rna6706, rna6706 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6706
Unique Name	rna6706
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1312
Alignment location	CM002469.1:307527..310261 +

Link to JBrowse

Properties


Property Name	Value
Product	nicastrin
Orig transcript id	gnl\|cribi\|Naga_100027g12.171.mrna
Orig protein id	gnl\|cribi\|Naga_100027g12.171
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:307527..310261 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100027g12	gene6484	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6706	rna6706-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23993.1	cds6690	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:307527..310261+
coding sequence from alignment at CM002469.1:307527..310261+

mRNA sequence

>rna6706 ID=rna6706|Name=rna6706|organism=Nannochloropsis gaditana|type=mRNA|length=1312bp
AACAGAACCACACATTTCACGAGTCTCTGCCCAAGCGGGCGTGGTGCGGG
ACATGCGGGGAGACGCTACCACGTGCTGTTACCTGAGAGGCCTCCCCGAC
AATTTGCAGGGGGCGGGCGAGCTTTTTGGCTTTTGCTGCCTCGCCTTTTT
CCCTGTCGCCTCTAACCTGGGTTTTTCCCCGAGCATGCCTCTGCCCGAAT
TCCCATCATCCTCGACTTACATTGAAGCGCCTGCCCACCGGGTGCACTCA
AAGTAGTGAAATTGTGCGACCACGGAACCAGTACTTTTCTTATCTCCCTC
ACTGACTTGCGGAATTCTGTTGCCGGCAATGATACACACTAGAATAACAG
ATAGCTTCTTCGAAATTCAACCGGCAAGATATCCCACGCAATTGGTATGG
CAATGAAAAGGCATCTGGCTTTCCTTGTGTGCCTGATGGTATCCGCTGCG
GCTTTTAAGCCGTCCACACCCTCTCCGTACCAGCGCGACCTTTCGCGTGG
CATTCGAAAGCATAATCGAGACGATGGTCCTGAGGCATCCGCCGACGATG
ACTTCACCCACGACCACGGGATGGTGGTGGTCGTCGTGAATGAGAAATGC
ACCAAGTTCTACCATGGTTTAATGCGCCCCCCGATCACGAGCCAAGCACC
AACATCTACATACGTGCACCCTGCAGATCCTTGGCGCATGAAGACTCAGC
AATTAGGCCACCCGCGTCAACGCCGAAGCAGAACGGGGCTTTACAGCACC
AATTTTGGTCCCCGTGAGGCGACGCCTGGGTCCTCCCAGCAGCCGGATCG
CGACCACTACATGCGCGCCATTGAACAGCATCTCACCCCCGCCTCCCGGG
CACTGCTTATTGGACACGGAAAGGGCAAAGGCGACGCGATCGACATTTTG
CTCAAGGACATCACCAACACCAGGCCCCAATTGGCAGAAAAAATCACAGA
AAAGATCCACGTAGATGATAGCCACCTCACTGACAGGCAAGTCCTCCAGC
TAGCCCGTCGGATTGTGTTCGGTGAAGATCCACGCAAGCCTCGTCGCATT
CATGGCCAGGCGCTGCCGCCTTCGGAATTCGGTGCGCTGGACTTCCGAGG
GTTATAAGTCACGTACCCGGCGCCTGTATGGCGACACCCTTATTGAAACG
TAGTGATAGGTACAAAAAGACTACAACTTCTCTCAAAGAGTATTGTTTGA
CGCTGTTGGCGTTGCTTCACAAAAAGCTCGACGTGTTAAAATCGATCTCG
CTTGTCTTGTCTGCGTCAAATATCCGAACATCAAAGTTATAACGACAGTT
TCTTCTAGCCGG

protein sequence of rna6706

>rna6706-protein ID=rna6706-protein|Name=rna6706|organism=Nannochloropsis gaditana|type=polypeptide|length=783bp
MLPRARQASIALTLLVGVIIPFSALTEYDGIHLGKGLLKEVTQAPCVRLF
SSQGTVGCRTRSREGATAPLYYLSGFGEDDQHEYMNLEEGVAVVMPASML
NSTVLEFLKAQSPARTRGVIVLEESKDMAADFERDSVSPDVSTPQGDGTP
SAAFTVGPDHAWNPRGSGLLNQKHDFPVVLASVDGDSTGVGAAQVKAWAQ
HNGGLRRAGPLPRYKAKFDFYFGPDSPSTRAESDLTSADCLSWRDVAGNP
APQCLPIGGQSVWGTFGGRTGLQTKPSVLLTTAMDGLSFFHERTPAANEA
VASILTLLAATSALKNASRAGALDLDAAPYNLAVAFFQADEWGFAGSRRF
ARDISPGGVDCPATVPDNSSRDGSGACVGSDGVYPSMAFKDLAEKGFVHV
LAVDQVGVLGTGGQAGSLPLTALYDKTPPTAVLDAIDRAAASMAPSQAVM
VTSLDGSGALPPSPFTSFARGTPALSGAILTGYGETFIDPRYHSHEDTAA
VLDPTALSSVAALVARAFWKLAAGPGEGAASAAELEAIGVEPAFVSDLLD
CLTRDWDCPAMKAFRDSEISNLKDYLQMSYLYTPPVPRPPTYYAGVLAPY
QGLPLVQHLDKSSHAEGVDTGIYAAWPAGQVFPVGAHDKAYVVPKPLEAF
LRAWLGHTLGQGGEDAPVACQGPSDCSDLTCDAGLSTRECVLDACVCRTA
AFYHTALDPGLAPLPEPGLFAVSDPAAPNWAEPNWEDIGLAVFPDAGSRM
EATALGVGVGVAALSVVGALVLQRSLIKHHYFD

mRNA from alignment at CM002469.1:307527..310261+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6706 ID=rna6706|Name=rna6706|organism=Nannochloropsis gaditana|type=mRNA|length=2735bp|location=Sequence derived from alignment at CM002469.1:307527..310261+ (Nannochloropsis gaditana)
AGATTATGGCCTTGGCGTAGCTCTCAACCTGTTTTTCCTCACCGATGACA
AAGACTACACTTCACAGCCGGCAGGTGTCCCGTCTTTACGGTCGCACAGG
GGGTTTTAAGCGTGATTCGAGGGCAGAAGAGACGAGATCGCCGCTGCCTC
GCTAAATTTTCACGTTTTCACTGCGACGCCCACTATGCTCCCTCGAGCCC
GTCAAGCTAGCATCGCCCTGACCTTGCTCGTAGGGGTAATAATCCCATTC
AGCGCTCTCACAGAGTATGACGGGATTCATTTGGGAAAAGGTCTCCTCAA
GGAGGTGACTCAGGCCCCCTGTGTTCGGCTTTTTAGCTCGCAAGGCACCG
TAGGCTGCCGAACTCGGAGTCGTGAGGGAGCAACTGCCCCTTTATACTAC
CTCAGCGGATTTGGGGAGGATGACCAACACGAGTATATGAATCTTGAGGA
GGGGGTTGCTGTGGTTATGCCCGCAAGCATGCTAAATTCTACCGTGCTCG
AGTTTTTGAAAGCTCAGTCCCCAGCACGCACCCGAGGAGTCATCGTACTA
GAAGAATCCAAAGATATGGCCGCAGATTTCGAGCGAGACTCCGTTTCTCC
GGATGTTTCCACGCCACAAGGCGATGGTACACCCAGTGCAGCCTTTACCG
TTGGACCAGATCACGCCTGGAACCCCCGGGGAAGCGGGCTGCTCAATCAA
AAGCACGACTTCCCCGTCGTCTTGGCGAGCGTTGATGGCGATAGCACAGG
GGTTGGGGCCGCTCAGGTCAAAGCATGGGCGCAACATAACGGTGGATTAC
GTCGTGCTGGACCACTGCCCCGTTACAAAGCCAAGTTCGACTTCTACTTC
GGCCCTGACTCCCCGTCGACTCGGGCGGAATCAGATTTGACGTCGGCCGA
CTGTTTGTCCTGGAGGGATGTGGCAGGCAACCCTGCCCCCCAGTGCCTGC
CTATAGGGGGGCAAAGCGTCTGGGGAACGTTCGGTGGGCGGACGGGCCTG
CAGACGAAGCCAAGTGTGCTTCTTACAACAGCCATGGACGGCCTGTCTTT
CTTTCATGAGAGGACCCCTGCGGCGAACGAGGCAgtggcctccatcctca
ccctcctcgcgGCTACAAGTGCCCTTAAAAATGCTTCACGCGCTGGAGCC
TTGGACCTGGATGCGGCACCCTATAACCTGgccgtcgccttcttccaaGC
CGACGAATGGGGCTTTGCGGGGTCGCGCCGCTTCGCGCGGGATATCAGCC
CTGGGGGTGTCGACTGCCCGGCCACGGTTCCCGACAACAGCTCGCGGGAC
GGGTCCGGCGCCTGTGTGGGGTCGGACGGCGTCTACCCGTCCATGGCCTT
CAAAGACCTGGCGGAGAAGGGTTTCGTCCACGTGCTGGCTGTCGATCAAG
TGGGGGTGCTGGGCACCGGCGGGCAAGCaggctcgctccctctcaccgCC
CTTTACGACAAGACCCCGCCGACGGCCGTACTGGACGCCATCGACagggc
cgccgcctccatggccccttCACAGGCCGTCATGGTCACGTCTTTGGACG
GATCGGGAGCgttgcccccctctcccttcactTCCTTCGCCCGCGGGACC
CCGGCACTGAGCGGCGCCATCCTGACGGGCTACGGGGAGACCTTCATAGA
CCCGCGTTACCACTCCCATGAGGACACGGCGGCAGTCCTCGACCCgacgg
ccctctcctccgtcgccgccCTCGTCGCTCGCGCCTTTTGGAAGCTGGCA
GCCGGTCCGGGCGAAGGCGCTGCGTCAGCCGCGGAGCTCGAGGCTATCGG
AGTCGAACCTGCCTTTGTCTCCGACCTGTTGGATTGCCTGACCCGGGATT
GGGACTGTCCAGCCATGAAAGCTTTTCGCGACTCAGAAATCTCAAACCTC
AAAGACTACTTGCAGATGTCGTACCTGTACACCCCCCCTGTCCCGCGCCC
CCCCACATACTACGCGGGCGTGCTTGCTCCCTATCAGGGTCTGCCCTTGG
TCCAGCACCTAGACAAGAGCTCCCACGCGGAGGGTGTCGACACCGGCATT
TATGCCGCCTGGCCTGCAGGACAAGTCTTCCCCGTGGGGGCCCACGACAA
AGCCTACGTGGTCCCGAAGCCTCTGGAGGCCTTCCTGCGGGCCTGGCTGG
GGCACACCCTGggacagggcggggaggatgccCCCGTCGCTTGTCAAGGT
CCTTCCGACTGCAGCGACCTGACGTGCGACGCGGGCCTCTCCACGCGCGA
GTGCGTCCTCGACGCCTGCGTTTGCCGCACCGCCGCCTTCTACCACACAG
CCCTCGACCCCGGGCTTGCCCCGCTCCCCGAGCCGGGTCTCTTCGCGGTC
TCGGACCCGGCGGCTCCCAACTGGGCGGAGCCGAACTGGGAGGACATCGG
TTTGGCCGTCTTTCCTGACGCGGGCTCGCGCATGGAGGCTACAGCCCTGG
GAgtgggcgtgggggtggcggccttGAGCGTGGTGGGTGCTTTGGTGCTT
CAGCGGTCCTTGATCAAACATCACTACTTCGATTGAGGGATGGACTCTGG
CGGCATGACTGCAACCGAAGGGAGGCGTGGTCCAGTCGTGTAAGGATCAT
TGTGTACAGAGATGCAAAGCCTTGAAAGAAAATGACAACAAAGCACGCCT
GTGAAAAACCTGTAACTTCGTGCTCTTGCTTTTGAAATATTAGCGGTGGA
ACCACCGCGCCTGCCCGAGTGAGTCGTCGCTGTGT

Coding sequence (CDS) from alignment at CM002469.1:307527..310261+

>rna6706 ID=rna6706|Name=rna6706|organism=Nannochloropsis gaditana|type=CDS|length=2352bp|location=Sequence derived from alignment at CM002469.1:307527..310261+ (Nannochloropsis gaditana)
ATGCTCCCTCGAGCCCGTCAAGCTAGCATCGCCCTGACCTTGCTCGTAGG
GGTAATAATCCCATTCAGCGCTCTCACAGAGTATGACGGGATTCATTTGG
GAAAAGGTCTCCTCAAGGAGGTGACTCAGGCCCCCTGTGTTCGGCTTTTT
AGCTCGCAAGGCACCGTAGGCTGCCGAACTCGGAGTCGTGAGGGAGCAAC
TGCCCCTTTATACTACCTCAGCGGATTTGGGGAGGATGACCAACACGAGT
ATATGAATCTTGAGGAGGGGGTTGCTGTGGTTATGCCCGCAAGCATGCTA
AATTCTACCGTGCTCGAGTTTTTGAAAGCTCAGTCCCCAGCACGCACCCG
AGGAGTCATCGTACTAGAAGAATCCAAAGATATGGCCGCAGATTTCGAGC
GAGACTCCGTTTCTCCGGATGTTTCCACGCCACAAGGCGATGGTACACCC
AGTGCAGCCTTTACCGTTGGACCAGATCACGCCTGGAACCCCCGGGGAAG
CGGGCTGCTCAATCAAAAGCACGACTTCCCCGTCGTCTTGGCGAGCGTTG
ATGGCGATAGCACAGGGGTTGGGGCCGCTCAGGTCAAAGCATGGGCGCAA
CATAACGGTGGATTACGTCGTGCTGGACCACTGCCCCGTTACAAAGCCAA
GTTCGACTTCTACTTCGGCCCTGACTCCCCGTCGACTCGGGCGGAATCAG
ATTTGACGTCGGCCGACTGTTTGTCCTGGAGGGATGTGGCAGGCAACCCT
GCCCCCCAGTGCCTGCCTATAGGGGGGCAAAGCGTCTGGGGAACGTTCGG
TGGGCGGACGGGCCTGCAGACGAAGCCAAGTGTGCTTCTTACAACAGCCA
TGGACGGCCTGTCTTTCTTTCATGAGAGGACCCCTGCGGCGAACGAGGCA
gtggcctccatcctcaccctcctcgcgGCTACAAGTGCCCTTAAAAATGC
TTCACGCGCTGGAGCCTTGGACCTGGATGCGGCACCCTATAACCTGgccg
tcgccttcttccaaGCCGACGAATGGGGCTTTGCGGGGTCGCGCCGCTTC
GCGCGGGATATCAGCCCTGGGGGTGTCGACTGCCCGGCCACGGTTCCCGA
CAACAGCTCGCGGGACGGGTCCGGCGCCTGTGTGGGGTCGGACGGCGTCT
ACCCGTCCATGGCCTTCAAAGACCTGGCGGAGAAGGGTTTCGTCCACGTG
CTGGCTGTCGATCAAGTGGGGGTGCTGGGCACCGGCGGGCAAGCaggctc
gctccctctcaccgCCCTTTACGACAAGACCCCGCCGACGGCCGTACTGG
ACGCCATCGACagggccgccgcctccatggccccttCACAGGCCGTCATG
GTCACGTCTTTGGACGGATCGGGAGCgttgcccccctctcccttcactTC
CTTCGCCCGCGGGACCCCGGCACTGAGCGGCGCCATCCTGACGGGCTACG
GGGAGACCTTCATAGACCCGCGTTACCACTCCCATGAGGACACGGCGGCA
GTCCTCGACCCgacggccctctcctccgtcgccgccCTCGTCGCTCGCGC
CTTTTGGAAGCTGGCAGCCGGTCCGGGCGAAGGCGCTGCGTCAGCCGCGG
AGCTCGAGGCTATCGGAGTCGAACCTGCCTTTGTCTCCGACCTGTTGGAT
TGCCTGACCCGGGATTGGGACTGTCCAGCCATGAAAGCTTTTCGCGACTC
AGAAATCTCAAACCTCAAAGACTACTTGCAGATGTCGTACCTGTACACCC
CCCCTGTCCCGCGCCCCCCCACATACTACGCGGGCGTGCTTGCTCCCTAT
CAGGGTCTGCCCTTGGTCCAGCACCTAGACAAGAGCTCCCACGCGGAGGG
TGTCGACACCGGCATTTATGCCGCCTGGCCTGCAGGACAAGTCTTCCCCG
TGGGGGCCCACGACAAAGCCTACGTGGTCCCGAAGCCTCTGGAGGCCTTC
CTGCGGGCCTGGCTGGGGCACACCCTGggacagggcggggaggatgccCC
CGTCGCTTGTCAAGGTCCTTCCGACTGCAGCGACCTGACGTGCGACGCGG
GCCTCTCCACGCGCGAGTGCGTCCTCGACGCCTGCGTTTGCCGCACCGCC
GCCTTCTACCACACAGCCCTCGACCCCGGGCTTGCCCCGCTCCCCGAGCC
GGGTCTCTTCGCGGTCTCGGACCCGGCGGCTCCCAACTGGGCGGAGCCGA
ACTGGGAGGACATCGGTTTGGCCGTCTTTCCTGACGCGGGCTCGCGCATG
GAGGCTACAGCCCTGGGAgtgggcgtgggggtggcggccttGAGCGTGGT
GGGTGCTTTGGTGCTTCAGCGGTCCTTGATCAAACATCACTACTTCGATT
GA

Synonyms

Publications