rna668, rna668 (mRNA) Nannochloropsis gaditana

Overview
Namerna668
Unique Namerna668
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2601
Alignment locationCM002456.1:122736..124216 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100977g1.10343.mrna
Orig protein idgnl|cribi|Naga_100977g1.10343
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:122736..124216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100977g1gene641Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30005.1cds668Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna668rna668-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna668 ID=rna668|Name=rna668|organism=Nannochloropsis gaditana|type=mRNA|length=2601bp
ATGCGACGGATAAAAATCGAAGGACTTATTCAAGCCGTGGGCTTTGGGCA
CAAGCGGCGCACGCGGGTCTTGGACGAGATAGAACGGGAGGAGGAAGCGG
AATGGATGCTGGAGCAGCTCAGGCTTCCCTACGGTGGAGATCGCAGCAAG
CAGCGGGAGGCCGTCAAAAAGGTCCTGGAATTCCTCCAAGTGGACCTCTA
CGATGTGCCCTTCCTGTGGGCGTACCGTCGAGACTACTTCGCCCCCCACC
TGCCCGATCGCGCCCATCTCTGGTCGATTACCCGACTCGACGATAAATGG
GAAGAACTTCAACGACGCAAATCCTTCGCTTTGGCACGCTTCGAACGTTT
TTCAGCCGGACATCACGGGTATTCCTCCCGCAAGGCAATGGACCAAGAGG
CGCGAAAAGCCGCCCTTCAGGAGGTGGAGGCACGGTTGAAAGAGGCCGAG
GCAGGCGTGGAGGAGTGGAAGGAGAAGGTGAAAACCTTGCAGGACAAAGA
AGATACCCGGATGATTGGAGGCGACGACGAGGAAGAAGACGAGTTCGCGG
AAGAAAGTGCCTCCCTTCCCCAGGCGAAAGAAGCCCTGGCCTCTTTCACT
GACCAAAAGGAGGCTGCCTTGAACGATCTTGCTGCTCTAGAGGCTGAGAT
GGAGGCCGCAGAGAGGGAAAAGGAGAAGAGAGAAAGTAACGGGCAGTGGG
AAGAATTGGAGCCGGTGGAGGAGGAGGAGGAAGAGGAGCTGCGTCGCCTG
TGCCCAGACAGCTACCGGACGATGCTGGATGCCTCCCGGGAGGAGGAAGG
GGTCCGAGACCTGCACGAGTACTTGGGTGTAATTGGCCAGGAAACCAGCC
GACGGGCTCATCGACTTGCATTTGATCTCTACCGGAAATGCCGCTCCTTG
AAGGGCTTGCGCCGATTTGCGTCCCTTTTCAGTTGCCCGGCACCGGAGCT
TGGCGCAGCTTTGCACGCAAGTCGCACGAGTGGAGGGGATTTGGACGAAC
AGCACCGCCCCTTAATTCCCACCCCGAACATGTATCCCGAGAACGCCGCC
GCCGAATACACGACCCCAAGTCTGCCTAAGTACGAAGAAGTCCTTCGGGC
TGCCAAGCACATGCTGGCCATGGAGCTTGCCCACGAGCCTCGCCTCCGCG
CGTGCTTCCGACAGATTTACCGCGCCGAGGCGACTTTGACTACGCATCCC
ACTATCAAGGGCCACAATGAAATCACGGATCAGTTCCACCGGCTCCATGG
CTTCCAATTCATCAACAAGAAGCCCCTCTACGAATTCTTGCAACCCCCGA
GCGACTCCCAGCCCGACCTCTTCCTCAGGATCATGCAAGCTGAGCGGGAA
GGTTTTATCACTTTCACCATCGACGCTCCTGCCAATACGGCCGCTGAATC
GACCAGCTGGACCCCGAATGGGAGCTCGGCCTGGCCTAGTCTTCTCCAAA
CCTTGGAGGGACTCTATATGCCTTACCGAACGGCCTCTCTCGACACCAGC
CTTGTGGACGCCTGGAACGAGCAGCGAAAGGATATTCTCTCGCTTACCCT
TTCTTCCCACATCTTGCCCATGTTGGAGGCGGAAGTGAAGCGGGAAATGG
CGCGAAAAGCTCAAGAAGCTGTCGTTGCTGCTGCGGCAGATGCTTTGCGG
GAAGTAGTCAATACAGGCACCTACATGCCTCAATATAGGAATATCAATTG
CACTCTCATCCCACCATTCGAGGATTTTCAGCTTCGGCTCTCCCAACGAT
TTCCTTTCGAGCTGACGCCTTTGTCCTCCTCGTCTCTGGAAGTGGTGGCC
GTCTTCCAGGCGTCCTCGCGCCAAGAGGCGTCCTTCGCTGTCTCCGTGGG
GAGAGACGGGGCAGTGCGGGACTATGTCATGCTCCCTCCTCTGCGGTCTG
GCTACGACGGCGACGCTGACCAGCGAGATAAACTCCAGAAGATCATAGTA
GAGGCCAAGCCGGCTGTTGTGGTGGTAAATGCCGTGGTGGGCGGCTATGA
AGCTTTGCGGATGAAAGAGCGTCTCGCCAAGGTGGTCGACAACGTGGCTC
GCTTGTACCAACATGGAGAGCTAGCTGCCGAGGATGAAGAAGGGTGGGAA
CCCTGCGAGGTCCTCCTGATTGACGATCATCTTGCCAGTGTTTATGCCCG
CTCTCCTCGCGTCAAGAAAGAATTCACAGATTACCACGATAACTTGCGAA
TCGCCATCGGCATGGCGCGACAAATGCAGGACCCGCTTGCTCTGGTCACT
CTCATATACGCTGCCCAAGATCCTAGGGGAGGGCGTTTCGGCGGTCCTGG
GTACCAGCTTTCGTATCTCTCTCTGCATGACCTCCAGGACCAAGTGAACC
CTCATGAGCTGTCTCGGCGGTGGGAAGAGGTGCTGGTCGACGCGGTCAAC
GACGTGGGGGTGGACTTGAACAAAAGCATCTCGAGCCTTCACTTAGCCGG
TCTGCTCCCTTTCGTTTCGGGGCTGGGTTTTCGCAAGGCCAACGCCTTGC
GTGCCGCCATTCGAAACACTCACGGGAGCCTCGTGGTATCTCGAGCCCAG
CTGATCGAGGAAGGACTACTCACGCCCAAGGTGGGTCAAAGAGGAGGATA
G
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protein sequence of rna668

>rna668-protein ID=rna668-protein|Name=rna668|organism=Nannochloropsis gaditana|type=polypeptide|length=394bp
MRECWDSMDLTTFVRQRVDGASGRLIVGIVTSKDMEARTLECRKRDGSMF
TSYLRALYMQDERGVVKLSLWGRRLAETVGSRLNIGDLILVSHATVDRFL
GVKGFKASGLHSHVVVVPNRSHAPRLIRSMLTQDAWSQEDEESYRALLRR
VEAVWQWREVEELRRAGEKEQRNERAGGFDEGLRMGREDGRVEGRVRRWE
WSPGNARRTEGGGKGRFEVVDEVGVVHVLELTESVEGVSALVDALTRRKD
AEWGEEAEEEGEGGEAVRFENLGSAVGRGGFLLPVVVEKTRVLRLPRDRR
VRSRRTGQGEGGRVLSVQEARELVEEEGGKSAWLPADDKGGQGRGDDGEE
GRLERVGSDLDLPPRGGRVVNVRGLITLARVVLEGGGRGRGRKR
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mRNA from alignment at CM002456.1:122736..124216-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna668 ID=rna668|Name=rna668|organism=Nannochloropsis gaditana|type=mRNA|length=1481bp|location=Sequence derived from alignment at CM002456.1:122736..124216- (Nannochloropsis gaditana)
GAAACCACAAGAGAGACATAATGCAGACACGTCTGTGATGGGGTCTGGTA
TTTTTCCGCATTAAGGAGAACGAATGCTCAATTTTGCTATTATATGTAAC
GAATGCGACCTTGTTCATGTCACCGAGCATGTTAGTGTTCTAATAATTCT
GTTTTTCATCATCCATGTGTACAAAATGTACTGCAGCGGTACGCGTTGGA
AGGTTCAAATGAAGCTGTGGCCGTCACTCTCCGCCTCGTCTTTCGGACAC
GTCCGCCATCCTCTTTCCATTGCCTGCTGAAGGCAGTCTATTGACCATGA
GGGAGTGTTGGGATAGTATGGACCTAACAACATTTGTCCGCCAGCGGGTC
GACGGAGCGTCTGGACGGCTGATCGTGGGCATTGTCACCTCCAAGGACAT
GGAAGCGCGGACCTTAGAATGCCGTAAACGGGATGGGTCTATGTTCACAT
CCTACCTTCGCGCTCTTTACATGCAGGACGAGAGAGGCGTGGTCAAACTC
AGCCTTTGGGGTCGACGCTTGGCGGAAACGGTGGGGTCTCGGTTGAACAT
CGGCGACCTGATCCTCGTCTCCCACGCCACCGTCGACCGGTTTCTGGGTG
TCAAAGGCTTCAAAGCATCCGGACTGCATTCCCATGTGGTTGTCGTGCCA
AATCGGAGCCACGCACCGCGTCTCATCCGCAGCATGTTGACGCAGGATGC
ATGGAGTCAGGAGGACGAGGAAAGCTACCGGGCGCTGTTGAGAAGGGTTG
AAGCCGTGTGGCAGTGGAGGGAGGTGGAAGAGCTGCGGAGGGCGGGAGAG
AAAGAGCAAAGGAATGAGAGGGCGGGAGGGTTCGATGAGGGCTTGAGGAT
GGGGAGGGAGGACGGGCGAGTGGAAGGGCGAGTGAGGAGGTGGGAGTGGA
GCCCGGGGAATGCGAGGAGGACGGAGGGCGGGGGAAAAGGGAGGTTCGAG
GTCGTGGACGAGGTTGGCGTGGTGCATGTCTTGGAGCTGACGGAGAGTGT
TGAAGGGGTTTCGGCCTTAGTGGATGCACTGACAAGGAGGAAGGACGCGG
AGTGGGGGGAGGAGGCGGAGGAGGAAGGGGAGGGAGGGGAGGCTGTGCGT
TTCGAGAATTTGGGGAGTGCGGTGGGACGAGGAGGGTTTCTACTACCCGT
GGTGGTTGAAAAGACGAGAGTGTTGCGTTTGCCCCGGGACCGTAGGGTGA
GAAGCAGACGGACAGGGCAGGGGGAGGGAGGGAGGGTGCTGAGCGTCCAG
GAAGCGCGGGAGCTCGTGGAAGAGGAGGGAGGAAAGAGCGCTTGGCTGCC
CGCGGACGACAAAGGAGGGCAAGGGCGGGGGGATGATGGGGAGGAGGGGC
GGCTGGAGCGAGTGGGAAGCGACCTGGACCTTCCCCCTCGCGGAGGGAGG
GTGGTGAATGTCCGAGGTTTGATAACCCTAGCCCGCGTGGTGCTGGAAGG
GGGGGGGAGGGGCCGGGGGAGGAAGAGGTAG
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Coding sequence (CDS) from alignment at CM002456.1:122736..124216-

>rna668 ID=rna668|Name=rna668|organism=Nannochloropsis gaditana|type=CDS|length=1185bp|location=Sequence derived from alignment at CM002456.1:122736..124216- (Nannochloropsis gaditana)
ATGAGGGAGTGTTGGGATAGTATGGACCTAACAACATTTGTCCGCCAGCG
GGTCGACGGAGCGTCTGGACGGCTGATCGTGGGCATTGTCACCTCCAAGG
ACATGGAAGCGCGGACCTTAGAATGCCGTAAACGGGATGGGTCTATGTTC
ACATCCTACCTTCGCGCTCTTTACATGCAGGACGAGAGAGGCGTGGTCAA
ACTCAGCCTTTGGGGTCGACGCTTGGCGGAAACGGTGGGGTCTCGGTTGA
ACATCGGCGACCTGATCCTCGTCTCCCACGCCACCGTCGACCGGTTTCTG
GGTGTCAAAGGCTTCAAAGCATCCGGACTGCATTCCCATGTGGTTGTCGT
GCCAAATCGGAGCCACGCACCGCGTCTCATCCGCAGCATGTTGACGCAGG
ATGCATGGAGTCAGGAGGACGAGGAAAGCTACCGGGCGCTGTTGAGAAGG
GTTGAAGCCGTGTGGCAGTGGAGGGAGGTGGAAGAGCTGCGGAGGGCGGG
AGAGAAAGAGCAAAGGAATGAGAGGGCGGGAGGGTTCGATGAGGGCTTGA
GGATGGGGAGGGAGGACGGGCGAGTGGAAGGGCGAGTGAGGAGGTGGGAG
TGGAGCCCGGGGAATGCGAGGAGGACGGAGGGCGGGGGAAAAGGGAGGTT
CGAGGTCGTGGACGAGGTTGGCGTGGTGCATGTCTTGGAGCTGACGGAGA
GTGTTGAAGGGGTTTCGGCCTTAGTGGATGCACTGACAAGGAGGAAGGAC
GCGGAGTGGGGGGAGGAGGCGGAGGAGGAAGGGGAGGGAGGGGAGGCTGT
GCGTTTCGAGAATTTGGGGAGTGCGGTGGGACGAGGAGGGTTTCTACTAC
CCGTGGTGGTTGAAAAGACGAGAGTGTTGCGTTTGCCCCGGGACCGTAGG
GTGAGAAGCAGACGGACAGGGCAGGGGGAGGGAGGGAGGGTGCTGAGCGT
CCAGGAAGCGCGGGAGCTCGTGGAAGAGGAGGGAGGAAAGAGCGCTTGGC
TGCCCGCGGACGACAAAGGAGGGCAAGGGCGGGGGGATGATGGGGAGGAG
GGGCGGCTGGAGCGAGTGGGAAGCGACCTGGACCTTCCCCCTCGCGGAGG
GAGGGTGGTGAATGTCCGAGGTTTGATAACCCTAGCCCGCGTGGTGCTGG
AAGGGGGGGGGAGGGGCCGGGGGAGGAAGAGGTAG
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Synonyms
Publications