rna6676, rna6676 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6676
Unique Name	rna6676
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1578
Alignment location	CM002469.1:231638..234288 -

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF647
Orig transcript id	gnl\|cribi\|Naga_100040g26.2003.mrna
Orig protein id	gnl\|cribi\|Naga_100040g26.2003
Gene	OAT
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:231638..234288 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
OAT	gene6454	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24005.1	cds6660	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6676	rna6676-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:231638..234288-
coding sequence from alignment at CM002469.1:231638..234288-

mRNA sequence

>rna6676 ID=rna6676|Name=rna6676|organism=Nannochloropsis gaditana|type=mRNA|length=1578bp
CTTCAACTCGGAGCCTGACACCAGCATTCCACACCAGACTCGACCGCATT
ACCGGCGTGGAAACGCGGGGAATCCCCACTCGAAGATCTCTTGTTGGTCT
TTGTCCCAGCTTTTCCTTGAGACGATTTCTCACGTATTTCAAATGCATTT
GATACCTCAATTCTTTGACGGCACATAGAGTTCTAGTGTTCAACACCCTC
ATGCCGACTCCCTATCTCGCTACATAGAGGTCATGTCTTTCGCACAACGG
ACAACAAGATGGGCACGGGGACTTTTTCCACGGTGGAAAGGGTACAATGT
TCGCTGGAAAGAGGTCTTGGGTCCCTCGCAAGATCGAATGTTGCTGCCCT
GGGGGTTCATGGGCGAGGAAGACGTGCAAGGAAGAGTTGCGTCGCGCATC
CGGTGGCTGTCCGAAAAGCAACCCACAGTGATTCCACAACATGAGCACAT
GCCTGGAGACCTCACGACAAGCGAAATCGCGAATGAGCTTTCTGCCTCCT
TGGCAGAAGATATGTCGCACGGTGCTCAGCAGGCATACAGAAGAATCGTC
AGCTATTTCTTGGCCGTTCCCGGCTCGGGAGAGCAGGCAGGAAAATATGG
AGACTTCACGAATTCCAATTATTGTACCCCTGATTTATCGTGTTTTTTGG
AGGACATAAAGCGTTCGTACACCGAGTGGGGGGTGAAGCCTTGCCTGCAC
GTGGAGTCAGTCCGGGCCAAGTTGCGATGCTTGCGCGTGGAGGAAGGCTT
GTTGAGCAAAAATACTTACGCCTTGTTTGGGACAATGGGCCGATATGAGG
CATTGACACACATATGGGAGGGTGTGATAGGACCGGAGGGGCGTTTGCTG
CAGGAACTGGAGGGGAACGTGCCCAGGCGCTTGGTCGCCGAGGTGGAGCT
GTCGGTGGAAGAGTCGTTCTGGTTCCAGAGCCGGCCGGCCACAGCGTGGC
CCAGAGTAGGAAATAATGCAGAGCAAGATCTTGAGCAAGGTCTTACGGGA
GGGAAACAGGGGGAAATGAAAAAGCGGACGCACTATTTCACTTTCGAAAG
CGACTACTTCGGCGACGAGGGGCAGTTGGAGTGGGTCGTTAGCAATATCA
ACGACGTGATTGCCTCTCCTTCCCTCTCTCGGGCCCTGATCCAGTAATGA
GAAACTCAAGGGTGGAAGCCAAGCCGCCGAGTCAATAGTGTTGACATTTC
TGGGTGGGACAGCGCCGAGGAAGGGTAGGACAGACGGAAGGTGGAAAGGC
GGACACTAGAGGGAGGTCTCAACGAGGCTGGGGTACGCGGAACACAGGCA
GTGGAATTGCTGTGCAGTGGATCATACACGTATGTGAATGCGAGAGGATT
GACACGATGCGGCGTCCGTGAGATAGAGTAGATTAGGATAATACAAAGGG
CAGGCTGCGGGATTGCAAATTTGTAAGTAGAGCATGGGCACATGGATGTG
CGCCTTAAAGTCAAACGCTTTCTAAGTGTATGTGAGTACGGACAATCAGT
ATCAGTCATAATATGATCAAATAAGCATCTGCTAGTCCCGGAATTTGGCC
GGACACACGGCTAAAGCCATGGCAACTG

protein sequence of rna6676

>rna6676-protein ID=rna6676-protein|Name=rna6676|organism=Nannochloropsis gaditana|type=polypeptide|length=650bp
MTRTTRAAFPSAPQLRASSAGTSNRRRHIAGAGTFLHFFTTTGTCLYFSL
CWWTVCDAFIRKAGWVAPVSAFASQPSPSPRGPQRVAHRSLSSATFPSSF
NIISMVPVTTRASAERRQAAGLGLKRRSHASNGVSSSNIELPLCSIRGGS
GGKQSSEHPLYSSAAAAGLDADAYFPHPRKSDAVSSSDAVSSMAGSSPLA
PSFVETRDGVRKHRVGWDSEKRQFQVITHPMHGDSFQGRVERYLRQSFLP
DHVTPDYYNYTRWRVLQRLISATVSVFGTRALLLALGLKTERVGLTATFN
WIQKDAFGKFGRIMWASKMGRRFDSDAKRWRFRSSLLYAAGTGLEVLTYI
FPAAFLLLATVANVLKQMSMLTSSATRNAMYKSFAGDSQNLGDITAKGEA
QIAVVDLLGILLGIFLSKMIGTAQVGMAVAYIALSCVDVFAIYNEIRSVV
FSSLNLERGAMVVQGFARQGPEGVPTPNQASQKERIFWNPASIDLGIFKT
VSQTGCSLEELHEIREVFSGPVGQEKHFLCTWSSSRGASIVLHTAATHHD
ILRALLTWAYFQKAWAEGSAVEERREEGKKGREGRRKHRRAWSAEEEKEE
GQLQKRALIALTEAHQQAKEDESSFLEALGRKGWDMRHTVFGRIKQRTEW

mRNA from alignment at CM002469.1:231638..234288-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6676 ID=rna6676|Name=rna6676|organism=Nannochloropsis gaditana|type=mRNA|length=2651bp|location=Sequence derived from alignment at CM002469.1:231638..234288- (Nannochloropsis gaditana)
GTCAACGGAAAACTGCAGTGGGTGGCTTACTCTGTTGTGTTATATCGCTT
TCCCACATTAGTCTTGCAGCTCCTTCAACACAGGCTTGCAAACGGCGTGG
ATCGTAATCCATTTCCCCTTACCCTCGTCTTTTATGCGCGCATTTCGACA
GGTTACTGAAGAGAGATATCCTGCAAGTGTATTGGATGCAGTCATCGGGA
TTTCATTCCGAAGGCATTTGACAAAGGTGAACTCAAGCCTTGTTGGCTTC
AAGCTTCCAGACCCCTTGTGTCCTCACCCAGTACATCTCGTCTGCGTAAA
ACAAACCATTGCCAAAAAAATAGAAGGCGTGACGTTTGTTTGGAGGACAT
ACTTGTGTGTGTCTGGTTTCACTTAGCTCGAGCCAGACATACATGACGAG
GACAACCCGTGCGGCTTTTCCGTCCGCTCCTCAACTTCGGGCATCGAGCG
CAGGGACCAGCAACAGAAGAAGGCACATCGCTGGCGCTGGCACGTTCCTC
CATTTTTTCACTACTACTGGTACTTGTCTATATTTTTCTCTCTGTTGGTG
GACCGTGTGCGACGCCTTCATAAGAAAAGCAGGGTGGGTAGCCCCGGTCT
CCGCCTTTGCCTCCCAGCCCTCGCCCTCTCCACGCGGTCCACAACGTGTC
GCGCATCGTTCACTGTCCTCCGCCACCTTCCCGTCGAGCTTCAATATAAT
TTCCATGGTGCCTGTTACCACGCGCGCATCGGCTGAACGGCGACAGGCCG
CGGGCCTGGGCCTGAAACGAAGGAGCCATGCAAGCAACGGCGTGAGCAGC
AGCAACATAGAGTTGCCTCTCTGCTCCATACGTGGTGGTTCGGGGGGGAA
ACAGTCAAGCGAGCATCCCTTGTACTCGAGCGCGGCGGCTGCTGGCCTGG
ATGCCGACGCCTACTTCCCGCACCCCAGAAAATCGGACGCCGTGTCCTCA
TCGGACGCTGTGTCCTCGATGGCTGGGAGCAGTCCGTTGGCCCCTTCTTT
CGTCGAGACCAGGGACGGGGTTCGGAAGCATCGCGTTGGCTGGGACTCGG
AGAAACGCCAATTCCAAGTCATCACCCACCCCATGCACGGGGACAGCTTC
CAAGGCCGGGTGGAGCGTTACCTGCGCCAGAGTTTCCTGCCCGACCATGT
GACGCCCGACTACTACAACTACACGCGCTGGCGAGTTCTCCAGCGGCTCA
TCTCTGCAACAGTCTCAGTCTTCGGAACGCGGGCCCTCTTACTGGCCTTG
GGCCTGAAGACGGAGCGAGTGGGCCTGACGGCGACGTTCAATTGGATCCA
AAAGGATGCCTTTGGCAAGTTTGGGCGCATCATGTGGGCCTCCAAGATGG
GCCGCCGCTTCGACTCGGACGCCAAGCGGTGGCGGTTCAGGTCTTCGCTG
CTCTACGCCGCGGGCACAGGCCTGGAGGTGTTGACCTACATCTTCCCGGC
CGCCTTTTTGCTCCTGGCGACGGTCGCGAACGTCCTCAAGCAAATGTCCA
TGCTGACCAGCTCCGCCACGCGCAATGCCATGTACAAGAGTTTTGCCGGC
GACAGTCAGAACTTGGGGGACATCACGGCGAAGGGGGAGGCGCAGATCGC
CGTGGTGGATTTGTTGGGGATTCTTCTGGGAATTTTCCTGAGTAAAATGA
TTGGGACCGCCCAGGTAGGGATGGCAGTCGCTTACATCGCCCTGTCCTGC
GTGGACGTCTTTGCCATCTACAACGAGATCCGCTCCGTGGTATTCTCCTC
CTTGAATTTGGAGAGAGGGGCTATGGTCGTGCAAGGCTTTGCCCGACAGG
GTCCTGAGGGAGTGCCGACCCCCAATCAGGCCTCTCAGAAGGAGCGCATC
TTTTGGAACCCGGCGTCGATCGACCTCGGCATCTTCAAGACGGTCAGCCA
AACCGGGTGCTCGTTGGAAGAATTACACGAGATTCGCGAGGTCTTCTCGG
GGCCCGTGGGCCAGGAGAAGCACTTCCTCTGCACCTGGTCCTCCTCTCGC
GGGGCTTCCATCGTCTTGCACACGGCGGCTACTCACCACGACATCCTGCG
GGCGCTTTTGACCTGGGCGTACTTTCAAAAAGCGTGGGCAGAAGGGAGTG
CCGTGGAGGAGAGGAGGGAGGAGGGAAAGAAAGGAAGGGAGGGAAGACGG
AAGCATCGGCGGGCATGGTCTGCAGAAGAAGAGAAGGAGGAGGGGCAGCT
GCAGAAACGAGCACTAATTGCTCTGACAGAAGCGCATCAACAGGCAAAGG
AAGATGAGAGCAGCTTTTTGGAAGCCCTTGGGAGAAAAGGATGGGACATG
CGGCATACAGTCTTTGGGAGGATCAAACAGCGGACAGAGTGGTGAAGAGG
AGTGGTCAGTCAAGACTCGATGGGTGCGGGATGGCGGATCGGCACACATT
CATGTGCAGCAGAGGTCATCGCTTGACCGGGAGTCGCGAGCTCAGAGGAA
ATGGAGTTGACTTGTTTATCAGAAGCCGAGGCAAAGAGACGCGCGCGGAG
TGGATTGCCCAACAGAAATAGTTTAGGCAGAATGCCGTGCACCCGCTTCA
TTTGCAGAAAGGGGCGGACATCAGCCATGTGTATAAAGCATCATTGAATG
ACGGGGACATAACATTTATGAAGCAAAATTGGAAAATTCAGTTGCCATGG
C

Coding sequence (CDS) from alignment at CM002469.1:231638..234288-

>rna6676 ID=rna6676|Name=rna6676|organism=Nannochloropsis gaditana|type=CDS|length=1953bp|location=Sequence derived from alignment at CM002469.1:231638..234288- (Nannochloropsis gaditana)
ATGACGAGGACAACCCGTGCGGCTTTTCCGTCCGCTCCTCAACTTCGGGC
ATCGAGCGCAGGGACCAGCAACAGAAGAAGGCACATCGCTGGCGCTGGCA
CGTTCCTCCATTTTTTCACTACTACTGGTACTTGTCTATATTTTTCTCTC
TGTTGGTGGACCGTGTGCGACGCCTTCATAAGAAAAGCAGGGTGGGTAGC
CCCGGTCTCCGCCTTTGCCTCCCAGCCCTCGCCCTCTCCACGCGGTCCAC
AACGTGTCGCGCATCGTTCACTGTCCTCCGCCACCTTCCCGTCGAGCTTC
AATATAATTTCCATGGTGCCTGTTACCACGCGCGCATCGGCTGAACGGCG
ACAGGCCGCGGGCCTGGGCCTGAAACGAAGGAGCCATGCAAGCAACGGCG
TGAGCAGCAGCAACATAGAGTTGCCTCTCTGCTCCATACGTGGTGGTTCG
GGGGGGAAACAGTCAAGCGAGCATCCCTTGTACTCGAGCGCGGCGGCTGC
TGGCCTGGATGCCGACGCCTACTTCCCGCACCCCAGAAAATCGGACGCCG
TGTCCTCATCGGACGCTGTGTCCTCGATGGCTGGGAGCAGTCCGTTGGCC
CCTTCTTTCGTCGAGACCAGGGACGGGGTTCGGAAGCATCGCGTTGGCTG
GGACTCGGAGAAACGCCAATTCCAAGTCATCACCCACCCCATGCACGGGG
ACAGCTTCCAAGGCCGGGTGGAGCGTTACCTGCGCCAGAGTTTCCTGCCC
GACCATGTGACGCCCGACTACTACAACTACACGCGCTGGCGAGTTCTCCA
GCGGCTCATCTCTGCAACAGTCTCAGTCTTCGGAACGCGGGCCCTCTTAC
TGGCCTTGGGCCTGAAGACGGAGCGAGTGGGCCTGACGGCGACGTTCAAT
TGGATCCAAAAGGATGCCTTTGGCAAGTTTGGGCGCATCATGTGGGCCTC
CAAGATGGGCCGCCGCTTCGACTCGGACGCCAAGCGGTGGCGGTTCAGGT
CTTCGCTGCTCTACGCCGCGGGCACAGGCCTGGAGGTGTTGACCTACATC
TTCCCGGCCGCCTTTTTGCTCCTGGCGACGGTCGCGAACGTCCTCAAGCA
AATGTCCATGCTGACCAGCTCCGCCACGCGCAATGCCATGTACAAGAGTT
TTGCCGGCGACAGTCAGAACTTGGGGGACATCACGGCGAAGGGGGAGGCG
CAGATCGCCGTGGTGGATTTGTTGGGGATTCTTCTGGGAATTTTCCTGAG
TAAAATGATTGGGACCGCCCAGGTAGGGATGGCAGTCGCTTACATCGCCC
TGTCCTGCGTGGACGTCTTTGCCATCTACAACGAGATCCGCTCCGTGGTA
TTCTCCTCCTTGAATTTGGAGAGAGGGGCTATGGTCGTGCAAGGCTTTGC
CCGACAGGGTCCTGAGGGAGTGCCGACCCCCAATCAGGCCTCTCAGAAGG
AGCGCATCTTTTGGAACCCGGCGTCGATCGACCTCGGCATCTTCAAGACG
GTCAGCCAAACCGGGTGCTCGTTGGAAGAATTACACGAGATTCGCGAGGT
CTTCTCGGGGCCCGTGGGCCAGGAGAAGCACTTCCTCTGCACCTGGTCCT
CCTCTCGCGGGGCTTCCATCGTCTTGCACACGGCGGCTACTCACCACGAC
ATCCTGCGGGCGCTTTTGACCTGGGCGTACTTTCAAAAAGCGTGGGCAGA
AGGGAGTGCCGTGGAGGAGAGGAGGGAGGAGGGAAAGAAAGGAAGGGAGG
GAAGACGGAAGCATCGGCGGGCATGGTCTGCAGAAGAAGAGAAGGAGGAG
GGGCAGCTGCAGAAACGAGCACTAATTGCTCTGACAGAAGCGCATCAACA
GGCAAAGGAAGATGAGAGCAGCTTTTTGGAAGCCCTTGGGAGAAAAGGAT
GGGACATGCGGCATACAGTCTTTGGGAGGATCAAACAGCGGACAGAGTGG
TGA

Synonyms

Publications