rna6689, rna6689 (mRNA) Nannochloropsis gaditana

Overview
Namerna6689
Unique Namerna6689
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1845
Alignment locationCM002469.1:260588..261740 -

Link to JBrowse

Properties
Property NameValue
Productmuscular protein 20
Orig transcript idgnl|cribi|Naga_100040g40.2000.mrna
Orig protein idgnl|cribi|Naga_100040g40.2000
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:260588..261740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100040g40gene6467Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6689rna6689-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24002.1cds6673Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6689 ID=rna6689|Name=rna6689|organism=Nannochloropsis gaditana|type=mRNA|length=1845bp
ATGTATCGTCTGACGGAACAAGAGATTAATTTGGAGACCGCCGAACTCGA
CTCAGCAGCTCATCATCCCCAAGCAATTGGCCGGATACCTGATCCAGGAT
GGACAGGAGGGAATGGGTTGCAAGGCTCTGTTCACACCCCAGAGGACGGT
GGCCTTTTATTGGAAAGCTCCTCGTCTTCCTCCTCTTTGGCGGACGATGA
GGAGCAAGGCGAAGTCAGGACCCTGGTAGCTGGGAATACGCCTCGAAGTG
AGGCACGCACGCCAGCCTCCAGAAAGGCTCCCAATTGGGATCAGCGTATT
GGTAAAATGGAGATCGAAGGTGTGGAGGCCGGAGAGACTCGGGAGCCTGG
GGACGACATGGACCCGGTCATGCGCGCGAGCCTGATCAGCATGTACAGCT
TGCAGAACTCCGCCTTGCTCATGTCCTATTGGACGATCGGCTTCGCCATG
ACCTTCACAGGAACCCCCCTCACTGCGTACGCGGTGAACAAGCTCAATGT
GGGCCCGGCCCAGCTCAACATCGCAGGAACCATGCTCGCGCTTCCCTGGT
CCTTTAAGGTCCTCTACGGCCTGCTCTCGGACTGCGTCCCCATCATGGGC
AAACGCCGCAAGCCCTACTTCGTCATCGGCTGGTCCGCCTTTGTCGCCAT
GAACCTCGGCCTGGCCTCCCTGGGGGAGCCCAGCCTGAACGCCCTCATCG
GCATGGGCTTCTTCTCCGTGTGCGGGTACATGCTGGCGGACGTCATGTGC
GACGCGATTATCGTGGAGCGTTCCAAACTGGAGCCGGAGGGGCGGGTGGG
GCACATGCAGAGCGTGGGCTACGTGGCGCGCTACGTCGGGAACGTGGTGG
GCGCCACCCTTGGGACGATCTTGTACAACGAGAAGGAGTGGCATTGGGGA
CTGAGCATCAGTTCCATCTACCTCTTGAACGGGCTGGCAGCCGTGGTGCT
GGTGCTACCCTTCACCTACCACCTTTCGGACCCGAACCAGGTCCTAGAGG
CACGCTCGCTGAAAGAGCAGCTTGGGGACATCTGGAAGATGGTGCAACGC
CGCACCATCTATGTGCCCATGTCCTTCATCGCCGTCTACAACATGCTCCT
CATTCCCAACGCGGCCTGGTCCAACTTCTTGATCCTCGGGCTCAAGTTCA
CGCCCTGGATGCTCGGAATCATGTTCATCGTCGCCACGGTCTTTTCTTGG
CTGGGCATCACATTCTACCGTGCCTTTTTGATGCCCTATTCCTGGCGATG
GGTCTACATCATCAGCACCTCCCTCACCGTCTTCTTCTCCGTCCTTCAGC
TCTCCCTCATTTTCCGCCTCAATGCCAGGTGGGGCATCCCAGACTTGATC
TTCGCGCTGGGAGACGACGCGGCCGCGAATTTCATCACCGCGCTTCAGTT
CCTCCCCGCCGTGACCATGTACATCGGCCTCTGTCCGGCCGGGGCTGAAG
GGACCTCGTACGCCATGCTCACGACGCTGAGCAACGTGGCCGGAGCCATC
GGGAGCGACCTGGGCACGCTCATGACGGGCATCTGGGACGTGTCCAACAC
GGCCCTGGCGGCGGGCGAGTGGACGGGCCTCTGGAAGCTCTCCCTGCTCA
CGAGTCTGCTCCAGCCATTGGGTCTCTGTCTCCTCTTCCTCCTGCCCCGG
GACGTGGCCCATCAGAAGGCGATGCAGAAGTGCGACAAGCGGGACTGGTG
GGGCGGCTTCGGCTTCGTCACCTTCCTTGTCGTGGCCTGGACATGGACCA
TCGTCCAGACCCTTGCTTCGTGGGTGGAGCCACCTTTTGTATGGGTAGGA
CCCGAGGTGTCGCGCATTGGGAAGAATGCGGATGCACAAAGATAA
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protein sequence of rna6689

>rna6689-protein ID=rna6689-protein|Name=rna6689|organism=Nannochloropsis gaditana|type=polypeptide|length=207bp
MERYDKNLEEEVQQWIEGVLKEPFPEDLTFAEALRDGTRLCRLMNEIQPG
SVKKINSSTMMFKQMENISLFLAACRTLGVPSFDCFETNDLFQVKNMQGV
LRCLDSLGRTVQAKCPSFAGPHLGAKMATKNERNFDPALLKASKAAVNKL
NMGSAGYMERKSCDISTSVTFGNEHGRGDSGNLNTFLTPEGTQCVVQDQS
VAGTGQC
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mRNA from alignment at CM002469.1:260588..261740-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6689 ID=rna6689|Name=rna6689|organism=Nannochloropsis gaditana|type=mRNA|length=1153bp|location=Sequence derived from alignment at CM002469.1:260588..261740- (Nannochloropsis gaditana)
ATGGAGAGATACGACAAAAATCTTGGTATGTATATAACAAAAGAACCTTG
AGATTTAACATGTGACACTGCCTTAAGTATATGACAACCAGTGGTGATAC
TTCAGCAAGTAAAGCAAGCTTTCCTCCCCTCCTTGACATGTCCGTGATCG
AGAAACATGCCGCCTCCACTTCAATACTTCTTTCTATCTTTATCAATATC
TTAGAGGAGGAGGTGCAACAATGGATTGAAGGCGTCCTGAAGGAGCCTTT
CCCGGAAGATTTGACTTTTGCCGAGGCCCTAAGAGATGGAACGCGCCTTT
GCCGCCTTATGAATGAAATTCAAGTACGTAGACTGAAGCTTTTGGAAGTT
CTTCTCATCCCCGTCTTTCATTTTTCCTCCCGAACTTTTTCAATCGCTGA
CACCCCTTTAATGCTCTGTAGTTTGCGATGTTGTCAATGACTTGAAGGAC
GTAGCCTGTATGATTTCTGTCGATGGCTCCGGAAAGACAATCTCATCTCT
TCTCGCCCTTCCACTTGCATTTACTCGCAGCCTGGCAGCGTAAAGAAGAT
CAATTCATCCACTATGATGTTCAAACAAATGGAAAACATTTCCCTTTTTC
TTGCCGCTTGCCGGACGTTGGGCGTGCCGTCGTTCGACTGCTTTGAGACC
AACGACTTGTTTCAGGGTAAGGATGCCGCCTTGGTAGCTGCCTATTTTTC
ACCTGTCACGGCCCATGACTCATGGCCTTACTTCTCATCCTTTTCTTTCC
CCTCGATGGTCTTTTGTATCCCGGCGACGCGATTTGGCTGCGATTACACA
ACGGTACAGTGAAGAATATGCAAGGCGTTCTCCGATGCCTAGACTCGCTC
GGCCGCACAGTGCAAGCGAAGTGCCCGTCCTTTGCAGGTCCTCACCTAGG
AGCTAAAATGGCAACGAAAAACGAACGCAATTTCGATCCCGCGCTCCTGA
AAGCGAGCAAAGCGGCAGTGAACAAATTGAACATGGGGTCGGCCGGCTAC
ATGGAGAGAAAATCCTGCGACATCTCCACCAGTGTCACTTTCGGTAATGA
GCACGGCCGTGGAGACAGTGGAAACCTGAATACATTTTTGACTCCGGAAG
GGACGCAGTGCGTCGTTCAGGATCAGTCAGTGGCAGGAACGGGGCAATGC
TAG
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Coding sequence (CDS) from alignment at CM002469.1:260588..261740-

>rna6689 ID=rna6689|Name=rna6689|organism=Nannochloropsis gaditana|type=CDS|length=2496bp|location=Sequence derived from alignment at CM002469.1:260588..261740- (Nannochloropsis gaditana)
TGAAGAATATGCAAGGCGTTCTCCGATGCCTAGACTCGCTCGGCCGCACA
GTGCAAGCGAAGTGCCCGTCCTTTGCAGGTCCTCACCTAGGAGCTAAAAT
GGCAACGAAAAACGAACGCAATTTCGATCCCGCGCTCCTGAAAGCGAGCA
AAGCGGCAGTGAACAAATTGAACATGGGGTCGGCCGGCTACATGGAGAGA
AAATCCTGCGACATCTCCACCAGTGTCACTTTCGGTAATGAGCACGGCCG
TGGAGACAGTGGAAACCTGAATACATTTTTGACTCCGGAAGGGACGCAGT
GCGTCGTTCAGGATCAGTCAGTGGCAGGAACGGGGCAATGCTAGCCTGGC
AGCGTAAAGAAGATCAATTCATCCACTATGATGTTCAAACAAATGGAAAA
CATTTCCCTTTTTCTTGCCGCTTGCCGGACGTTGGGCGTGCCGTCGTTCG
ACTGCTTTGAGACCAACGACTTGTTTCAGGAGGAGGAGGTGCAACAATGG
ATTGAAGGCGTCCTGAAGGAGCCTTTCCCGGAAGATTTGACTTTTGCCGA
GGCCCTAAGAGATGGAACGCGCCTTTGCCGCCTTATGAATGAAATTCAAA
TGGAGAGATACGACAAAAATCTTGTGAAGAATATGCAAGGCGTTCTCCGA
TGCCTAGACTCGCTCGGCCGCACAGTGCAAGCGAAGTGCCCGTCCTTTGC
AGGTCCTCACCTAGGAGCTAAAATGGCAACGAAAAACGAACGCAATTTCG
ATCCCGCGCTCCTGAAAGCGAGCAAAGCGGCAGTGAACAAATTGAACATG
GGGTCGGCCGGCTACATGGAGAGAAAATCCTGCGACATCTCCACCAGTGT
CACTTTCGGTAATGAGCACGGCCGTGGAGACAGTGGAAACCTGAATACAT
TTTTGACTCCGGAAGGGACGCAGTGCGTCGTTCAGGATCAGTCAGTGGCA
GGAACGGGGCAATGCTAGCCTGGCAGCGTAAAGAAGATCAATTCATCCAC
TATGATGTTCAAACAAATGGAAAACATTTCCCTTTTTCTTGCCGCTTGCC
GGACGTTGGGCGTGCCGTCGTTCGACTGCTTTGAGACCAACGACTTGTTT
CAGGAGGAGGAGGTGCAACAATGGATTGAAGGCGTCCTGAAGGAGCCTTT
CCCGGAAGATTTGACTTTTGCCGAGGCCCTAAGAGATGGAACGCGCCTTT
GCCGCCTTATGAATGAAATTCAAATGGAGAGATACGACAAAAATCTTGTG
AAGAATATGCAAGGCGTTCTCCGATGCCTAGACTCGCTCGGCCGCACAGT
GCAAGCGAAGTGCCCGTCCTTTGCAGGTCCTCACCTAGGAGCTAAAATGG
CAACGAAAAACGAACGCAATTTCGATCCCGCGCTCCTGAAAGCGAGCAAA
GCGGCAGTGAACAAATTGAACATGGGGTCGGCCGGCTACATGGAGAGAAA
ATCCTGCGACATCTCCACCAGTGTCACTTTCGGTAATGAGCACGGCCGTG
GAGACAGTGGAAACCTGAATACATTTTTGACTCCGGAAGGGACGCAGTGC
GTCGTTCAGGATCAGTCAGTGGCAGGAACGGGGCAATGCTAGCCTGGCAG
CGTAAAGAAGATCAATTCATCCACTATGATGTTCAAACAAATGGAAAACA
TTTCCCTTTTTCTTGCCGCTTGCCGGACGTTGGGCGTGCCGTCGTTCGAC
TGCTTTGAGACCAACGACTTGTTTCAGGAGGAGGAGGTGCAACAATGGAT
TGAAGGCGTCCTGAAGGAGCCTTTCCCGGAAGATTTGACTTTTGCCGAGG
CCCTAAGAGATGGAACGCGCCTTTGCCGCCTTATGAATGAAATTCAAATG
GAGAGATACGACAAAAATCTTGTGAAGAATATGCAAGGCGTTCTCCGATG
CCTAGACTCGCTCGGCCGCACAGTGCAAGCGAAGTGCCCGTCCTTTGCAG
GTCCTCACCTAGGAGCTAAAATGGCAACGAAAAACGAACGCAATTTCGAT
CCCGCGCTCCTGAAAGCGAGCAAAGCGGCAGTGAACAAATTGAACATGGG
GTCGGCCGGCTACATGGAGAGAAAATCCTGCGACATCTCCACCAGTGTCA
CTTTCGGTAATGAGCACGGCCGTGGAGACAGTGGAAACCTGAATACATTT
TTGACTCCGGAAGGGACGCAGTGCGTCGTTCAGGATCAGTCAGTGGCAGG
AACGGGGCAATGCTAGCCTGGCAGCGTAAAGAAGATCAATTCATCCACTA
TGATGTTCAAACAAATGGAAAACATTTCCCTTTTTCTTGCCGCTTGCCGG
ACGTTGGGCGTGCCGTCGTTCGACTGCTTTGAGACCAACGACTTGTTTCA
GGAGGAGGAGGTGCAACAATGGATTGAAGGCGTCCTGAAGGAGCCTTTCC
CGGAAGATTTGACTTTTGCCGAGGCCCTAAGAGATGGAACGCGCCTTTGC
CGCCTTATGAATGAAATTCAAATGGAGAGATACGACAAAAATCTTG
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Synonyms
Publications