rna6690, rna6690 (mRNA) Nannochloropsis gaditana

Overview
Namerna6690
Unique Namerna6690
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length624
Alignment locationCM002469.1:263324..265271 +

Link to JBrowse

Properties
Property NameValue
ProductAlpha/beta hydrolase fold-1
Orig transcript idgnl|cribi|Naga_100040g41.2016.mrna
Orig protein idgnl|cribi|Naga_100040g41.2016
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:263324..265271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100040g41gene6468Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6690rna6690-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24018.1cds6674Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6690 ID=rna6690|Name=rna6690|organism=Nannochloropsis gaditana|type=mRNA|length=624bp
ATGGAGAGATACGACAAAAATCTTGAGGAGGAGGTGCAACAATGGATTGA
AGGCGTCCTGAAGGAGCCTTTCCCGGAAGATTTGACTTTTGCCGAGGCCC
TAAGAGATGGAACGCGCCTTTGCCGCCTTATGAATGAAATTCAACCTGGC
AGCGTAAAGAAGATCAATTCATCCACTATGATGTTCAAACAAATGGAAAA
CATTTCCCTTTTTCTTGCCGCTTGCCGGACGTTGGGCGTGCCGTCGTTCG
ACTGCTTTGAGACCAACGACTTGTTTCAGGTGAAGAATATGCAAGGCGTT
CTCCGATGCCTAGACTCGCTCGGCCGCACAGTGCAAGCGAAGTGCCCGTC
CTTTGCAGGTCCTCACCTAGGAGCTAAAATGGCAACGAAAAACGAACGCA
ATTTCGATCCCGCGCTCCTGAAAGCGAGCAAAGCGGCAGTGAACAAATTG
AACATGGGGTCGGCCGGCTACATGGAGAGAAAATCCTGCGACATCTCCAC
CAGTGTCACTTTCGGTAATGAGCACGGCCGTGGAGACAGTGGAAACCTGA
ATACATTTTTGACTCCGGAAGGGACGCAGTGCGTCGTTCAGGATCAGTCA
GTGGCAGGAACGGGGCAATGCTAG
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protein sequence of rna6690

>rna6690-protein ID=rna6690-protein|Name=rna6690|organism=Nannochloropsis gaditana|type=polypeptide|length=533bp
MHAGAGKVRQLPYPGCAGCASVSACPTAAKSQGGPCGGVASQLHQDSTPR
HAAAAPHSPSSSSCSAVASCCSLSPPPPRGQEQQAWKNGIDRPIHDQALR
AQRRARVPEPHRQERLEKARGAERRAEHKKWKREVAQWNLSSKLLAGIAG
LWILATTLLLTVPEAHGLITYLHWVRWPPSRELTDLVAFRLPHARNIEVH
TADGMLLKGWHVLPSHQVAAAASRFPLDSRAREEFFDEAMGRPDSRIVLY
FHGNAATRGQFNRVELIKALAATMQAHVVTVDYRGFGDSTGWPSEEGLAL
DARALWAWVEERAGRGEGGAQVFLYGHSLGACVALELARHLPLVAALTPE
CSDAPDFSSFSPSSSNAKESAPAAPASLVARRPDAGDIQAGRQAKSVTPS
GVILEAPFTNLSMAALYHPSALPFRLLPFFKHALILSMHERFPSLEYIQQ
VQQPIIILHGRRDRMIPFHLGEELYHTARLARLRERPETLEDVWFAEFSQ
AGHSNMYAYPQWTDELHTFMGSVEGAGNGKVVT
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mRNA from alignment at CM002469.1:263324..265271+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6690 ID=rna6690|Name=rna6690|organism=Nannochloropsis gaditana|type=mRNA|length=1948bp|location=Sequence derived from alignment at CM002469.1:263324..265271+ (Nannochloropsis gaditana)
CTGTCCACATAAGACGGCGTGAAAGCAATCAAGACAGGCCAAACTCGATC
ACAGGCATTTCACATAGTCATGCCGAGTCAGTCACATCGTAAGAAACTCA
TCCATGGTCCCAAAAATCCGGGATAACACAGATGCGTGCCACCACGGCAC
AATTTACCCCGTCATGATGGCGTTCAGTCGTTCACCCCACCTTTGTCTCC
CCCAGATATCATGCATGCAGGTGCAGGGAAGGTACGTCAATTGCCGTATC
CAGGATGTGCCGGCTGCGCGAGTGTTTCTGCATGCCCGACTGCAGCAAAG
TCGCAGGGTGGGCCTTGTGGCGGTGTTGCATCCCAGCTTCATCAAGACAG
TACCCCGCGGCATGCGGCCGCCGCGCCTCATTCcccatcgtcttcctcct
gctctgcAGTAGCATCATGCTGCTCCttatctcctccgccacctcgcGGA
CAAGAGCAACAAGCGTGGAAAAACGGCATCGACCGACCGATACATGACCA
GGCCTTACGGGCACAGCGACGTGCCCGCGTGCCAGAACCGCACCGACAGG
AGCGGCTTGAGAAGGCACGAGGGGCTGAACGCAGGGCTGAGCATAAGAAA
TGGAAGCGGGAAGTCGCCCAATGGAACCTGTCTTCGAAACTCTTGGCTGG
AATCGCAGGGCTGTGGATCCTGGCAACCACTCTCCTTCTCACGGTGCCGG
AAGCGCACGGGCTCATCACCTACCTTCATTGGGTCCGGTGGCCACCCTCC
AGGGAGCTCACCGATCTAGTCGCTTTCCGACTCCCGCATGCCCGGAACAT
CGAAGTCCACACCGCCGACGGGATGCTATTGAAGGGATGGCAtgtcctgc
cctcccaccaggtCGCGGCCGCAGCCAGTCGCTTCCCTTTGGACAGCCGG
GCCCGTGAGGAATTCTTCGACGAGGCCATGGGCCGTCCAGATTCTCGGAT
CGTCCTGTACTTTCACGGGAATGCGGCCACCCGGGGCCAATTCAATCGGG
TCGAGCTTATCAAGGCGCTCGCGGCGACCATGCAGGCGCACGTTGTGACG
GTCGACTATCGGGGGTTCGGGGACTCCACGGGCTGGCCCTCCGAGGAAGG
CTTGGCTCTGGATGCACGGGCTCTGTGGGcatgggtggaggagcgggcag
gcaggggcgagggcggcgcGCAAGTCTTCCTGTACGGACACTCCCTTGGG
GCATGTGTGGCCTTGGAGCTGGCCAGGCACCTCCCTCTGGTCGCGGCACT
GACACCGGAGTGCTCGGATGCCCCGGACTTCTCatctttctcgccctcgt
cctccaatgCCAAGGAGTCGGCGCCAGCTGCTCCTGCGTCTCTGGTCGCC
AGAAGACCCGACGCCGGCGACATACAAGCAGGTCGGCAGGCCAAGTCTGT
CACCCCGAGCGGCGTGATCCTGGAAGCCCCCTTCACCAACCTGAGTATGG
CCGCGCTTTACCACCCGAGCGCGCTGcccttccgtctcctcccttttttc
aaGCACGCCCTTATCCTTTCCATGCACGagcgtttcccctccctcgaatA
CATCCAGCAGGTGCAGCAGcccatcatcatcctccacGGTCGCCGCGACC
GCATgatccccttccacctgggggaggagctctACCACACGGCGCGACTC
GCCAGGCTACGCGAGCGCCCCGAGACGTTGGAGGACGTCTGGTTCGCGGA
GTTTTCCCAAGCGGGCCACAGCAACATGTATGCGTACCCGCAGTGGACAG
ACGAGCTACACACATTTATGGGCAgtgtggagggcgcgggcaATGGCAAG
GTGGTCacatgagggagagggagatggagtgGCCAAGAGGGTAGTCTAGG
GCAGAAAGGACGGCTTCTTGAGGAAAACGATTTGTAGAAAGTGTGCAACC
CCGAATGATGTACATAATCAAAATAATGAATGTTCAGGCCGTGATTAC
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Coding sequence (CDS) from alignment at CM002469.1:263324..265271+

>rna6690 ID=rna6690|Name=rna6690|organism=Nannochloropsis gaditana|type=CDS|length=1602bp|location=Sequence derived from alignment at CM002469.1:263324..265271+ (Nannochloropsis gaditana)
ATGCATGCAGGTGCAGGGAAGGTACGTCAATTGCCGTATCCAGGATGTGC
CGGCTGCGCGAGTGTTTCTGCATGCCCGACTGCAGCAAAGTCGCAGGGTG
GGCCTTGTGGCGGTGTTGCATCCCAGCTTCATCAAGACAGTACCCCGCGG
CATGCGGCCGCCGCGCCTCATTCcccatcgtcttcctcctgctctgcAGT
AGCATCATGCTGCTCCttatctcctccgccacctcgcGGACAAGAGCAAC
AAGCGTGGAAAAACGGCATCGACCGACCGATACATGACCAGGCCTTACGG
GCACAGCGACGTGCCCGCGTGCCAGAACCGCACCGACAGGAGCGGCTTGA
GAAGGCACGAGGGGCTGAACGCAGGGCTGAGCATAAGAAATGGAAGCGGG
AAGTCGCCCAATGGAACCTGTCTTCGAAACTCTTGGCTGGAATCGCAGGG
CTGTGGATCCTGGCAACCACTCTCCTTCTCACGGTGCCGGAAGCGCACGG
GCTCATCACCTACCTTCATTGGGTCCGGTGGCCACCCTCCAGGGAGCTCA
CCGATCTAGTCGCTTTCCGACTCCCGCATGCCCGGAACATCGAAGTCCAC
ACCGCCGACGGGATGCTATTGAAGGGATGGCAtgtcctgccctcccacca
ggtCGCGGCCGCAGCCAGTCGCTTCCCTTTGGACAGCCGGGCCCGTGAGG
AATTCTTCGACGAGGCCATGGGCCGTCCAGATTCTCGGATCGTCCTGTAC
TTTCACGGGAATGCGGCCACCCGGGGCCAATTCAATCGGGTCGAGCTTAT
CAAGGCGCTCGCGGCGACCATGCAGGCGCACGTTGTGACGGTCGACTATC
GGGGGTTCGGGGACTCCACGGGCTGGCCCTCCGAGGAAGGCTTGGCTCTG
GATGCACGGGCTCTGTGGGcatgggtggaggagcgggcaggcaggggcga
gggcggcgcGCAAGTCTTCCTGTACGGACACTCCCTTGGGGCATGTGTGG
CCTTGGAGCTGGCCAGGCACCTCCCTCTGGTCGCGGCACTGACACCGGAG
TGCTCGGATGCCCCGGACTTCTCatctttctcgccctcgtcctccaatgC
CAAGGAGTCGGCGCCAGCTGCTCCTGCGTCTCTGGTCGCCAGAAGACCCG
ACGCCGGCGACATACAAGCAGGTCGGCAGGCCAAGTCTGTCACCCCGAGC
GGCGTGATCCTGGAAGCCCCCTTCACCAACCTGAGTATGGCCGCGCTTTA
CCACCCGAGCGCGCTGcccttccgtctcctcccttttttcaaGCACGCCC
TTATCCTTTCCATGCACGagcgtttcccctccctcgaatACATCCAGCAG
GTGCAGCAGcccatcatcatcctccacGGTCGCCGCGACCGCATgatccc
cttccacctgggggaggagctctACCACACGGCGCGACTCGCCAGGCTAC
GCGAGCGCCCCGAGACGTTGGAGGACGTCTGGTTCGCGGAGTTTTCCCAA
GCGGGCCACAGCAACATGTATGCGTACCCGCAGTGGACAGACGAGCTACA
CACATTTATGGGCAgtgtggagggcgcgggcaATGGCAAGGTGGTCacat
ga
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Synonyms
Publications