rna6705, rna6705 (mRNA) Nannochloropsis gaditana

Overview
Namerna6705
Unique Namerna6705
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1728
Alignment locationCM002469.1:305258..307170 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100027g11.158.mrna
Orig protein idgnl|cribi|Naga_100027g11.158
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:305258..307170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100027g11gene6483Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6705rna6705-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23980.1cds6689Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6705 ID=rna6705|Name=rna6705|organism=Nannochloropsis gaditana|type=mRNA|length=1728bp
ATGTCGGCCGTGGCCATGTCGGCACAAAACAGAAGCAAGATAGGGTCTGG
GCAGGACACGTTGGACGGAGAATTTCTGGGTCTGAGCCACTCTCCACCGC
AGTTCACGCCCTCCAGCTACGAGGCATCGCATATGCAAAAGCGCATCCGC
TCTGGCAGCATCTCGGGCCGCCTCCGAAGCGCCTCCGAGCTGGAGGAGAA
GGGCCTGATTGACCGGATGCAGAAAGGGGTACTGAAAAACCTCATCATGT
CCGGAGACGAGCACTTGCTCCCGGTTTTGGATAAATTCAGAGAGGAGGGC
GACACCTCGGAGCTGCGTTCCCTGTTGAAGAGCGGCGTGCTGGAGGGGCG
GCCGAGCCTGGACCTTGAGCTCTTGATGGACGACCTGGACATGAACTTCC
TGCAGCTCAGCAGCGGGGTGATGGGAATGGGCGGGGCTCTGGGGGGGGAC
GGCGAGCATTGTCAGTTCGACATGGACGACATGGCCTCCCTGATCGCGGG
CGACCAGGCGGGACAGGGCTCGGTGGGGGCGGGATCCTTCATGGAGGAGG
AGCTGCTCTCGAGCATGGTGGGCGTGCTGGGACGGTCCATGAGCCCCAGT
CACAGCGCCTCCTTTGGCCTCTCTCCCTTTGCCGAGGAGAGCGGTTCAGG
AGGGCTGCCCGCCTTCCTGGTCGCGGTGAAAGACGAGGCCCCACCAACTC
TGGTAGGGGAGGGAGGGAAGGGGGCGCCGGTCATGAGGGGGAAGGCGGCA
GCGGCCTCAGGGGCGGCGCGCAACAACAAACCGCCATCGGGTCCGCCCTC
TGCGTCCGCCGCCTCCTCCACTTTGCAGCAGGCATCACTTTCGGTCGGCG
TCCCCCCTCCTAGGGGTTCGCGGAGGGGCAGCCACCCGGGCAGCAGGCCC
TCGGCTGCGGCTGCGGCTGCCAGCGTCGGCGCCGCGCTGGCCAGCAAGAC
CGGAGGGCCTGGTGCTTCAAAAGCAGAGTCTCAGGCAGATTCCGGCCCGA
GCGCCGGGAGTAAAAGCAACGGAAGGGCCTCGCCCGCGGTCTCGGCTTTG
GCCAGTGACGCCTTGGGGCCACAGTCCCAGCCGGGCGCCATCAATCCCTC
TGAGGCGTCGGAAAAGGCAGCTGCAGCGGCAGCTGCCTCTTCTCTAATGC
CCGTGCTTCAAGGTAACTCTCCCCATTCGAGTCCCACCGGCAGCATCAAC
ATCAGCACGGGAGCGGGAGGCGCGGAGGAGAAGCGCGATGCGAACAAGCA
CTATATTGGCGCGTATTCGCCCGAGTCGCGTCGTTTGCGCTTGGAGAAAT
TCTGGGAGAAGAAGAAAAATCGGATCTGGGACCGGAAGGTGAAGTACGAC
GTGCGCAAGAATTTTGCGGACTCTCGCGTCCGTGTGAAGGGACGGTTCGT
GAAGAAGGAGGATGAGGCGATCCTGATCGAGGTGAACACCTTGACGAGCA
GGGAGGGGGCGATGACACCGGGAGGGGGACAGGAAAATTCCTCATGCCTC
GCCTCGGGGACGGCGCCCTCCGACTCCCTGGCGACCGAGGGATTGCACAT
GGGCGTAGGGGAGGGCGCGATTCTGCCGGGTAGAGGCAGGAAGGGAAGCA
GCAGCGATCTGCTGCCGGGCTTGTTGCTGGGAAAGGATGAACTGGTGCTG
GGGGGGCACGAAGAAGACGGGATCGCGGTAGGTGTGGAGGAATTGGAAGA
CCTACTGGCTCCTTTGGATGGGTTGTAA
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protein sequence of rna6705

>rna6705-protein ID=rna6705-protein|Name=rna6705|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MAMKRHLAFLVCLMVSAAAFKPSTPSPYQRDLSRGIRKHNRDDGPEASAD
DDFTHDHGMVVVVVNEKCTKFYHGLMRPPITSQAPTSTYVHPADPWRMKT
QQLGHPRQRRSRTGLYSTNFGPREATPGSSQQPDRDHYMRAIEQHLTPAS
RALLIGHGKGKGDAIDILLKDITNTRPQLAEKITEKIHVDDSHLTDRQVL
QLARRIVFGEDPRKPRRIHGQALPPSEFGALDFRGL
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mRNA from alignment at CM002469.1:305258..307170+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6705 ID=rna6705|Name=rna6705|organism=Nannochloropsis gaditana|type=mRNA|length=1913bp|location=Sequence derived from alignment at CM002469.1:305258..307170+ (Nannochloropsis gaditana)
AACAGAACCACACATTTCACGAGTCTCTGCCCAAGCGGGCGTGGTGCGGG
ACATGCGGGGAGACGCTACCACGTGCTGTTACCTGAGAGGCCTCCCCGAC
AATTtgcagggggcgggcgagcttTTTGGCTTTTGCtgcctcgccttttt
ccctgtCGCCTCTAACCTGGGTTTTTCCCCGAGCATGCCTCTGCCCGAAT
TCCCATCATCCTCGACTTACATTGAAGCGCCTGCCCACCGGGTGCACTCA
AAGTAGTGAAATTGTGCGACCACGGAACCAGTACTTTTCTTATCTCCCTC
ACTGACTTGCGGAATTCTGTTGCCGGCAATGATACACACTAGAATAACAG
ATAGCTTCTTCGAAATTCAACCGGCAAGATATCCCACGCAATTGGTATGG
CAATGAAAAGGCATCTGGCTTTCCTTGTGTGCCTGATGGTATCCGCTGCG
GCTTTTAAGCCGTCCACACCCTCTCCGTACCAGCGCGACCTTTCGCGTGG
CATTCGAAAGCATAATCGAGACGATGGTCCTGAGGCATCCGCCGACGATG
ACTTCACCCACGACCACGGGATGGTGGTGGTCGTCGTGAATGAGAAATGC
ACCAAGTTCTACCATGGTTTAATGCGCCCCCCGATCACGAGCCAAGCACC
AACATCTACATACGTGCACCCTGCAGATCCTTGGCGCATGAAGACTCAGG
TATGTGCTGCACATGTCTGGATGAAAGGTGGTtcaagcgaggaggggcac
tgGGCGCAACAGTCGTTTTGTCTCCACACCCAAATCTCTAAACACGTGCA
TGTCAACTGAGCTTAAAGTCACGAAGGGCATGTTTGGTGCGCGAATCTGA
GTGGCCCAGGAGAGCGACCTCTCAGGCTTTCAATAAGTGCAGCTGCGCAT
GCTCTTCTGATGTAAGGGTAGCAAAGAAGGAATCGCTCCTGATGTTAATC
ATGGATTcagagaaaggagatggACGAGATAGACTTTTCGAGCATGACAC
ACGTCATAAGTTTCCGCTGACGCGACCTGCAAAGAGAAAGTCAGAGGGTG
CTTTGCTCAGATCGTAAAGGTCGTCCACCGTGAGCGTTTCCGGAACGCTC
CGGGGAGACTAATTATCTGTCGGCGATGGCAAGATCCTTCAGTCGCCTGC
ACTTTGCATCGTGAGCGCATGCTTACAAGTCACCAACCCTCTTGCCCGTC
ACCCAGCAATTAGGCCACCCGCGTCAACGCCGAAGCAGAACGGGGCTTTA
CAGCACCAATTTTGGTCCCCGTGAGGCGACGCCTGGGTCCTCCCAGCAGC
CGGATCGCGACCACTACATGCGCGCCATTGAACAGCATCtcacccccgcc
tcccgggcACTGCTTATTGGACACGGAAAGGTAGGCGGGCGCGAAAAGGA
TGGCGGGACGCTGCACATTCCAGAAGGGGCTTCAGGGTATTAATACGTTT
TGTGATTCCCTCCTTACTGTGTAGGGCAAAGGCGACGCGATCGACATTTT
GCTCAAGGACATCACCAACACCAGGCCCCAATTGGCAGAAAAAATCACAG
AAAAGATCCACGTAGATGATAGCCACCTCACTGACAGGCAAGTCCTCCAG
CTAGCCCGTCGGATTGTGTTCGGTGAAGATCCACGCAAGCCTCGTCGCAT
TCATGGCCAGGCGCTGCCGCCTTCGGAATTCGGTGCGCTGGACTTCCGAG
GGTTATAAGTCACGTACCCGGCGCCTGTATGGCGACACCCTTATTGAAAC
GTAGTGATAGGTACAAAAAGACTACAACTTCTCTCAAAGAGTATTGTTTG
ACGCTGTTGGCGTTGCTTCACAAAAAGCTCGACGTGTTAAAATCGATCTC
GCTTGTCTTGTCTGCGTCAAATATCCGAACATCAAAGTTATAACGACAGT
TTCTTCTAGCCGG
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Coding sequence (CDS) from alignment at CM002469.1:305258..307170+

>rna6705 ID=rna6705|Name=rna6705|organism=Nannochloropsis gaditana|type=CDS|length=2133bp|location=Sequence derived from alignment at CM002469.1:305258..307170+ (Nannochloropsis gaditana)
ATGGCAATGAAAAGGCATCTGGCTTTCCTTGTGTGCCTGATGGTATCCGC
TGCGGCTTTTAAGCCGTCCACACCCTCTCCGTACCAGCGCGACCTTTCGC
GTGGCATTCGAAAGCATAATCGAGACGATGGTCCTGAGGCATCCGCCGAC
GATGACTTCACCCACGACCACGGGATGGTGGTGGTCGTCGTGAATGAGAA
ATGCACCAAGTTCTACCATGGTTTAATGCGCCCCCCGATCACGAGCCAAG
CACCAACATCTACATACGTGCACCCTGCAGATCCTTGGCGCATGAAGACT
CAGCAATTAGGCCACCCGCGTCAACGCCGAAGCAGAACGGGGCTTTACAG
CACCAATTTTGGTCCCCGTGAGGCGACGCCTGGGTCCTCCCAGCAGCCGG
ATCGCGACCACTACATGCGCGCCATTGAACAGCATCtcacccccgcctcc
cgggcACTGCTTATTGGACACGGAAAGGGCAAAGGCGACGCGATCGACAT
TTTGCTCAAGGACATCACCAACACCAGGCCCCAATTGGCAGAAAAAATCA
CAGAAAAGATCCACGTAGATGATAGCCACCTCACTGACAGGCAAGTCCTC
CAGCTAGCCCGTCGGATTGTGTTCGGTGAAGATCCACGCAAGCCTCGTCG
CATTCATGGCCAGGCGCTGCCGCCTTCGGAATTCGGTGCGCTGGACTTCC
GAGGGTTATAAATGGCAATGAAAAGGCATCTGGCTTTCCTTGTGTGCCTG
ATGGTATCCGCTGCGGCTTTTAAGCCGTCCACACCCTCTCCGTACCAGCG
CGACCTTTCGCGTGGCATTCGAAAGCATAATCGAGACGATGGTCCTGAGG
CATCCGCCGACGATGACTTCACCCACGACCACGGGATGGTGGTGGTCGTC
GTGAATGAGAAATGCACCAAGTTCTACCATGGTTTAATGCGCCCCCCGAT
CACGAGCCAAGCACCAACATCTACATACGTGCACCCTGCAGATCCTTGGC
GCATGAAGACTCAGCAATTAGGCCACCCGCGTCAACGCCGAAGCAGAACG
GGGCTTTACAGCACCAATTTTGGTCCCCGTGAGGCGACGCCTGGGTCCTC
CCAGCAGCCGGATCGCGACCACTACATGCGCGCCATTGAACAGCATCtca
cccccgcctcccgggcACTGCTTATTGGACACGGAAAGGGCAAAGGCGAC
GCGATCGACATTTTGCTCAAGGACATCACCAACACCAGGCCCCAATTGGC
AGAAAAAATCACAGAAAAGATCCACGTAGATGATAGCCACCTCACTGACA
GGCAAGTCCTCCAGCTAGCCCGTCGGATTGTGTTCGGTGAAGATCCACGC
AAGCCTCGTCGCATTCATGGCCAGGCGCTGCCGCCTTCGGAATTCGGTGC
GCTGGACTTCCGAGGGTTATAAATGGCAATGAAAAGGCATCTGGCTTTCC
TTGTGTGCCTGATGGTATCCGCTGCGGCTTTTAAGCCGTCCACACCCTCT
CCGTACCAGCGCGACCTTTCGCGTGGCATTCGAAAGCATAATCGAGACGA
TGGTCCTGAGGCATCCGCCGACGATGACTTCACCCACGACCACGGGATGG
TGGTGGTCGTCGTGAATGAGAAATGCACCAAGTTCTACCATGGTTTAATG
CGCCCCCCGATCACGAGCCAAGCACCAACATCTACATACGTGCACCCTGC
AGATCCTTGGCGCATGAAGACTCAGCAATTAGGCCACCCGCGTCAACGCC
GAAGCAGAACGGGGCTTTACAGCACCAATTTTGGTCCCCGTGAGGCGACG
CCTGGGTCCTCCCAGCAGCCGGATCGCGACCACTACATGCGCGCCATTGA
ACAGCATCtcacccccgcctcccgggcACTGCTTATTGGACACGGAAAGG
GCAAAGGCGACGCGATCGACATTTTGCTCAAGGACATCACCAACACCAGG
CCCCAATTGGCAGAAAAAATCACAGAAAAGATCCACGTAGATGATAGCCA
CCTCACTGACAGGCAAGTCCTCCAGCTAGCCCGTCGGATTGTGTTCGGTG
AAGATCCACGCAAGCCTCGTCGCATTCATGGCCAGGCGCTGCCGCCTTCG
GAATTCGGTGCGCTGGACTTCCGAGGGTTATAA
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Synonyms
Publications