rna6680, rna6680 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6680
Unique Name	rna6680
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1533
Alignment location	CM002469.1:240281..241823 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100040g31.2009.mrna
Orig protein id	gnl\|cribi\|Naga_100040g31.2009
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:240281..241823 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100040g31	gene6458	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6680	rna6680-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24011.1	cds6664	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:240281..241823-
coding sequence from alignment at CM002469.1:240281..241823-

mRNA sequence

>rna6680 ID=rna6680|Name=rna6680|organism=Nannochloropsis gaditana|type=mRNA|length=1533bp
GCGGCGTGACCAGAAATGTGTCGAGGAGAACGTGTTAGCGGCCACGCGTT
CTGCAAAAGGAACGAAAAAGATGTGGCATATCTATGGTCCCAGACACCTA
CTTCTCATATTATTCGCGTTCACAGGCCAAGTTTTCCTTATCCATTTTCC
GACGAGAAAACAAGTGTGGCAAGACTGAATTGGAAATACGGAAGTAGTGG
TGCTTCCTGGAAAAAACACAAGACCAGCAGCACTCTCTCACAAGCAAAAA
GTCATCAATGTCGGGCAGAGGACGTGGAGGTGGCCGTGGTCGTGGTGCAG
GGCGCGGCCGGGGTGGAGATAGGGGCAGGGACGGGCAAGATGGACTCGGA
AGGCCTGGGAAGGAAAGGTGTTCAAATAATAACGGGAGCGATGTTAGGGA
ATTTGAGGACGAATTCGACATGGTGCAAGCAAGACGACAAATAAAAGGCG
AGGAGGAGGATGATTACGATGCAGGAGCGACAGGAGGCCAGGACGTGGAG
GGCGACGACGACGAGGAGGACGACGAGCGGAAGGTAAGGCGCATGACCAA
ACAGTTCGCGTGGGAGGAGGAGAGGATGGAGGAGGAGTTCAACGAAGCCG
GGGACAAAATGGAGCCTTTCAATTTGAAAAATGAGCGGACGGAGGGTTTT
TTCGACGAAACGGGCAATTTTGTGTGGAAAAAGGAGGAAGGGGGCGAAGA
TGCCTGGTTGGCCTCTTTGGAAAACGAGGAGGATTTGGAGGCTCGCATTG
GCGAGGCCGCGGTGGCGCGGAAGAAAAAGGACGATGAGGATGCAGAGGGT
GAGGAGCCGCCCGAGTTCGTGGACCAATGGGCTTTGAAGGAAAGGCTGCT
AACGTTCCTGCGACCCGGAGAGACCGTCCTGGCGCTGAAACGACTGGGCC
CTCGGGAGGGAAGGAAGGAGGGGGGAGGGGTTGAAGCGGGGGGTAAAGCA
ATGGTGCAGAAGCGTGTGGATGTCCGAACGCCGGAAGAAAAGGAGGCATT
CGAGCAGGTGACGGAGCTAGCGGACCAGCTTCTGCGGGCGGGGGCGGTGG
AGGTGTATGACGTGGCGTATGAGGCCATGCGGGCAGGCCTGGAAGGAGGG
GACGAAGGGCGGAGGGGGGGGCGAAAGCGGCCGGCGGTGGGCATGAGCAG
GGATGGGGGCGAGGTCCTGTGGGAGTACAAGGGGCCCGACGGCTTGGTGC
ATGGGCCCTACAGCAGCGAGACCATCCGGGCCTGGCGGGCGCAGGGCTTC
TTCACGGGGCCGACGGCGGTGGAGATGAGGAGGGTGGGAAGCGGCACCGG
GGCTACAAAGCAGGTAGGGGAGCCGAGTAGGAAGAAGGTGACGTTCAGTG
TCGCGACGCTGGCGGCAGACTTTGAGGACGATGAGGAGGGAGGGGGCCAG
GGGGGCAGGGAGGCAGGGGCAAGAGAGGGGGAGTGGGTGGGTTCCGATGC
CATCGATTGGTCGGCTCAGACGTGATAAAAAAAGTGGGGTCGAACGCCTG
CATTTTAGAGCACAAATCAATCAAACTCAACCA

protein sequence of rna6680

>rna6680-protein ID=rna6680-protein|Name=rna6680|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MAPRTNFPVKMKVFFSLAVLIVCMQAVMGFMPTAPLRTRQVMKMSATDNK
VTEVVKAGKTALAGLTPLILSSPVFATEGTGEALGVDDPRILPLVASIGA
AFAFLFSSWSNKQDNEEFFNGYQDTERKATTATVATIHRRAPAVDRGGRG
NEDTRPWRWGDPLPGSSEGDGPGSLLARVPRRQASRRGFGSLVEAACRRL
KGAGDGNERRKKKERDCKSGKEPSRTSQPG

mRNA from alignment at CM002469.1:240281..241823-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6680 ID=rna6680|Name=rna6680|organism=Nannochloropsis gaditana|type=mRNA|length=1543bp|location=Sequence derived from alignment at CM002469.1:240281..241823- (Nannochloropsis gaditana)
ATGGTTTGTCTTTTTGCTCATAAATAGGCGTGTAGGCGAGGTGAATAGCA
TGAAAATTGGGGTCGAGGGTCTTCACCCGTCATCCTTCCCTTTGAAGAAG
GCACTGATTGAATTCAGGATATATCTCGGCCGCCGTGGAGAGAGAGATAT
GAGCATGCTATGTTTGCAGGGAGTGGTCGTGCAACCTGTGTCTGTCGCTC
GCAATCCCCACTTATTTAATGTTGTGTCTGACATCTTGGCGGCGAGGGGC
TTGCGGCGGTACTGCCTGCTTGCTGATGGCTGTGGCAGTTGCATGGGAGA
GCTTTGCTCGCGTTCCTCGCACGGTACCCAACAGCAACCCTTCTTCCTTC
CAGCCTCCCTTCTCGAACTTTTGCGACCTGAGAGCCACAGTAAACTGGGA
GCAAGGATATTGCTTGTCGCTATTCATGCGTGCGTGGCTTCATGACAACG
AAATCGTTTCTGTTGTGCGTACTATTTTCGCAGATGTCCATGACGTCTTC
GCCCGTTCTCCCTTTCTCGCACGAAACAGGCCCCTCGCACCAACTTTCCA
GTCAAAATGAAGGTCTTCTTCTCCCTCGCTGTACTTATCGTCTGCATGCA
GGCTGTGATGGGGTTCATGCCCACAGCACCCCTCCGCACCCGCCAGGTCA
TGAAGATGTCGGCTACCGACAACAAGGTCACCGAGGTGGTCAAGGCCGGC
AAGACCGCCCTTGCTGGCCTCACGCCCCTCATTCTGTCTTCCCCCGTCTT
CGCCACGGAGGGAACGGGCGAGGTAGGTATTTTAACGGGAAGTGAAAAGG
GAGGATGGTACATGCAGCTATGATGGTCGGCGTGTATCTCGGGCAAACCA
GTAAGTTCCTGCGCCGCAACCTCGTCATGAGACAGTCCCGTTTCTCCCAC
GTCTTCCGCAGGCCCTGGGCGTTGATGACCCCCGCATCCTGCCCCTGGTC
GCCTCCATCGGCGCCGCGTTCGCCTTCCTTTTCTCCAGCTGGTCGAACAA
GCAGGACAACGAGGAGTTCTTCAACGGCTACCAGGACACGGAGCGCAAGG
TAAGAGGCAGCGAGTCGAGGCCTTGTGATAGACGCTCTTGTGTCAGCCCC
GGGCATCTTTTGGGCGTGGATTGCGCTTCTTCGGGGACTTAGGCATAAAT
TGTCGTGCCTCGGCGCGGAACCTGAAGCCTCATTGTCGCTTTCCCCTTTC
TCTTTCGATCCCCCCGGTATCGCAGTAAATATAGGCGACGACAGCCACTG
TCGCGACCATCCACCGACGAGCCCCAGCGGTGGACAGAGGCGGGCGTGGG
AACGAGGACACGAGGCCCTGGAGGTGGGGGGACCCTCTGCCAGGAAGCTC
TGAGGGGGACGGTCCAGGTAGTTTACTGGCCCGGGTGCCTCGGCGTCAGG
CGTCGAGGAGAGGGTTTGGGAGCCTAGTGGAAGCCGCGTGCCGACGCTTG
AAGGGGGCGGGCGATGGGAACGAAAGAAGAAAGAAAAAAGAGCGCGACTG
CAAAAGCGGAAAGGAACCGTCTCGGACCTCCCAGCCTGGTTGA

Coding sequence (CDS) from alignment at CM002469.1:240281..241823-

>rna6680 ID=rna6680|Name=rna6680|organism=Nannochloropsis gaditana|type=CDS|length=2772bp|location=Sequence derived from alignment at CM002469.1:240281..241823- (Nannochloropsis gaditana)
GCGACGACAGCCACTGTCGCGACCATCCACCGACGAGCCCCAGCGGTGGA
CAGAGGCGGGCGTGGGAACGAGGACACGAGGCCCTGGAGGTGGGGGGACC
CTCTGCCAGGAAGCTCTGAGGGGGACGGTCCAGGTAGTTTACTGGCCCGG
GTGCCTCGGCGTCAGGCGTCGAGGAGAGGGTTTGGGAGCCTAGTGGAAGC
CGCGTGCCGACGCTTGAAGGGGGCGGGCGATGGGAACGAAAGAAGAAAGA
AAAAAGAGCGCGACTGCAAAAGCGGAAAGGAACCGTCTCGGACCTCCCAG
CCTGGTTGAGCCCTGGGCGTTGATGACCCCCGCATCCTGCCCCTGGTCGC
CTCCATCGGCGCCGCGTTCGCCTTCCTTTTCTCCAGCTGGTCGAACAAGC
AGGACAACGAGGAGTTCTTCAACGGCTACCAGGACACGGAGCGCAAGGCC
CCTCGCACCAACTTTCCAGTCAAAATGAAGGTCTTCTTCTCCCTCGCTGT
ACTTATCGTCTGCATGCAGGCTGTGATGGGGTTCATGCCCACAGCACCCC
TCCGCACCCGCCAGGTCATGAAGATGTCGGCTACCGACAACAAGGTCACC
GAGGTGGTCAAGGCCGGCAAGACCGCCCTTGCTGGCCTCACGCCCCTCAT
TCTGTCTTCCCCCGTCTTCGCCACGGAGGGAACGGGCGAGATGGCGACGA
CAGCCACTGTCGCGACCATCCACCGACGAGCCCCAGCGGTGGACAGAGGC
GGGCGTGGGAACGAGGACACGAGGCCCTGGAGGTGGGGGGACCCTCTGCC
AGGAAGCTCTGAGGGGGACGGTCCAGGTAGTTTACTGGCCCGGGTGCCTC
GGCGTCAGGCGTCGAGGAGAGGGTTTGGGAGCCTAGTGGAAGCCGCGTGC
CGACGCTTGAAGGGGGCGGGCGATGGGAACGAAAGAAGAAAGAAAAAAGA
GCGCGACTGCAAAAGCGGAAAGGAACCGTCTCGGACCTCCCAGCCTGGTT
GAGCCCTGGGCGTTGATGACCCCCGCATCCTGCCCCTGGTCGCCTCCATC
GGCGCCGCGTTCGCCTTCCTTTTCTCCAGCTGGTCGAACAAGCAGGACAA
CGAGGAGTTCTTCAACGGCTACCAGGACACGGAGCGCAAGGCCCCTCGCA
CCAACTTTCCAGTCAAAATGAAGGTCTTCTTCTCCCTCGCTGTACTTATC
GTCTGCATGCAGGCTGTGATGGGGTTCATGCCCACAGCACCCCTCCGCAC
CCGCCAGGTCATGAAGATGTCGGCTACCGACAACAAGGTCACCGAGGTGG
TCAAGGCCGGCAAGACCGCCCTTGCTGGCCTCACGCCCCTCATTCTGTCT
TCCCCCGTCTTCGCCACGGAGGGAACGGGCGAGATGGCGACGACAGCCAC
TGTCGCGACCATCCACCGACGAGCCCCAGCGGTGGACAGAGGCGGGCGTG
GGAACGAGGACACGAGGCCCTGGAGGTGGGGGGACCCTCTGCCAGGAAGC
TCTGAGGGGGACGGTCCAGGTAGTTTACTGGCCCGGGTGCCTCGGCGTCA
GGCGTCGAGGAGAGGGTTTGGGAGCCTAGTGGAAGCCGCGTGCCGACGCT
TGAAGGGGGCGGGCGATGGGAACGAAAGAAGAAAGAAAAAAGAGCGCGAC
TGCAAAAGCGGAAAGGAACCGTCTCGGACCTCCCAGCCTGGTTGAGCCCT
GGGCGTTGATGACCCCCGCATCCTGCCCCTGGTCGCCTCCATCGGCGCCG
CGTTCGCCTTCCTTTTCTCCAGCTGGTCGAACAAGCAGGACAACGAGGAG
TTCTTCAACGGCTACCAGGACACGGAGCGCAAGGCCCCTCGCACCAACTT
TCCAGTCAAAATGAAGGTCTTCTTCTCCCTCGCTGTACTTATCGTCTGCA
TGCAGGCTGTGATGGGGTTCATGCCCACAGCACCCCTCCGCACCCGCCAG
GTCATGAAGATGTCGGCTACCGACAACAAGGTCACCGAGGTGGTCAAGGC
CGGCAAGACCGCCCTTGCTGGCCTCACGCCCCTCATTCTGTCTTCCCCCG
TCTTCGCCACGGAGGGAACGGGCGAGATGGCGACGACAGCCACTGTCGCG
ACCATCCACCGACGAGCCCCAGCGGTGGACAGAGGCGGGCGTGGGAACGA
GGACACGAGGCCCTGGAGGTGGGGGGACCCTCTGCCAGGAAGCTCTGAGG
GGGACGGTCCAGGTAGTTTACTGGCCCGGGTGCCTCGGCGTCAGGCGTCG
AGGAGAGGGTTTGGGAGCCTAGTGGAAGCCGCGTGCCGACGCTTGAAGGG
GGCGGGCGATGGGAACGAAAGAAGAAAGAAAAAAGAGCGCGACTGCAAAA
GCGGAAAGGAACCGTCTCGGACCTCCCAGCCTGGTTGAGCCCTGGGCGTT
GATGACCCCCGCATCCTGCCCCTGGTCGCCTCCATCGGCGCCGCGTTCGC
CTTCCTTTTCTCCAGCTGGTCGAACAAGCAGGACAACGAGGAGTTCTTCA
ACGGCTACCAGGACACGGAGCGCAAGGCCCCTCGCACCAACTTTCCAGTC
AAAATGAAGGTCTTCTTCTCCCTCGCTGTACTTATCGTCTGCATGCAGGC
TGTGATGGGGTTCATGCCCACAGCACCCCTCCGCACCCGCCAGGTCATGA
AGATGTCGGCTACCGACAACAAGGTCACCGAGGTGGTCAAGGCCGGCAAG
ACCGCCCTTGCTGGCCTCACGCCCCTCATTCTGTCTTCCCCCGTCTTCGC
CACGGAGGGAACGGGCGAGATG

Synonyms

Publications