rna6684, rna6684 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6684
Unique Name	rna6684
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3082
Alignment location	CM002469.1:251452..253189 +

Link to JBrowse

Properties


Property Name	Value
Product	WW/Rsp5/WWP
Orig transcript id	gnl\|cribi\|Naga_100040g35.1994.mrna
Orig protein id	gnl\|cribi\|Naga_100040g35.1994
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:251452..253189 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100040g35	gene6462	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6684	rna6684-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23996.1	cds6668	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:251452..253189+
coding sequence from alignment at CM002469.1:251452..253189+

mRNA sequence

>rna6684 ID=rna6684|Name=rna6684|organism=Nannochloropsis gaditana|type=mRNA|length=3082bp
ACACAATGTGCGACCAGCATTTTTATGCCATACCTCGAGATTAACATCCA
GCAATCCTTTTCCCCATGAAATACAGCACAAATGTACCACTGGTGCTAAG
GAGGCTTCTTGTCGTTTGCTTTGACTGTTCTCCGTCCAGCCGCACCCGTC
TTTTCGTTCTTCACCACTCCCGCGCCTCACTTTGCCCGCCGGTCCCTGCG
TGAAAAATATGCCTTTTCATGGCACAGAAGATCCTCTTAGCCCTTCCCGT
GGCTTAGCCCACACTCCACCTCGCAATAAGAGGACTCCAAGGTGCGCCAT
GGGCAATGAGTCTCAACCAGGCGATAATACTACGCCGATGCTTGGCATGA
CGGCACAGATGAAGAACGGCCAGCACGAAAGCCCGTCCCAAAGCACACCA
CGTTCATTCCTGCGCAAAGGGTCGCGAAGGGAGCCCTCTGCAATGCATCG
ACTCAAGTCTGGCATTTCTCCGTCTCCATCCTCTTCCTCGAAGCCGATTC
CTGTAACCCCCAGTAGCACCCGGAAGAGCAAACCTGCCCGCAAGCGCTCG
GAGCGGTCCCCCTTGGCGCTCGTCTCACAGGCACGGACGAGGGGCACGAC
CACCGAAGCCGTGAGGGCGACGGACTCGAAACAGGGCACTGCCATGGAGG
AACCGTTGCCCGGGCGGTCCTCATATCCTGTCCCCAGCCCCACCGAGGGC
TACTTGGGAGAAGGTGGAGGTGTGGGGGAGGAGACGTCTTGGAGGGAAGA
AAGGGAAAGCAAGTCCACGAGCCAAGAGAAAGTAGAGGTGCGCGAGCACA
GCTTCGACGGAAATGCGACGAAGAGCTTCGATCCGTACTGGCCGCCCTCG
GCCGCCGGGACCGCGGAAGCCCCGGACGTGATGGATGGAAGGGAGTGGAG
GATGCGCCTTTTCCACGCGGACAGCGAAGAGGAGGACCGAGAGGGGGGAG
GCTGGGACCAGGAGGGCGGGCGGTGTGAGGATCAGGCTTCGTTCCTGTGC
TCTGGCAGCGAAATGGCAGCGTGGCAGGCGCGGCACAGGGAGGAGATGAC
GGAGTTCGAGAGCCTGGAGCGGGCCTTGGCAGGGTTTCCCGCCATTTCTC
TCCAGGACGGGCCCGAGCCATGGGCTGCCAACGGGGTGCAAGGAATGGGA
TGGACGGCGGCGGTAGACCAGGAGGGACGTCCAGCGATAGTGGGGGAGGA
GGCGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACG
ACGAAGAGGACGAGGAGGACGAAATGGAACCAGGTCACGTCGGGGAGAAC
TTGACTGCTGACAGAGGAAGAGAAGATGGAAAGCAGCGCGGGAAGTTCCA
GGAAAACCGCACCAAAAGCCACTCGAACGAACGCTTCTGCGAGGGAAATG
TCGGTCTTCCCCCCCCACATCCTTCGTTCCCTTCCTCCCTCGACACCTGC
TTGAGCTGTGGCAGCCGGCGTGGGTCGTTGCTTTTAAAAGCGCTGGAAAA
CAAGCAGGAGGAGATCGAGCGGGAGCTGGCACGGGCAGAGAAGGAGACCA
AGGCGGCCGAAAAACAGCGACGCCGGTCCGAGGCCATGCTGGCCGAGGCC
CGGAGCCGGAAGGAGCAAGTGGAGGCATGGGCCGCCAGGGAGCGGGCGGC
AGTTGAGAAATGGCGCGAAGACCAACGGGAGTTGGTAGGCAAGGAGAAGA
AAGCTTTCCTCCGGGAGCAGGCGGCGGCAACGCGCTGTTTGGAAGTGCAA
CGCGCGTTGCCGACGCGGGAGGAACGGGTCGAGCGGGAGGCCCTGCTCGC
CACCATCGAGAAGATGAAGCTGGACGCCGAAGGGCAAAGGAAGAGATGGG
CCGCCAACAGCAAGCGGCAGGCGGCTCTGATCCAGGAGCAACAAGCCCGT
CTGGAGGAGCTTCAAGGCCAAGTGGAATCGGCGAAGACAGGGACGGCGAG
CCCCGGGCTTCGGTCAGGGATTGGGCCCAGAGGCCAGAACGCGTCGTCCA
TGTCCGCCGCAAGGCAGCCGAGGAACTTGCCCCTGCCGGCCTCCTCCCTT
TCCACCGGTCTCCGGGAGAGCAGGCCTTGCGCCCGTGTGGGCGCAAGGCC
TCTGTCCCATCCTACGTCCGCTTCCCCCCTCAGGCTTGAGAAAAAAGCAC
TCGGGGCTGGCCATTCTATGGGAGTCCCACCATGCTCTTTTTTGTCTCGG
CAGGGTGACGGAAAGGCAGGAGCGGAGGAAGGGACCAATGCCGTCCAAGA
GGGTAGCTCCCCCGGGTATCCCACCTCTCCAAGGCCGTACGGCGTTCGCG
AGTATACGGTGACACCCCCTTCTTCCGCCCAAAGCATCATCGGATGCACA
TCCGACTTGTCATGGGGCGGAGCAAGGACCTCACCATCGGCAGCCATCAT
CAGCGAGAGGCCGCCTCCTTTCGCCCCCCCTTATCATTACTTGCACCAAG
GCCAGGAGCTCTTTCGACGACCGCTACCTGTAGCCAAGCAGGACTCTCAA
CCTGCTTCTGGGGCAGAGGACTCTTCATCCTCTGTCCTTACGTCCGAAAA
GAAAGCAAAACAACCCGCCGCGTCAGGTAAAGGGGGAGGAGGAAAAACCA
TCCGCAAGCTTCCAGACGGCCGGGAGGAGTGGCACTACTCCAACGGCACG
GTCAAGGAGGTGCACCCGAACGGAAAGAGCATCGTACACTTTATGAACGG
AGACATCAAGACTGTCGAGGCGGGAACAGGGGACGTAGTCTACTGGTACG
CTGCCAATCAGACAAAGCATATCACAGTTGCTGCCTCGGGGTTGGAGATA
TTTGAGTTCCCTTCCGGTCAGGTGGAGCGGCACTACCCGAATGGAGTGCG
TGAGATCCAGCCACCTGGTATGGGGGTCATCAATGTGTAAGAGCGCGTGC
CTTCCTGTGAGCAGACAGTGGCAGGGCGGCACGTATCTGAAATGAGAGCC
AAACATGCGTTACTCAAGAGACGAATGGAAAGGACTTGAAGACGGAAAGC
AACATCAGAAGACGTATGTAAGAACAAAATAACGAAAAAAGACTCTTATT
GCACATCTTTATTTAATATGTCATCATAGAAA

protein sequence of rna6684

>rna6684-protein ID=rna6684-protein|Name=rna6684|organism=Nannochloropsis gaditana|type=polypeptide|length=530bp
MGKRQRGQGPRRPESGVVKQEYVNASGLVAYQSDSEADDEDVAPAEAVGS
IARHVVPRGHLIKNGPEVQNTGQAAKDEEYADPLKAAADVEDLFKSLEEE
FLQGASPQREVVKAAATASIGARQTDKKYLPAHALRQKIAHTPLVMFSEA
ELRRISGKDSSLRDLVVECLGKMNAMLAKYLNATKSDRSEADKLSGDGKS
GFVGVENWEVEFIKLSARVEDWRAGLLPSSSLVRRVRELGATVAAQVLAE
ETLCHGLKEAVKKKEKEAEASGASMTEVAGVTHTSTIGPVAAPTTPVWST
AYDPTYQSYYWHNAVTGETRWERPSGAGTEMAGASSESFAAPSTSTTTPE
AAPVLPFANALPVQTQNSLLLYVGDPPLLQTGSEASSLFRGAGLRHVRAL
GQGYFVVSFPSKAAVVEALMHQATTAGTVTMDVQSAQRGEKRRREEQEAS
KDVVERAGREWIPGDKSTFVRLVTEADEPGKIGAMPVVAVGGKGEAGDGR
DEDGPGGEREGNAVIMGQGNGGDWQAPVTT

mRNA from alignment at CM002469.1:251452..253189+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6684 ID=rna6684|Name=rna6684|organism=Nannochloropsis gaditana|type=mRNA|length=1738bp|location=Sequence derived from alignment at CM002469.1:251452..253189+ (Nannochloropsis gaditana)
ATGGGCAAACGACAACGAGGTCAAGGGCCTCGTCGACCGGAAAGCGGCGT
GGTCAAGCAGGAATACGTCAATGCGTCCGGGTAAGAGTGAAAACTAGAAG
CAAATAACAACGGAAAGGAAATATGGACCTGAAGGCTTCTGCTGTTGTCG
CATATCATACCTTGATCTTCACGTCAAAATCAACACAATATTATTATAGG
CTTGTTGCATATCAATCGGATTCCGAGGCAGATGATGAGGATGTAGCCCC
CGCGGAGGCAGTCGGAAGTATTGCGAGGCACGTGGTTCCTCGAGGGCATC
TTATCAAAAACGGCCCTGAAGTACAGAACACGGGacaggcggccaaggac
gaggaaTATGCTGATCCTTTGAAAGCAGCTGCAGACGTGGAAGATCTGTT
TAAGAGTCTTGAGGAAGAATTTTTGCAAGGTGCATCCCCACAGAGAGAAG
TCgtgaaagcagcagcaacggcGTCGATTGGGGCAAGACAAACAGATAAA
AAGTATCTTCCAGCGCATGCTTTACGACAAAAAATCGCCCATACGCCTCT
TGTTATGTTCAGTGAAGCAGAGCTCAGGCGCATAAGTGGGAAAGACTCGT
CCCTGCGAGATCTTGTGGTCGAGTGTCTTGGGAAGATGAATGCCATGTTA
GCCAAATACCTAAACGCAACGAAATCCGATCGCTCCGAGGCAGATAAGTT
ATCAGGAGATGGGAAATCGGGATTTGTCGGGGTGGAAAATTGGGAAGTTG
AGTTTATCAAGCTGTCGGCCCGTGTGGAGGATTGGAGGGCAGGCTTGCtg
ccgtcgtcctcccttgtgCGTCGCGTCAGGGAGTTGGGAGCGACCGTTGC
GGCACAagtgctggcggaggagacgctATGTCATGGGCTAAAAGAAGctg
tgaagaagaaggagaaggaggcggaggcgtcCGGGGCTTCAATGACGGAA
GTTGCTGGGGTGACTCACACGAGCACCATAGGCCCCGTGGCCGCCCCAAC
CACGCCCGTGTGGAGCACTGCCTACGATCCCACGTACCAAAGTTACTACT
GGCACAACGCAGTCACGGGTGAGACGCGGTGGGAACGCCCCTCGGGTGCA
GGCACGGAGATGGCGGGCGCGTCAAGTGAATCCTTTgccgcgccctccac
ctccaccacgacTCCTGAGgccgctcccgtccttcccttcgccaATGCCC
TGCCAGTGCAGACGCAGAACTCTCTGCTCCTGTACGTAGGTGATCCGCCG
CTCTTGCAGACAGGTTCGGAGGCCTCTAGCCTCTTCCGAGGCGCGGGTCT
TAGGCACGTCCGCGCCCTGGGGCAGGGATATTtcgtcgtctccttccctt
ccaaggccgccgtggTGGAGGCTTTGATGCACCAGGCAACGACCGCTGGC
ACCGTAACCATGGATGTGCAGAGTGCgcaaaggggagagaagcggagaag
ggaggagcaggaagcgagCAAGGATGTGGTCGAGCGCGCGGGGCGGGAGT
GGATCCCGGGTGACAAGTCCACGTTTGTCCGCCTGGTCACGGAGGCGGAC
GAACCGGGCAAGATCGGTGCGATGCCGGTAGttgcggtgggagggaaggg
ggaggcgggcgatgggagagacgaggatgggccggggggcgAGCGAGAGG
GCAACGCTGTAATAATGGGCCAGGGAAACGGAGGCGATTGGCAAGCACCC
GTAACTACGTAAAACAAAAGTACAACAAAAACGAATGC

Coding sequence (CDS) from alignment at CM002469.1:251452..253189+

>rna6684 ID=rna6684|Name=rna6684|organism=Nannochloropsis gaditana|type=CDS|length=3186bp|location=Sequence derived from alignment at CM002469.1:251452..253189+ (Nannochloropsis gaditana)
ATGGGCAAACGACAACGAGGTCAAGGGCCTCGTCGACCGGAAAGCGGCGT
GGTCAAGCAGGAATACGTCAATGCGTCCGGGCTTGTTGCATATCAATCGG
ATTCCGAGGCAGATGATGAGGATGTAGCCCCCGCGGAGGCAGTCGGAAGT
ATTGCGAGGCACGTGGTTCCTCGAGGGCATCTTATCAAAAACGGCCCTGA
AGTACAGAACACGGGacaggcggccaaggacgaggaaTATGCTGATCCTT
TGAAAGCAGCTGCAGACGTGGAAGATCTGTTTAAGAGTCTTGAGGAAGAA
TTTTTGCAAGGTGCATCCCCACAGAGAGAAGTCgtgaaagcagcagcaac
ggcGTCGATTGGGGCAAGACAAACAGATAAAAAGTATCTTCCAGCGCATG
CTTTACGACAAAAAATCGCCCATACGCCTCTTGTTATGTTCAGTGAAGCA
GAGCTCAGGCGCATAAGTGGGAAAGACTCGTCCCTGCGAGATCTTGTGGT
CGAGTGTCTTGGGAAGATGAATGCCATGTTAGCCAAATACCTAAACGCAA
CGAAATCCGATCGCTCCGAGGCAGATAAGTTATCAGGAGATGGGAAATCG
GGATTTGTCGGGGTGGAAAATTGGGAAGTTGAGTTTATCAAGCTGTCGGC
CCGTGTGGAGGATTGGAGGGCAGGCTTGCtgccgtcgtcctcccttgtgC
GTCGCGTCAGGGAGTTGGGAGCGACCGTTGCGGCACAagtgctggcggag
gagacgctATGTCATGGGCTAAAAGAAGctgtgaagaagaaggagaagga
ggcggaggcgtcCGGGGCTTCAATGACGGAAGTTGCTGGGGTGACTCACA
CGAGCACCATAGGCCCCGTGGCCGCCCCAACCACGCCCGTGTGGAGCACT
GCCTACGATCCCACGTACCAAAGTTACTACTGGCACAACGCAGTCACGGG
TGAGACGCGGTGGGAACGCCCCTCGGGTGCAGGCACGGAGATGGCGGGCG
CGTCAAGTGAATCCTTTgccgcgccctccacctccaccacgacTCCTGAG
gccgctcccgtccttcccttcgccaATGCCCTGCCAGTGCAGACGCAGAA
CTCTCTGCTCCTGTACGTAGGTGATCCGCCGCTCTTGCAGACAGGTTCGG
AGGCCTCTAGCCTCTTCCGAGGCGCGGGTCTTAGGCACGTCCGCGCCCTG
GGGCAGGGATATTtcgtcgtctccttcccttccaaggccgccgtggTGGA
GGCTTTGATGCACCAGGCAACGACCGCTGGCACCGTAACCATGGATGTGC
AGAGTGCgcaaaggggagagaagcggagaagggaggagcaggaagcgagC
AAGGATGTGGTCGAGCGCGCGGGGCGGGAGTGGATCCCGGGTGACAAGTC
CACGTTTGTCCGCCTGGTCACGGAGGCGGACGAACCGGGCAAGATCGGTG
CGATGCCGGTAGttgcggtgggagggaagggggaggcgggcgatgggaga
gacgaggatgggccggggggcgAGCGAGAGGGCAACGCTGTAATAATGGG
CCAGGGAAACGGAGGCGATTGGCAAGCACCCGTAACTACGTAAATGGGCA
AACGACAACGAGGTCAAGGGCCTCGTCGACCGGAAAGCGGCGTGGTCAAG
CAGGAATACGTCAATGCGTCCGGGCTTGTTGCATATCAATCGGATTCCGA
GGCAGATGATGAGGATGTAGCCCCCGCGGAGGCAGTCGGAAGTATTGCGA
GGCACGTGGTTCCTCGAGGGCATCTTATCAAAAACGGCCCTGAAGTACAG
AACACGGGacaggcggccaaggacgaggaaTATGCTGATCCTTTGAAAGC
AGCTGCAGACGTGGAAGATCTGTTTAAGAGTCTTGAGGAAGAATTTTTGC
AAGGTGCATCCCCACAGAGAGAAGTCgtgaaagcagcagcaacggcGTCG
ATTGGGGCAAGACAAACAGATAAAAAGTATCTTCCAGCGCATGCTTTACG
ACAAAAAATCGCCCATACGCCTCTTGTTATGTTCAGTGAAGCAGAGCTCA
GGCGCATAAGTGGGAAAGACTCGTCCCTGCGAGATCTTGTGGTCGAGTGT
CTTGGGAAGATGAATGCCATGTTAGCCAAATACCTAAACGCAACGAAATC
CGATCGCTCCGAGGCAGATAAGTTATCAGGAGATGGGAAATCGGGATTTG
TCGGGGTGGAAAATTGGGAAGTTGAGTTTATCAAGCTGTCGGCCCGTGTG
GAGGATTGGAGGGCAGGCTTGCtgccgtcgtcctcccttgtgCGTCGCGT
CAGGGAGTTGGGAGCGACCGTTGCGGCACAagtgctggcggaggagacgc
tATGTCATGGGCTAAAAGAAGctgtgaagaagaaggagaaggaggcggag
gcgtcCGGGGCTTCAATGACGGAAGTTGCTGGGGTGACTCACACGAGCAC
CATAGGCCCCGTGGCCGCCCCAACCACGCCCGTGTGGAGCACTGCCTACG
ATCCCACGTACCAAAGTTACTACTGGCACAACGCAGTCACGGGTGAGACG
CGGTGGGAACGCCCCTCGGGTGCAGGCACGGAGATGGCGGGCGCGTCAAG
TGAATCCTTTgccgcgccctccacctccaccacgacTCCTGAGgccgctc
ccgtccttcccttcgccaATGCCCTGCCAGTGCAGACGCAGAACTCTCTG
CTCCTGTACGTAGGTGATCCGCCGCTCTTGCAGACAGGTTCGGAGGCCTC
TAGCCTCTTCCGAGGCGCGGGTCTTAGGCACGTCCGCGCCCTGGGGCAGG
GATATTtcgtcgtctccttcccttccaaggccgccgtggTGGAGGCTTTG
ATGCACCAGGCAACGACCGCTGGCACCGTAACCATGGATGTGCAGAGTGC
gcaaaggggagagaagcggagaagggaggagcaggaagcgagCAAGGATG
TGGTCGAGCGCGCGGGGCGGGAGTGGATCCCGGGTGACAAGTCCACGTTT
GTCCGCCTGGTCACGGAGGCGGACGAACCGGGCAAGATCGGTGCGATGCC
GGTAGttgcggtgggagggaagggggaggcgggcgatgggagagacgagg
atgggccggggggcgAGCGAGAGGGCAACGCTGTAATAATGGGCCAGGGA
AACGGAGGCGATTGGCAAGCACCCGTAACTACGTAA

Synonyms

Publications