rna6687, rna6687 (mRNA) Nannochloropsis gaditana

Overview
Namerna6687
Unique Namerna6687
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length591
Alignment locationCM002469.1:256544..256923 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100040g38.2021.mrna
Orig protein idgnl|cribi|Naga_100040g38.2021
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:256544..256923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100040g38gene6465Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6687rna6687-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24023.1cds6671Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6687 ID=rna6687|Name=rna6687|organism=Nannochloropsis gaditana|type=mRNA|length=591bp
ATGAAGGTAGCTGCCATTCTCCTTGCCCTCTGCGCCACAACTCAGGCTTT
CGTGCCTTTCGCCGCCAAGCCCGCTCCCCGGGCGGCCCCCGTGGCTGCTG
GTAAGCAAAATCCAGATGGCTCCATCCGCGTCAAGGGTGTGAAGGCGAAG
GACGAGTGGGTGCCCCTGCTCAAGGCCACAGACATTGCTCCGGGGGACAT
CATCCCCGTCGAGTCCAAGGGTCTGCAGCTCCTCCTGGTGGCCGACTACG
ACGGGAGTGTATACTGCGTGGCCAATATCTGCCCCCACCTGGGCACCCCC
CTGGACCAAGGCTCCCTGGGAGACGGGACCATCGTCTGCCCCCTGCACAA
GTCCGCCTTCAGCCTCGAGACCGGTGAGCTCGTCGGCGACTGGTGCCCTT
TTCCCCCCGTCCTCGGTCCCCTGGTGCTGGGCAAACTCCAGCCCCCCCGT
GACCTGGCTGTCTTCCAGGTCCGCTCCCGGGGATCAGATATCGAGGCTCT
GGTGAACGTGAACCTGAAGGCAGACTTTGAGAGCAAGTACTGGGCGGGTC
TTCTGGACGCGCAGGGCAAGGCCACGGGGGACTACTACTAA
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protein sequence of rna6687

>rna6687-protein ID=rna6687-protein|Name=rna6687|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MVNPVRDGGEASCAGARMRSGSKTSVYVGLAGVEKVLEEQRNLRYVSSPW
RRTGRDCRRVHPEATRLFKKKVQPEVNKHVST
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mRNA from alignment at CM002469.1:256544..256923+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6687 ID=rna6687|Name=rna6687|organism=Nannochloropsis gaditana|type=mRNA|length=380bp|location=Sequence derived from alignment at CM002469.1:256544..256923+ (Nannochloropsis gaditana)
ATGGTCAATCCAGtaagagatggaggagaggcgagCTGCGCGGGTGCACG
AGTAAGTAGGGAATAGGCGCCTCGCCTCACCCTCTCTGGCTGCTGCCGGG
CGTGCTGGAGTGTGAAGGCAAGTGAATGAGTGAGATGAGAAGTGGAAGCA
AGACGAGTGTTTATGTTGGAttggcgggggtggagaaaGTTCTAGAAGAA
CAAAGGAAGTCCCCTGATTTCTGCCTTGCCCTCGTGTTGCTTTAAATTGC
TCTGAGCCTTCGGTACGTCTCATCTCCATGGCGCCGGACGGGGCGGGACT
GTCGCCGGGTACACCCAGAGGCTACGCGACTTTTCAAAAAGAAAGTGCAA
CCAGAAGTCAATAAGCACGTTTCCACCTAG
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Coding sequence (CDS) from alignment at CM002469.1:256544..256923+

>rna6687 ID=rna6687|Name=rna6687|organism=Nannochloropsis gaditana|type=CDS|length=747bp|location=Sequence derived from alignment at CM002469.1:256544..256923+ (Nannochloropsis gaditana)
ATGGTCAATCCAGtaagagatggaggagaggcgagCTGCGCGGGTGCACG
AATGAGAAGTGGAAGCAAGACGAGTGTTTATGTTGGAttggcgggggtgg
agaaaGTTCTAGAAGAACAAAGGAACCTTCGGTACGTCTCATCTCCATGG
CGCCGGACGGGGCGGGACTGTCGCCGGGTACACCCAGAGGCTACGCGACT
TTTCAAAAAGAAAGTGCAACCAGAAGTCAATAAGCACGTTTCCACCTAGA
TGGTCAATCCAGtaagagatggaggagaggcgagCTGCGCGGGTGCACGA
ATGAGAAGTGGAAGCAAGACGAGTGTTTATGTTGGAttggcgggggtgga
gaaaGTTCTAGAAGAACAAAGGAACCTTCGGTACGTCTCATCTCCATGGC
GCCGGACGGGGCGGGACTGTCGCCGGGTACACCCAGAGGCTACGCGACTT
TTCAAAAAGAAAGTGCAACCAGAAGTCAATAAGCACGTTTCCACCTAGAT
GGTCAATCCAGtaagagatggaggagaggcgagCTGCGCGGGTGCACGAA
TGAGAAGTGGAAGCAAGACGAGTGTTTATGTTGGAttggcgggggtggag
aaaGTTCTAGAAGAACAAAGGAACCTTCGGTACGTCTCATCTCCATGGCG
CCGGACGGGGCGGGACTGTCGCCGGGTACACCCAGAGGCTACGCGACTTT
TCAAAAAGAAAGTGCAACCAGAAGTCAATAAGCACGTTTCCACCTAG
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Synonyms
Publications