rna670, rna670 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna670
Unique Name	rna670
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1761
Alignment location	CM002456.1:128514..129980 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100425g4.7072.mrna
Orig protein id	gnl\|cribi\|Naga_100425g4.7072
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:128514..129980 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100425g4	gene643	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna670	rna670-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30001.1	cds670	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:128514..129980+
coding sequence from alignment at CM002456.1:128514..129980+

mRNA sequence

>rna670 ID=rna670|Name=rna670|organism=Nannochloropsis gaditana|type=mRNA|length=1761bp
ATGTTCACTTCATTTTCTCCCCTTGCCGTACCTTTTGTTCACTTTTTGAA
GGTAAATCTCCTGGATAATACACGCATTCACCCGGAATGCTACCTAACGC
ATGAATGGGTGGGGAAAGTGATTCGAGACGCCATGGAGCAGGCAGACCCA
ACCATGGGCATCAACGAACTTGTTCGCTTGGTTATGCAGGATTCATTCAA
AATCCTCCTCGCCACCCTCTGCCCTCCCTCGGAACAAGGACGGCCCATCG
ACCGCCTCCTCGTCGCGGAGATCCCGGACGAGCTTGCGAGTCTCAATTTG
GAGGAGTTTGCGAATTACCTGGAGAACACGGGAAATGGAAAACACTATCA
GCAAATGGACCAGATCAAACAGGAGCTGAGGTTTCCGTTCCGCGATCCCA
GAGCGCCCTTCAGGGGCATAAGCGAAGACAAGCTGTTTGAGCTTGTCTCT
GGAGAGACTGATGCGACGCTCCGATCGGGCATGCCGGTGACGGGTCGCGT
CTGGAAGGTGGACGAGAACGCGGCGCGCGTCCGCCTGGACCAATGTGTAG
TGACTGGCTACTTGCACCGCTCTCGCTACCCGAACATGCAGCGAGACATG
GACTTCGAGGCAATGGTGCCTGTTGATACACCCGTGGAAGGGGTTGTGAC
GGAGATTGAGAAAAGCCGGATCTCCGTCCGTATTTCCTGCCTTGCCGAAG
ACCTGACGGCCAGGGACTGGCCTCGCCCCCCCTCGCTGCCTCCCTTGGAC
CGTCACTTCGACGAAGCGCGGGCCCTGAAAGAGTACGAAGAGCGGAGGAG
GAAGATCGAAGAGAAGGTCCGTCTGGCCAAGGAGGGCAAGCTCCGCTTGT
CGCGTCGACAGCGCAAGGTGGACGACGAGCGGTGGCGCACGGTCAATCAC
CTGGAGGCAGAGAAAGTGCTCAAGCAGCAGGGCAAGGTTGGGGAATGGCT
TTTTCGGCCTTCCGGTTCGGGTTCTATTTCCCTTTCGTGGCTGGCGTTGG
AGGATTTGGTGTTGCACATTCCTGTGAAAGAGGAGGAAAAGGAAGCCGGA
GACGCCGTCGGGAAAAAATTGACCGTGCAAGGGAGGGTTTATCAGGAGCT
GGACCAAATCGTCGCCCAATACATCCAGCCCATGAACGATCTGATCGACT
CGGTCACGTCCCACCGGAAGTTCCGACGCATGGCCAAAGAACAGGTGGAA
GCCGAGTTACGCGCGTCGAAGAAGAAACATCCGTCGCAGGTCTTTTACCT
CTATTATCCCGACCCACGGCGGCCGGGCTCTTTTAAGATGGCCCATATTG
TCAAGCATCAGATATTTGGGGAGCCTGTGGACGTGACGCCCCGTGGCCTT
TCCTTCCGGAATAATACGTTTCGGTCCTGCGACGAAGTCTCCGACTATTT
CAAAGAACATTTCAGGGATGCCGTCTCCCTATCTTCCTCCTCCACCTCCA
CCGCAATGCCCCCCACGGACTCTTCTACTTTAGCCCCTGCCCCCACCTCC
CGCCCTCCTTCCGGCTGCCCTCCTATGCGGATAATCATCCCGCTGGTTCC
CAAACAGGCATGCCCTCTTCCTTTCACCCTTTTCCTGGAGGCCCGTCTTT
GTCCACGCAGCAACAGCAACAGCAACAGCAATTACAGCAGACAGCATCAT
CGTCCCGGCGTTCTCGTTGGGAGTGAGAATCCCCATGCGGGCCACTGCGT
TTTACGGAAAGAGAAGAGGAGGAATGAGGAGGAATTACCTGTGGATCAGG
ATCCAATTTAG

protein sequence of rna670

>rna670-protein ID=rna670-protein|Name=rna670|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MLPLNSFLKTRRYGGKAKGGSRRMLRARHFLRSFDGAKCYRVHACTFTVM
TARYSSPKGTLSSGILSNARFLTNKTAGNPLNKDQVGETAHADVENQEKT
SAEMERRMQALKRFGLPKSLDKEAISAPQGKPISERKRSVTTSGIERIRR
LKDGKAEQSYDGVWVGILTRIKPELSRIVMHLGVVRSLIEDDGRESDTFI
ATCTYTHVNRFPALDSQPFKHLFENSNQKHGACKKLKALGITEARECESV

mRNA from alignment at CM002456.1:128514..129980+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna670 ID=rna670|Name=rna670|organism=Nannochloropsis gaditana|type=mRNA|length=1467bp|location=Sequence derived from alignment at CM002456.1:128514..129980+ (Nannochloropsis gaditana)
ATGCTGCCCTTAAACAGTTTTTTAAAGACCAGACGGTATGGAGGTAAAGC
CAAGGGCGGATCGAGAAGTGCGAAATAAAAGCAACGGTCTCGGCAACGTT
TTATTGTTGTTGTGTGCGAGTTGTTTTTATCGCTCAAACCTGAAATCACG
CAGCATTTCAGAAGACATATTGTGTTGGCAAGATATGCTGATATTTTCTC
TTAGGCATGGCCCATGTCGCCCCGCGTCATGTCCTGGATTCTTTGCAGTG
GTCATGAAACATAGAAATACGGATTGAACAGTGGCGCGTTTTAAACTTTG
CTCATGCTCCCACGGAGTGTTTGAATGCCTGTTGTGGGAATCGAAAACGT
GTATTCCGTGGGATTCTATTGACAAAATTAGCACCCGACGACCCTCTCTA
CCtgtcgggcaggaggaaggaagccgtAGGCGAGGAACGTACTTGCAAAG
ACACCAATATTCCCAAATCAAAGTACTTGACAGTCGGGCGGTCGATGTGG
TAAAAGCATATCCTGCTCTCAGTGATGCGCGACTTTTTGGGTTGTGGTCA
CCTCCGTTGATTTGTGCACGTCTCTTCGCttctccattccttcctcattt
GCCATATGGAAGTACACAATGGTTTTACCCGTTTTATTCCTGCCTTTACA
CACATCTCGCTTTCAATACATCCATCATAAAGACAGGAATGCTACGTGCC
CGACATTTTCTACGCTCTTTTGACGGGGCGAAGTGCTACCGTGTGCATGC
CTGTACGTTTACAGTCATGACCGCCCGATATTCGAGCCCGAAAGGGACGT
TGTCCTCCGGGATATTATCAAATGCTCGCTTCCTGACAAATAAGACAGCT
GGCAATCCTTTAAATAAAGATCAGGTAGGCGAAACCGCACATGCTGACGT
TGAAAACCAAGAAAAGACATCTGCGGAAATGGAGCGTCGAATGCAGGCGT
TGAAGCGATTTGGCCTCCCTAAAAGTTTGGATAAAGAAGCCATTTCAGCG
CCACAAGGGAAGCCCATATCTGAGCGAAAAAGATCAGGTGacgcagagga
agaaaaggagcaggACTGGAATGCCATATACAGTGACTACATCTGGTATC
GAGAGAATCAGACGACTAAAGGATGGAAAAGCTGAGCAGAGCTACGACGG
TGTGTGGGTCGGAATTTTGACAAGGATTAAGCCCGAATTATCTCGTATTG
TCATGCACCTGTGTGAGGCGACGCAGCGTGGGAATTTTGACGGAGGGCTT
cggggaaagcggggtcGTGCGAAGCCTAATTGAAGatgacgggagggaaa
gtgacACATTCATTGCCACATGTACATACACCCACGTGAATCGATTCCCT
GCGCTAGATTCTCAACCTTTTAAACACTTGTTCGAGAATTCCAATCAGAA
ACATGGTGCCTGCAAAAAATTGAAGGCACTTGGTATTACGGAGGCTCGGG
AGTGTGAAAGTGTGTAG

Coding sequence (CDS) from alignment at CM002456.1:128514..129980+

>rna670 ID=rna670|Name=rna670|organism=Nannochloropsis gaditana|type=CDS|length=3012bp|location=Sequence derived from alignment at CM002456.1:128514..129980+ (Nannochloropsis gaditana)
ATGCTGCCCTTAAACAGTTTTTTAAAGACCAGACGGTATGGAGGTAAAGC
CAAGGGCGGATCGAGAAGAATGCTACGTGCCCGACATTTTCTACGCTCTT
TTGACGGGGCGAAGTGCTACCGTGTGCATGCCTGTACGTTTACAGTCATG
ACCGCCCGATATTCGAGCCCGAAAGGGACGTTGTCCTCCGGGATATTATC
AAATGCTCGCTTCCTGACAAATAAGACAGCTGGCAATCCTTTAAATAAAG
ATCAGGTAGGCGAAACCGCACATGCTGACGTTGAAAACCAAGAAAAGACA
TCTGCGGAAATGGAGCGTCGAATGCAGGCGTTGAAGCGATTTGGCCTCCC
TAAAAGTTTGGATAAAGAAGCCATTTCAGCGCCACAAGGGAAGCCCATAT
CTGAGCGAAAAAGATCAGTGACTACATCTGGTATCGAGAGAATCAGACGA
CTAAAGGATGGAAAAGCTGAGCAGAGCTACGACGGTGTGTGGGTCGGAAT
TTTGACAAGGATTAAGCCCGAATTATCTCGTATTGTCATGCACCTcgggg
tcGTGCGAAGCCTAATTGAAGatgacgggagggaaagtgacACATTCATT
GCCACATGTACATACACCCACGTGAATCGATTCCCTGCGCTAGATTCTCA
ACCTTTTAAACACTTGTTCGAGAATTCCAATCAGAAACATGGTGCCTGCA
AAAAATTGAAGGCACTTGGTATTACGGAGGCTCGGGAGTGTGAAAGTGTG
TAGATGCTGCCCTTAAACAGTTTTTTAAAGACCAGACGGTATGGAGGTAA
AGCCAAGGGCGGATCGAGAAGAATGCTACGTGCCCGACATTTTCTACGCT
CTTTTGACGGGGCGAAGTGCTACCGTGTGCATGCCTGTACGTTTACAGTC
ATGACCGCCCGATATTCGAGCCCGAAAGGGACGTTGTCCTCCGGGATATT
ATCAAATGCTCGCTTCCTGACAAATAAGACAGCTGGCAATCCTTTAAATA
AAGATCAGGTAGGCGAAACCGCACATGCTGACGTTGAAAACCAAGAAAAG
ACATCTGCGGAAATGGAGCGTCGAATGCAGGCGTTGAAGCGATTTGGCCT
CCCTAAAAGTTTGGATAAAGAAGCCATTTCAGCGCCACAAGGGAAGCCCA
TATCTGAGCGAAAAAGATCAGTGACTACATCTGGTATCGAGAGAATCAGA
CGACTAAAGGATGGAAAAGCTGAGCAGAGCTACGACGGTGTGTGGGTCGG
AATTTTGACAAGGATTAAGCCCGAATTATCTCGTATTGTCATGCACCTcg
gggtcGTGCGAAGCCTAATTGAAGatgacgggagggaaagtgacACATTC
ATTGCCACATGTACATACACCCACGTGAATCGATTCCCTGCGCTAGATTC
TCAACCTTTTAAACACTTGTTCGAGAATTCCAATCAGAAACATGGTGCCT
GCAAAAAATTGAAGGCACTTGGTATTACGGAGGCTCGGGAGTGTGAAAGT
GTGTAGATGCTGCCCTTAAACAGTTTTTTAAAGACCAGACGGTATGGAGG
TAAAGCCAAGGGCGGATCGAGAAGAATGCTACGTGCCCGACATTTTCTAC
GCTCTTTTGACGGGGCGAAGTGCTACCGTGTGCATGCCTGTACGTTTACA
GTCATGACCGCCCGATATTCGAGCCCGAAAGGGACGTTGTCCTCCGGGAT
ATTATCAAATGCTCGCTTCCTGACAAATAAGACAGCTGGCAATCCTTTAA
ATAAAGATCAGGTAGGCGAAACCGCACATGCTGACGTTGAAAACCAAGAA
AAGACATCTGCGGAAATGGAGCGTCGAATGCAGGCGTTGAAGCGATTTGG
CCTCCCTAAAAGTTTGGATAAAGAAGCCATTTCAGCGCCACAAGGGAAGC
CCATATCTGAGCGAAAAAGATCAGTGACTACATCTGGTATCGAGAGAATC
AGACGACTAAAGGATGGAAAAGCTGAGCAGAGCTACGACGGTGTGTGGGT
CGGAATTTTGACAAGGATTAAGCCCGAATTATCTCGTATTGTCATGCACC
TcggggtcGTGCGAAGCCTAATTGAAGatgacgggagggaaagtgacACA
TTCATTGCCACATGTACATACACCCACGTGAATCGATTCCCTGCGCTAGA
TTCTCAACCTTTTAAACACTTGTTCGAGAATTCCAATCAGAAACATGGTG
CCTGCAAAAAATTGAAGGCACTTGGTATTACGGAGGCTCGGGAGTGTGAA
AGTGTGTAGATGCTGCCCTTAAACAGTTTTTTAAAGACCAGACGGTATGG
AGGTAAAGCCAAGGGCGGATCGAGAAGAATGCTACGTGCCCGACATTTTC
TACGCTCTTTTGACGGGGCGAAGTGCTACCGTGTGCATGCCTGTACGTTT
ACAGTCATGACCGCCCGATATTCGAGCCCGAAAGGGACGTTGTCCTCCGG
GATATTATCAAATGCTCGCTTCCTGACAAATAAGACAGCTGGCAATCCTT
TAAATAAAGATCAGGTAGGCGAAACCGCACATGCTGACGTTGAAAACCAA
GAAAAGACATCTGCGGAAATGGAGCGTCGAATGCAGGCGTTGAAGCGATT
TGGCCTCCCTAAAAGTTTGGATAAAGAAGCCATTTCAGCGCCACAAGGGA
AGCCCATATCTGAGCGAAAAAGATCAGTGACTACATCTGGTATCGAGAGA
ATCAGACGACTAAAGGATGGAAAAGCTGAGCAGAGCTACGACGGTGTGTG
GGTCGGAATTTTGACAAGGATTAAGCCCGAATTATCTCGTATTGTCATGC
ACCTcggggtcGTGCGAAGCCTAATTGAAGatgacgggagggaaagtgac
ACATTCATTGCCACATGTACATACACCCACGTGAATCGATTCCCTGCGCT
AGATTCTCAACCTTTTAAACACTTGTTCGAGAATTCCAATCAGAAACATG
GTGCCTGCAAAAAATTGAAGGCACTTGGTATTACGGAGGCTCGGGAGTGT
GAAAGTGTGTAG

Synonyms

Publications