGGAAGCATTTCGCAGG
CAGGCGCGGAGGACATGGAAACGGAAGGGATGCGGGGGGCGAAGCGGGCG
GCCCTCCAGGCCTACGAGAGCCGGGCTGAGGACGACGAGGACGAGCTCTA
CGTCTTGAAGGGCACTTTTTCTTTGGCCAAGTGCCTCGCCCTGCCCCCCG
GAAAATTCATCCGTCGCATATATACCCACATTGAACATCGACACGGAGAG
TACGGACGGACGCGCTTCTCTGGGAAGAGGGTTGTATAGGTGGGGTCATC
CCTGCAGCAGCATGACTAAAGCTCGGTGGGGGTATGAAAGACCAAGACCA
ATGTGCGGAATGAGGGCAGAAGAAGAGGGAACAACCGGCGAACTGTACGG
AGATTCCCACACCAAGAAATGGTGACTGTACGCGCGGTCCGAGCATTGAC
ATCTTTGCCAACGCCAAGCAGCCTTGGGGCTACCGAGACGTGCTCTCGAA
GGAATGGGGGGAAGTGGTGCGAGAGAGCAGTCCACACTTCGACCGACGAG
ATGTGCCAGAGCGGCCGACTGTTGGAAGTGCTGCGGAGCGCCCTCTGCTT
TCGGGACTCGGGCTCGCACATTCGCCGGTACGTCGTGCACCATGCCGTGC
AGCAGTATGTGGAGGAGCAGCAGGCGCAGCAAGAGCAGCTGCTTGAGCCT
GGAAGCATTTCGCAGGCAGGCGCGGAGGACATGGAAACGGAAGGGATGCG
GGGGGCGAAGCGGGCGGCCCTCCAGGCCTACGAGAGCCGGGCTGAGGACG
ACGAGGACGAGCTCTACGTCTTGAAGGGCACTTTTTCTTTGGCCAAGTGC
CTCGCCCTGCCCCCCGGAAAATTCATCCGTCGCATATATACCCACATTGA
ACATCGACACGGAGAGTACGGACGGACGCGCTTCTCTGGGAAGAGGGTTG
TATAGGTGGGGTCATCCCTGCAGCAGCATGACTAAAGCTCGGTGGGGGTA
TGAAAGACCAAGACCAATGTGCGGAATGAGGGCAGAAGAAGAGGGAACAA
CCGGCGAACTGTACGGAGATTCCCACACCAAGAAATGGTGACTGTACGCG
CGGTCCGAGCATTGACATCTTTGCCAACGCCAAGCAGCCTTGGGGCTACC
GAGACGTGCTCTCGAAGGAATGGGGGGAAGTGGTGCGAGAGAGCAGTCCA
CACTTCGACCGACGAGATGTGCCAGAGCGGCCGACTGTTGGAAGTGCTGC
GGAGCGCCCTCTGCTTTCGGGACTCGGGCTCGCACATTCGCCGGTACGTC
GTGCACCATGCCGTGCAGCAGTATGTGGAGGAGCAGCAGGCGCAGCAAGA
GCAGCTGCTTGAGCCTGGAAGCATTTCGCAGGCAGGCGCGGAGGACATGG
AAACGGAAGGGATGCGGGGGGCGAAGCGGGCGGCCCTCCAGGCCTACGAG
AGCCGGGCTGAGGACGACGAGGACGAGCTCTACGTCTTGAAGGGCACTTT
TTCTTTGGCCAAGTGCCTCGCCCTGCCCCCCGGAAAATTCATCCGTCG

Synonyms

Publications