rna6692, rna6692 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6692
Unique Name	rna6692
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3993
Alignment location	CM002469.1:271041..272048 -

Link to JBrowse

Properties


Property Name	Value
Product	manganese-dependent adp-ribose cdp-alcohol diphosphatase
Orig transcript id	gnl\|cribi\|Naga_100040g44.1996.mrna
Orig protein id	gnl\|cribi\|Naga_100040g44.1996
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:271041..272048 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100040g44	gene6470	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23998.1	cds6676	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6692	rna6692-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:271041..272048-
coding sequence from alignment at CM002469.1:271041..272048-

mRNA sequence

>rna6692 ID=rna6692|Name=rna6692|organism=Nannochloropsis gaditana|type=mRNA|length=3993bp
GGGTGTATGTGGACCTGTGTTGGTTTCGGGTTTGTTGTGTTGTTGTTATG
AACTCTCCAATATCATTTAAGAACCACTTGGTGTTGCGAGTCTACGCGAG
ACGGCACAATCGTGTTGCTTCCCTTTAGCTATCTGCCTTCCCTTTGCATA
ACAGAGGTCTCTTCAACTCTGACAAGCAGCGTTCCTCCTCTATGGAGAAA
AAATCACGCCTGTCATTACCCCTCACCGTTTTGGTACATGTATTGTCCCT
CAAAAATACATAGCAACATCAAGGACACTGTAAAAGGAAAGCACTGCAAG
CTGCTGCAGAAATTATTGGAAACATGGCGATCAAAAGTAGGGGCAGACGG
ATCAACTTCCTCCCTACGGCTTGCACCACCACACTGTTAGTGGCTGCGTG
CACTTCACAAAGCGCACAAGCGTTCTTATTGCCCTTTCAAGGGTCAAGGT
TTACTGCTCCCACGTCTAAAGCCATTGCGCCCGCTTCAAGGTTTCAAAGT
GGTGTGTCAACGTATGGATTGAGCGGCTTACTGAGCAGCACCGACGTCCG
CATGGACATTCGCAGTCGCAGTCGCGGCTCCACAACCATGATGAGCACCA
AGAATAATAATCAGATGTCTGCAGAAAGTTATACAGAGAAAGCATGGGAC
GTCATCACTCGGCTGCCGCAACTGGCCACGAGGTTGGAGTGCCAGTTCAT
CGATAATGAAATTCTGCTCAAGTCCCTGTTGGAGGAGGGCCCTCAGGCTT
TGGCGAACAGGGTTTTCTTTAAAGCGGGCGTCAAGCTGTCTCAGCTTGAG
ACCGAACTGGATAACTACATCGCGAGCCAGCCCAAGGTCCCGGATGCCTC
GAACAAGATGATGTCCAACACTCTACAAAAGGTGCTGGACGAAGCCTTCA
AAGAGCGGGACGCCATGCGCGACCAGTACGTCTCTGTGGAGCACCTCCTC
CTCGGTCTCGTAGCCCACGACTCGCGCTTCCTCAAGCCCGCCCTCACCAA
GCAAGGGGTCACGGAGGCGCAGATCCGGGAGGCAATTGCCTCCATTCGAG
GCAACAACGTGGTGACTAGCCGCACCCCGGAGGCCTCATACGAGGCGCTG
GAGCAGTACTCGAGAGACCTGACCCAGGCGGCCAAGGACGGAAAGCTGGA
CCCGGTGATCGGCCGGGACGATGAGATCCGCCGGACCATCCAAATCCTCA
GCCGCCGCACCAAGAACAATCCCATCCTGCTGGGCGAGCCGGGCGTGGGG
AAGACGGCGATCGCGGAGGGCCTGGCCCAGCGCATCGTCTCGGGGGATGT
GCCGGAGCCCCTCAAGAAGCGCCGCCTGGTCGCCTTGGACATGGGCGCGC
TGATCGCGGGCGCCAAGTACCGGGGAGAGTTCGAAGAGCGCCTGAAGGCG
GTCTTGAAGGAGGTTACGGAAAGCAACGGGCAGATCATCATGTTCATCGA
CGAGATCCACACGGTGGTGGGGGCTGGGGCCACGTCCGGCGCCATGGACG
CGAGCAATCTGCTCAAACCCATGCTGGCTCGGGGGGAGCTCCGCTGCATC
GGAGCCACCACCTTGGCGGAGTACAAGCAATTTATCGAGAAGGACAAGGC
CTTGGAGCGACGCTTTCAGCAAGTCATGGTGGAGCAGCCCAGTGTGGAGG
ACACCATCGCCATCCTCCGGGGCTTGAAGGACCGATATGAGGTGCACCAC
GGTGTGCGCATCCGCGACTCGTCCCTGGTGGCGGCCGCACAACTCTCCCA
CCGATACATTTCCGACCGCTTCCTCCCTGACAAGGCCATCGATCTCGTGG
ACGAGGCGGCGGCCAAGCTGAACATCGAGGTCACGTCCAAGCCCCAGGCG
GTGGATGAAATCGACCGGAAGTTGATACAGCTGGAAATGGCGAAGATTTC
GTTGGAGAACGAAAGCAGCAGCCCCGACTCGGCCCGCCGTCTGGCAAAGG
TGGAGAAGGAGATGGCGGAGCTCAAAAAGAAGCAACAGGAGCTGACAGCC
GCGTGGGAATTCGAGCGGAAGGGCGTGGTGGTCATTCAGGAACTTAAGGA
GAAAATCGACCAGGTCAAGGTGCAGATTGAGGCGGCGGAGCGCGAGTACG
ACCTGGGGAAAGCTGCCCAGTTGAAGTACGGCGAGCTTGCGAAACTGGAA
ACTGAGTTGCACCAAGCCGAAGCGGAAGTGGAGAAGCAGGCGGCGGCAGC
GGTTGGGGGGGGAGGGGAAAGCAAGCGGATGCTGCGTGACACGGTGACGG
TGGACGACATATCAGGGATCGTGGCCAAGTGGACGGGTATTCCTGTTTCG
AAACTCTTGGAAAGCGAGCGCGACAAGCTGCTGGGCCTGGAGGATGAGCT
GCACAAGCAAGTGGTGGGTCAGGACGACGCCGTGCGGGCAGTGGCGGAGG
CGATCCAACGGAGCCGCGCCGGCCTTTCGGACCCGAACAGACCCATTGCC
TCCCTCGTCTTCCTAGGCCCCACGGGCGTGGGGAAGACATTGCTCGCCAA
GAAATTGGCCGGGTACATGTTCGACGATGAAAATGCCATGATTCGCATCG
ATATGTCGGAGATGATGGAATCACACAGTCTGTCGAAACTGATTGGCTCC
CCTCCAGGCTACGTTGGATACGACGAGGGCGGTCAGCTTACGAACGCTGT
GCGGCGCCGACCTTATAGCGTCATCCTCTTCGACGAGATGGAGAAGGCGC
ATCCGACGATTTTTAACGTGATGCTCCAGTTGCTGGACGACGGGATTCTC
ACCGACGCACAGGGAAACACGGTCAACTTTAAGAATTCCATCATCATCTT
CACCTCTAACATCGGCTCGGACGCCATCCTCTCTCTGGGCGGGGACCCGG
AGAAGGACGCAGAGATGAAGGAAGTGGTGTTCCAGGCAATGAAAGAGCAG
TTCCGACCCGAATTTTTGAATCGCGTGGATGAATTCGTCATTTTCAGTTC
GTTGCGCAAGGATCAGATGAAAAGCGTGGTGCGTTTGGAGCTCCTACGGA
TGGAGAGCCGTTTGGCGGAGCGTAATATCAAGGTGGAGGTGACGGACGCT
GCTATGGACTGGATCGCAGAGGTTGGGTACGACCCGCAGTTCGGTGCCAG
GCCTCTGAAGCGTGCTATTCAACGCGAGGTGGAGAATGTGATTGCCAAGG
GCATTTTGAGGGGAGAATTTGCCCCCAACTCGTGCATTTTCATCGATTCG
AATCCGATCGAGGGCCTGAAAATCCTTTCACGCGAATTAACGTCCGAGGT
AGAGAAAGCTGGTGAGGGACGCGTCGGCAAGAGCGATAATGCCCCTGCCG
ACGAGCCAAAGCTAGTCAGCGCGTAAGGCAGGATCTTCGTTCCTTCACAG
AGTGACATCTGGGGATCGAAATTTGAGAGAGTCTTTTGAAAGGATGGTGA
AGGATTATATTAGTTCCGATGAAGAGAAGAGTGAGAAACAAAGCCTCGAA
TGTATAGTGTCGAGCAAGGGTCGATCTTCAGTTGAAAGCTATTCTCTTTA
CACGGTGTTCTTGGAAGGAGACGACTTGGAGTGCGAAGAAGGCGATGTGA
CGGGGGAAATCTCTTGCTAAGAAGTGAGGAATTCGATTGATGCGACGAAG
AGACAAGAAAGGAACACTGTCGTTCCGCCCACCAGAAGGCAGAGAAAGAA
ATGTGTCGAAATTGAGGAGGAATGATTGAAAAGATAGTGTTAAGGTCGGC
ACAGCTTTTTTGCAGTGACGAGGCGGAACAAGGTCCGGAAAAGGCTATTA
AGGAAAACAATATGTATATGAGAACTGCGAGGCTAACACGTCTTTTTCTG
ACACCTTCACCGTCTGTTTTACACTGAAGTTTTATGAGTGGGATCACATC
GTATGTCGTTTAGTGTCGTGAGTTGGCATGCGACATCCCTATTTGCCCCT
TGACCCCTTATCACAATTTGGTCTATGTAGACACGTGCCATGCTGTAGGC
GTTCTGCTTTGGCGGGCGCTGCTCTAGTGGAGTGTCGAGCACG

protein sequence of rna6692

>rna6692-protein ID=rna6692-protein|Name=rna6692|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MPDDGHNYTKTKRRYYRTSLIRLRQAVQAWVRERVHASTPYFVLQLGDLI
DGHAATSALGSEETLKRALKEFEPLQDCVVHHCVGNHELYNNACRDYWKR
YYRSAREHEPPGASSTPPQAPSTPRQALYYAFTPHPKFCFVKLDTYDVSI
LGSAPESTERADAERYLQKNPNKDRNSPLGLKGLDRRFVLYNGGVGSAQL
SWLRKTLRAAGIKGCEHVVIFSHIPLHPDACSPECLLWNYSEILQILAET
PGLVKVCLSGHAHEARVIRDGSSGIVHYVLDTPLEQRPPKQNAYSMARVY
IDQIVIRGQGANRDVACQLTTLNDIRCDPTHKTSV

mRNA from alignment at CM002469.1:271041..272048-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6692 ID=rna6692|Name=rna6692|organism=Nannochloropsis gaditana|type=mRNA|length=1008bp|location=Sequence derived from alignment at CM002469.1:271041..272048- (Nannochloropsis gaditana)
ATGCCAGACGACGGTCATAACTACACCAAAACAAAACGCCGATATTATCG
GACGAGCTTAATACGTCTGCGACAAGCGGTCCAGGCCTGGGTCCGCGAAC
GTGTCCACGCGTCAACCCCGTATTTCGTGCTCCAGCTCGGAGACCTCATC
GACGGACATGCTGCCACCTCTGCCTTAGGATCGGAGGAAACATTGAAACG
GGCATTAAAGGAGTTTGAGCCACTCCAGGACTGCGTTGTACATCACTGCG
TGGGCAATCATGAGCTGTACAATAACGCGTGCCGCGATTACTGGAAGCGC
TATTACCGTAGCGCTCGAGAGCATGAGCCACCAGGAGCCTCGTCGACACC
TCCACAAGCACCCAGCACTCCTCGTCAAGCACTTTATTACGCCTTTACCC
CACATCCAAAGTTTTGTTTCGTGAAGTTGGACACCTATGACGTATCGATT
CTGGGATCAGCGCCCGAGAGCACAGAGCGAGCCGATGCGGAACGTTACTT
GCAAAAAAATCCCAACAAGGATAGGAACAGTCCTTTGGGCCTGAAGGGTC
TTGACCGACGATTTGTGCTTTACAACGGTGGCGTGGGGAGCGCTCAATTA
AGCTGGCTTCGAAAGACCTTACGAGCAGCTGGTATTAAAGGGTGCGAGCA
CGTCGTGATCTTCTCGCATATTCCCCTCCACCCCGACGCATGCAGTCCTG
AATGTTTGCTTTGGAATTACTCTGAGATTTTGCAGATTCTGGCAGAAACC
CCTGGTCTTGTGAAGGTCTGTCTTTCAGGTCACGCGCACGAAGCCCGGGT
CATTCGCGATGGCTCAAGCGGCATCGTCCACTACGTGCTCGACACTCCAC
TAGAGCAGCGCCCGCCAAAGCAGAACGCCTACAGCATGGCACGTGTCTAC
ATAGACCAAATTGTGATAAGGGGTCAAGGGGCAAATAGGGATGTCGCATG
CCAACTCACGACACTAAACGACATACGATGTGATCCCACTCATAAAACTT
CAGTGTAA

Coding sequence (CDS) from alignment at CM002469.1:271041..272048-

>rna6692 ID=rna6692|Name=rna6692|organism=Nannochloropsis gaditana|type=CDS|length=1008bp|location=Sequence derived from alignment at CM002469.1:271041..272048- (Nannochloropsis gaditana)
ATGCCAGACGACGGTCATAACTACACCAAAACAAAACGCCGATATTATCG
GACGAGCTTAATACGTCTGCGACAAGCGGTCCAGGCCTGGGTCCGCGAAC
GTGTCCACGCGTCAACCCCGTATTTCGTGCTCCAGCTCGGAGACCTCATC
GACGGACATGCTGCCACCTCTGCCTTAGGATCGGAGGAAACATTGAAACG
GGCATTAAAGGAGTTTGAGCCACTCCAGGACTGCGTTGTACATCACTGCG
TGGGCAATCATGAGCTGTACAATAACGCGTGCCGCGATTACTGGAAGCGC
TATTACCGTAGCGCTCGAGAGCATGAGCCACCAGGAGCCTCGTCGACACC
TCCACAAGCACCCAGCACTCCTCGTCAAGCACTTTATTACGCCTTTACCC
CACATCCAAAGTTTTGTTTCGTGAAGTTGGACACCTATGACGTATCGATT
CTGGGATCAGCGCCCGAGAGCACAGAGCGAGCCGATGCGGAACGTTACTT
GCAAAAAAATCCCAACAAGGATAGGAACAGTCCTTTGGGCCTGAAGGGTC
TTGACCGACGATTTGTGCTTTACAACGGTGGCGTGGGGAGCGCTCAATTA
AGCTGGCTTCGAAAGACCTTACGAGCAGCTGGTATTAAAGGGTGCGAGCA
CGTCGTGATCTTCTCGCATATTCCCCTCCACCCCGACGCATGCAGTCCTG
AATGTTTGCTTTGGAATTACTCTGAGATTTTGCAGATTCTGGCAGAAACC
CCTGGTCTTGTGAAGGTCTGTCTTTCAGGTCACGCGCACGAAGCCCGGGT
CATTCGCGATGGCTCAAGCGGCATCGTCCACTACGTGCTCGACACTCCAC
TAGAGCAGCGCCCGCCAAAGCAGAACGCCTACAGCATGGCACGTGTCTAC
ATAGACCAAATTGTGATAAGGGGTCAAGGGGCAAATAGGGATGTCGCATG
CCAACTCACGACACTAAACGACATACGATGTGATCCCACTCATAAAACTT
CAGTGTAA

Synonyms

Publications